Wall clock time and date at job start Sun Mar 29 2020 21:58:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46898 * 111.00137 * 2 1 4 4 C 1.46897 * 111.00156 * 123.95700 * 2 1 3 5 5 C 1.53003 * 109.47330 * 164.15173 * 4 2 1 6 6 H 1.09005 * 110.88244 * 60.04893 * 5 4 2 7 7 C 1.55152 * 111.03763 * 183.95432 * 5 4 2 8 8 C 1.54323 * 102.94296 * 153.59233 * 7 5 4 9 9 N 1.47292 * 107.30380 * 337.81760 * 8 7 5 10 10 C 1.36940 * 125.78996 * 178.92367 * 9 8 7 11 11 H 1.08007 * 119.99638 * 180.02562 * 10 9 8 12 12 C 1.38812 * 120.00551 * 359.97438 * 10 9 8 13 13 N 1.31620 * 119.99592 * 0.02562 * 12 10 9 14 14 Si 1.86795 * 120.00225 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.47048 * 60.00454 * 14 12 10 16 16 H 1.48503 * 109.46773 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47261 * 300.00462 * 14 12 10 18 18 C 1.47420 * 108.56165 * 358.92661 * 9 8 7 19 19 H 1.08998 * 109.46958 * 296.50003 * 1 2 3 20 20 H 1.08999 * 109.46788 * 56.50086 * 1 2 3 21 21 H 1.08996 * 109.47217 * 176.50023 * 1 2 3 22 22 H 1.08999 * 109.47469 * 183.95691 * 3 2 1 23 23 H 1.08998 * 109.47561 * 303.95758 * 3 2 1 24 24 H 1.08999 * 109.47078 * 63.95715 * 3 2 1 25 25 H 1.09001 * 109.47030 * 44.15499 * 4 2 1 26 26 H 1.08997 * 109.47352 * 284.15315 * 4 2 1 27 27 H 1.09000 * 110.72007 * 271.95231 * 7 5 4 28 28 H 1.09001 * 110.72215 * 35.05070 * 7 5 4 29 29 H 1.09000 * 109.88557 * 97.22364 * 8 7 5 30 30 H 1.08993 * 109.88482 * 218.23661 * 8 7 5 31 31 H 0.97000 * 120.00186 * 180.02562 * 13 12 10 32 32 H 1.09000 * 110.36406 * 265.26610 * 18 9 8 33 33 H 1.09000 * 110.37251 * 143.04820 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 3.4738 -1.0810 0.8999 6 1 4.0546 -0.1643 0.7966 7 6 4.0421 -1.9746 2.0337 8 6 5.2015 -2.7192 1.3388 9 7 4.9327 -2.6943 -0.1092 10 6 5.7341 -3.2299 -1.0818 11 1 5.4452 -3.1575 -2.1200 12 6 6.9183 -3.8650 -0.7337 13 7 7.2706 -3.9527 0.5315 14 14 8.0111 -4.5961 -2.0605 15 1 8.4401 -3.5244 -2.9947 16 1 9.2073 -5.2125 -1.4323 17 1 7.2552 -5.6321 -2.8092 18 6 3.6548 -1.9954 -0.3373 19 1 -0.3633 0.4585 0.9197 20 1 -0.3633 0.5672 -0.8570 21 1 -0.3633 -1.0257 -0.0627 22 1 3.0828 1.3432 -0.0709 23 1 1.5898 1.9164 -0.8524 24 1 1.7045 1.8723 0.9233 25 1 1.4373 -1.6969 1.2382 26 1 1.8911 -0.1793 2.0501 27 1 4.4141 -1.3639 2.8564 28 1 3.2865 -2.6762 2.3872 29 1 6.1447 -2.2150 1.5489 30 1 5.2452 -3.7493 1.6922 31 1 8.0983 -4.3962 0.7748 32 1 2.8365 -2.7126 -0.4019 33 1 3.7067 -1.3971 -1.2470 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261147944.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:04 Heat of formation + Delta-G solvation = 27.094290 kcal Electronic energy + Delta-G solvation = -13089.059106 eV Core-core repulsion = 10957.458696 eV Total energy + Delta-G solvation = -2131.600410 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.17751 -36.16944 -32.55586 -29.79891 -28.28103 -27.46619 -25.60064 -24.00089 -21.58875 -19.88174 -19.23902 -16.71937 -15.60858 -14.97855 -14.75208 -14.41267 -14.08853 -13.40976 -12.65324 -12.25586 -12.16543 -11.91328 -11.71420 -11.59451 -11.31903 -10.95466 -10.77609 -10.63317 -10.07611 -9.95196 -9.76888 -9.63430 -9.50351 -8.49001 -8.14991 -6.68175 -5.59756 -2.91532 3.47763 3.51299 3.52998 4.12472 4.60382 5.17304 5.25284 5.39002 5.44432 5.58968 5.64788 5.67206 5.70231 5.81211 5.89949 6.00673 6.09077 6.16717 6.23116 6.53594 6.66375 6.75493 6.98282 7.16587 7.20607 7.25103 7.68259 7.74743 7.93351 8.38987 9.34697 9.96081 10.64266 11.52649 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.059667 B = 0.008320 C = 0.007732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 469.162365 B = 3364.621973 C = 3620.379320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.544 5.544 3 C 0.025 3.975 4 C 0.069 3.931 5 C -0.098 4.098 6 H 0.070 0.930 7 C -0.140 4.140 8 C 0.179 3.821 9 N -0.611 5.611 10 C -0.222 4.222 11 H 0.077 0.923 12 C -0.013 4.013 13 N -0.926 5.926 14 Si 0.911 3.089 15 H -0.286 1.286 16 H -0.291 1.291 17 H -0.286 1.286 18 C 0.156 3.844 19 H 0.019 0.981 20 H 0.064 0.936 21 H 0.067 0.933 22 H 0.072 0.928 23 H 0.063 0.937 24 H 0.020 0.980 25 H 0.072 0.928 26 H 0.029 0.971 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.043 0.957 30 H 0.040 0.960 31 H 0.251 0.749 32 H 0.015 0.985 33 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.688 7.789 1.855 13.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.267 5.267 3 C -0.123 4.123 4 C -0.059 4.059 5 C -0.118 4.118 6 H 0.089 0.911 7 C -0.179 4.179 8 C 0.054 3.946 9 N -0.337 5.337 10 C -0.350 4.350 11 H 0.094 0.906 12 C -0.208 4.208 13 N -0.574 5.574 14 Si 0.742 3.258 15 H -0.213 1.213 16 H -0.217 1.217 17 H -0.213 1.213 18 C 0.030 3.970 19 H 0.038 0.962 20 H 0.083 0.917 21 H 0.085 0.915 22 H 0.091 0.909 23 H 0.082 0.918 24 H 0.038 0.962 25 H 0.090 0.910 26 H 0.047 0.953 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.033 0.967 33 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -10.324 7.437 1.407 12.801 hybrid contribution 0.337 0.006 0.121 0.359 sum -9.986 7.443 1.528 12.548 Atomic orbital electron populations 1.22366 0.87967 1.02044 0.99852 1.61930 1.07109 1.13701 1.43999 1.22401 1.01533 0.88742 0.99669 1.22141 0.96331 0.97260 0.90160 1.22316 0.93102 0.98619 0.97762 0.91140 1.22896 0.99727 0.98266 0.96978 1.21129 0.92984 0.97676 0.82833 1.44616 1.20620 1.65855 1.02639 1.19050 0.99743 1.28587 0.87651 0.90556 1.24790 0.98251 1.01428 0.96364 1.69960 1.24361 1.48609 1.14488 0.86208 0.80045 0.78937 0.80654 1.21273 1.21687 1.21264 1.21365 0.88476 0.92271 0.94893 0.96236 0.91726 0.91457 0.90883 0.91837 0.96174 0.90993 0.95278 0.92578 0.92668 0.93854 0.94205 0.93887 0.96703 0.94248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.54 60.06 0.57 0.87 16 2 N -0.54 -7.76 4.73 -251.27 -1.19 -8.95 16 3 C 0.02 0.31 9.39 60.06 0.56 0.88 16 4 C 0.07 1.04 4.44 -3.82 -0.02 1.02 16 5 C -0.10 -1.82 2.98 -88.47 -0.26 -2.08 16 6 H 0.07 1.33 6.86 -51.93 -0.36 0.97 16 7 C -0.14 -2.73 6.42 -24.90 -0.16 -2.89 16 8 C 0.18 4.56 5.39 -2.92 -0.02 4.54 16 9 N -0.61 -16.56 3.40 -169.86 -0.58 -17.14 16 10 C -0.22 -6.50 10.28 -15.06 -0.15 -6.65 16 11 H 0.08 2.16 7.83 -52.48 -0.41 1.75 16 12 C -0.01 -0.37 5.49 -17.43 -0.10 -0.47 16 13 N -0.93 -28.25 10.34 55.49 0.57 -27.68 16 14 Si 0.91 22.87 29.55 -169.99 -5.02 17.84 16 15 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 16 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 17 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 18 C 0.16 3.48 6.46 -2.53 -0.02 3.47 16 19 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 20 H 0.06 0.66 8.12 -51.93 -0.42 0.24 16 21 H 0.07 0.75 8.08 -51.93 -0.42 0.33 16 22 H 0.07 1.00 6.74 -51.93 -0.35 0.65 16 23 H 0.06 0.70 8.12 -51.93 -0.42 0.28 16 24 H 0.02 0.23 8.11 -51.93 -0.42 -0.19 16 25 H 0.07 1.08 7.95 -51.93 -0.41 0.66 16 26 H 0.03 0.41 8.03 -51.93 -0.42 -0.01 16 27 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 28 H 0.05 1.01 8.04 -51.93 -0.42 0.59 16 29 H 0.04 1.21 7.39 -51.93 -0.38 0.83 16 30 H 0.04 1.11 7.52 -51.93 -0.39 0.72 16 31 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 32 H 0.02 0.34 8.03 -51.93 -0.42 -0.08 16 33 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 263.28 15.07 3.97 3.97 Total: -1.00 -31.38 263.28 -7.48 -38.86 By element: Atomic # 1 Polarization: 0.05 SS G_CDS: -5.64 Total: -5.60 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: 0.41 Total: -1.31 kcal Atomic # 7 Polarization: -52.57 SS G_CDS: -1.19 Total: -53.76 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -5.02 Total: 17.84 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -31.38 -7.48 -38.86 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261147944.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.952 kcal (2) G-P(sol) polarization free energy of solvation -31.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds