Wall clock time and date at job start Sun Mar 29 2020 21:58:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46898 * 111.00137 * 2 1 4 4 C 1.46897 * 111.00156 * 123.95700 * 2 1 3 5 5 C 1.53003 * 109.47330 * 164.15173 * 4 2 1 6 6 H 1.09005 * 110.88244 * 60.04893 * 5 4 2 7 7 C 1.55152 * 111.03763 * 183.95432 * 5 4 2 8 8 C 1.54323 * 102.94296 * 153.59233 * 7 5 4 9 9 N 1.47292 * 107.30380 * 337.81760 * 8 7 5 10 10 C 1.36940 * 125.78996 * 178.92367 * 9 8 7 11 11 H 1.08007 * 119.99638 * 180.02562 * 10 9 8 12 12 C 1.38812 * 120.00551 * 359.97438 * 10 9 8 13 13 N 1.31620 * 119.99592 * 0.02562 * 12 10 9 14 14 Si 1.86795 * 120.00225 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.47048 * 60.00454 * 14 12 10 16 16 H 1.48503 * 109.46773 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47261 * 300.00462 * 14 12 10 18 18 C 1.47420 * 108.56165 * 358.92661 * 9 8 7 19 19 H 1.08998 * 109.46958 * 296.50003 * 1 2 3 20 20 H 1.08999 * 109.46788 * 56.50086 * 1 2 3 21 21 H 1.08996 * 109.47217 * 176.50023 * 1 2 3 22 22 H 1.08999 * 109.47469 * 183.95691 * 3 2 1 23 23 H 1.08998 * 109.47561 * 303.95758 * 3 2 1 24 24 H 1.08999 * 109.47078 * 63.95715 * 3 2 1 25 25 H 1.09001 * 109.47030 * 44.15499 * 4 2 1 26 26 H 1.08997 * 109.47352 * 284.15315 * 4 2 1 27 27 H 1.09000 * 110.72007 * 271.95231 * 7 5 4 28 28 H 1.09001 * 110.72215 * 35.05070 * 7 5 4 29 29 H 1.09000 * 109.88557 * 97.22364 * 8 7 5 30 30 H 1.08993 * 109.88482 * 218.23661 * 8 7 5 31 31 H 0.97000 * 120.00186 * 180.02562 * 13 12 10 32 32 H 1.09000 * 110.36406 * 265.26610 * 18 9 8 33 33 H 1.09000 * 110.37251 * 143.04820 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 3.4738 -1.0810 0.8999 6 1 4.0546 -0.1643 0.7966 7 6 4.0421 -1.9746 2.0337 8 6 5.2015 -2.7192 1.3388 9 7 4.9327 -2.6943 -0.1092 10 6 5.7341 -3.2299 -1.0818 11 1 5.4452 -3.1575 -2.1200 12 6 6.9183 -3.8650 -0.7337 13 7 7.2706 -3.9527 0.5315 14 14 8.0111 -4.5961 -2.0605 15 1 8.4401 -3.5244 -2.9947 16 1 9.2073 -5.2125 -1.4323 17 1 7.2552 -5.6321 -2.8092 18 6 3.6548 -1.9954 -0.3373 19 1 -0.3633 0.4585 0.9197 20 1 -0.3633 0.5672 -0.8570 21 1 -0.3633 -1.0257 -0.0627 22 1 3.0828 1.3432 -0.0709 23 1 1.5898 1.9164 -0.8524 24 1 1.7045 1.8723 0.9233 25 1 1.4373 -1.6969 1.2382 26 1 1.8911 -0.1793 2.0501 27 1 4.4141 -1.3639 2.8564 28 1 3.2865 -2.6762 2.3872 29 1 6.1447 -2.2150 1.5489 30 1 5.2452 -3.7493 1.6922 31 1 8.0983 -4.3962 0.7748 32 1 2.8365 -2.7126 -0.4019 33 1 3.7067 -1.3971 -1.2470 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261147944.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:04 Heat of formation + Delta-G solvation = 5.783364 kcal Electronic energy + Delta-G solvation = -13089.983217 eV Core-core repulsion = 10957.458696 eV Total energy + Delta-G solvation = -2132.524521 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.67032 -37.61630 -34.55236 -31.69937 -29.99243 -28.39782 -27.36564 -25.72761 -22.89426 -21.81566 -20.74762 -18.82652 -17.05759 -16.61081 -16.02724 -15.91095 -15.64945 -14.99363 -14.30692 -13.85955 -13.70371 -13.32797 -13.17674 -12.86870 -12.75282 -12.60595 -12.50339 -12.23104 -12.04017 -11.78435 -11.53917 -11.40996 -11.28355 -10.68978 -9.17069 -8.86261 -7.83333 -5.18283 1.45006 1.49395 1.55683 2.51466 3.07724 3.34323 3.73771 3.96857 4.09958 4.15714 4.35267 4.50164 4.57678 4.60890 4.71371 4.75283 4.85041 4.90069 5.02607 5.07512 5.08674 5.13731 5.22254 5.45757 5.53444 5.69143 5.78413 6.16683 6.21601 6.24161 7.12557 7.81060 8.47154 9.27649 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.059667 B = 0.008320 C = 0.007732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 469.162365 B = 3364.621973 C = 3620.379320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.567 5.567 3 C 0.026 3.974 4 C 0.079 3.921 5 C -0.082 4.082 6 H 0.066 0.934 7 C -0.125 4.125 8 C 0.184 3.816 9 N -0.634 5.634 10 C -0.244 4.244 11 H 0.079 0.921 12 C -0.070 4.070 13 N -0.954 5.954 14 Si 0.981 3.019 15 H -0.276 1.276 16 H -0.292 1.292 17 H -0.277 1.277 18 C 0.155 3.845 19 H 0.032 0.968 20 H 0.076 0.924 21 H 0.067 0.933 22 H 0.056 0.944 23 H 0.076 0.924 24 H 0.034 0.966 25 H 0.075 0.925 26 H 0.050 0.950 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.008 0.992 30 H 0.004 0.996 31 H 0.247 0.753 32 H 0.016 0.984 33 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.073 8.668 1.683 14.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.292 5.292 3 C -0.122 4.122 4 C -0.049 4.049 5 C -0.102 4.102 6 H 0.085 0.915 7 C -0.164 4.164 8 C 0.059 3.941 9 N -0.361 5.361 10 C -0.373 4.373 11 H 0.097 0.903 12 C -0.263 4.263 13 N -0.604 5.604 14 Si 0.809 3.191 15 H -0.202 1.202 16 H -0.218 1.218 17 H -0.203 1.203 18 C 0.031 3.969 19 H 0.051 0.949 20 H 0.094 0.906 21 H 0.086 0.914 22 H 0.075 0.925 23 H 0.095 0.905 24 H 0.052 0.948 25 H 0.093 0.907 26 H 0.068 0.932 27 H 0.099 0.901 28 H 0.091 0.909 29 H 0.026 0.974 30 H 0.022 0.978 31 H 0.056 0.944 32 H 0.034 0.966 33 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -11.748 8.338 1.224 14.458 hybrid contribution 0.738 -0.253 0.145 0.794 sum -11.010 8.085 1.369 13.728 Atomic orbital electron populations 1.22394 0.86054 1.02510 1.01073 1.61872 1.08963 1.14550 1.43772 1.22399 1.00527 0.88280 1.01022 1.21962 0.93415 0.98096 0.91412 1.22190 0.95905 0.97202 0.94916 0.91513 1.22757 0.97764 0.98446 0.97399 1.20932 0.94181 0.96056 0.82951 1.44979 1.21940 1.66167 1.02970 1.19464 1.00506 1.28805 0.88519 0.90268 1.25696 0.99749 1.02128 0.98697 1.70195 1.24486 1.49266 1.16426 0.85116 0.77804 0.78260 0.77954 1.20239 1.21810 1.20260 1.21476 0.86418 0.92444 0.96601 0.94903 0.90564 0.91434 0.92536 0.90506 0.94777 0.90662 0.93234 0.90142 0.90865 0.97393 0.97790 0.94425 0.96643 0.94967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 9.54 127.69 1.22 1.76 16 2 N -0.57 -14.64 4.73 -948.87 -4.49 -19.13 16 3 C 0.03 0.58 9.39 127.69 1.20 1.78 16 4 C 0.08 2.16 4.44 86.30 0.38 2.54 16 5 C -0.08 -2.92 2.98 -9.40 -0.03 -2.94 16 6 H 0.07 2.43 6.86 -2.38 -0.02 2.41 16 7 C -0.12 -4.71 6.42 31.78 0.20 -4.51 16 8 C 0.18 9.61 5.39 86.68 0.47 10.08 16 9 N -0.63 -34.99 3.40 -691.31 -2.35 -37.34 16 10 C -0.24 -14.54 10.28 84.03 0.86 -13.68 16 11 H 0.08 4.53 7.83 -2.91 -0.02 4.50 16 12 C -0.07 -4.19 5.49 84.86 0.47 -3.73 16 13 N -0.95 -59.94 10.34 21.65 0.22 -59.72 16 14 Si 0.98 47.55 29.55 68.60 2.03 49.58 16 15 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 16 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 17 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 18 C 0.16 6.89 6.46 86.86 0.56 7.45 16 19 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 20 H 0.08 1.31 8.12 -2.39 -0.02 1.29 16 21 H 0.07 1.31 8.08 -2.39 -0.02 1.30 16 22 H 0.06 1.45 6.74 -2.39 -0.02 1.43 16 23 H 0.08 1.50 8.12 -2.39 -0.02 1.48 16 24 H 0.03 0.67 8.11 -2.39 -0.02 0.65 16 25 H 0.07 2.01 7.95 -2.39 -0.02 2.00 16 26 H 0.05 1.18 8.03 -2.39 -0.02 1.16 16 27 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 28 H 0.07 2.51 8.04 -2.39 -0.02 2.49 16 29 H 0.01 0.46 7.39 -2.39 -0.02 0.44 16 30 H 0.00 0.23 7.52 -2.39 -0.02 0.21 16 31 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 32 H 0.02 0.70 8.03 -2.39 -0.02 0.68 16 33 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -68.52 263.28 1.79 -66.73 By element: Atomic # 1 Polarization: 0.08 SS G_CDS: 1.05 Total: 1.13 kcal Atomic # 6 Polarization: -6.58 SS G_CDS: 5.33 Total: -1.25 kcal Atomic # 7 Polarization: -109.57 SS G_CDS: -6.62 Total: -116.19 kcal Atomic # 14 Polarization: 47.55 SS G_CDS: 2.03 Total: 49.58 kcal Total: -68.52 1.79 -66.73 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261147944.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.513 kcal (2) G-P(sol) polarization free energy of solvation -68.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds