Wall clock time and date at job start Sun Mar 29 2020 22:09:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47235 * 2 1 4 4 C 1.50700 * 112.99998 * 295.18084 * 3 2 1 5 5 O 1.21291 * 119.99840 * 342.29323 * 4 3 2 6 6 N 1.34776 * 120.00153 * 162.29096 * 4 3 2 7 7 C 1.37094 * 119.99915 * 180.02562 * 6 4 3 8 8 H 1.08000 * 119.99995 * 359.97438 * 7 6 4 9 9 C 1.38952 * 119.99943 * 179.72716 * 7 6 4 10 10 N 1.31411 * 120.00045 * 0.27000 * 9 7 6 11 11 Si 1.86806 * 120.00203 * 180.27359 * 9 7 6 12 12 H 1.48496 * 109.47204 * 89.99600 * 11 9 7 13 13 H 1.48491 * 109.47312 * 209.99537 * 11 9 7 14 14 H 1.48508 * 109.46807 * 329.99788 * 11 9 7 15 15 C 1.54036 * 113.92953 * 67.11508 * 3 2 1 16 16 O 1.44173 * 85.52132 * 136.81759 * 15 3 2 17 17 C 1.44184 * 93.33847 * 335.80666 * 16 15 3 18 18 H 1.08996 * 109.47178 * 183.86999 * 1 2 3 19 19 H 1.09001 * 109.47391 * 303.86833 * 1 2 3 20 20 H 1.08999 * 109.47068 * 63.86766 * 1 2 3 21 21 H 1.09001 * 109.47576 * 239.99533 * 2 1 3 22 22 H 1.09000 * 109.47284 * 119.99758 * 2 1 3 23 23 H 0.96996 * 120.00206 * 359.97438 * 6 4 3 24 24 H 0.96995 * 119.99917 * 180.02562 * 10 9 7 25 25 H 1.09003 * 113.86050 * 250.96858 * 15 3 2 26 26 H 1.09000 * 113.86485 * 22.66808 * 15 3 2 27 27 H 1.08996 * 113.86415 * 270.04673 * 17 16 15 28 28 H 1.09007 * 113.97808 * 138.35271 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6798 2.1944 -1.2554 5 8 1.3435 1.5876 -2.2503 6 7 1.7312 3.5410 -1.2725 7 6 1.4031 4.2250 -2.4144 8 1 1.1037 3.6847 -3.3004 9 6 1.4507 5.6136 -2.4304 10 7 1.8154 6.2711 -1.3526 11 14 0.9961 6.5460 -3.9841 12 1 -0.4587 6.8436 -3.9751 13 1 1.7610 7.8175 -4.0400 14 1 1.3247 5.7179 -5.1723 15 6 1.7320 2.2140 1.2971 16 8 3.0841 2.7037 1.1932 17 6 3.5202 1.5788 0.4036 18 1 -0.3633 -1.0253 0.0694 19 1 -0.3634 0.5727 0.8533 20 1 -0.3633 0.4526 -0.9226 21 1 1.8933 -0.5139 -0.8899 22 1 1.8933 -0.5138 0.8900 23 1 1.9998 4.0263 -0.4768 24 1 1.8482 7.2404 -1.3637 25 1 0.9727 2.9874 1.1805 26 1 1.5605 1.5727 2.1616 27 1 3.8947 0.7435 0.9953 28 1 4.1797 1.8463 -0.4221 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306433868.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:57 Heat of formation + Delta-G solvation = -82.920192 kcal Electronic energy + Delta-G solvation = -13224.567379 eV Core-core repulsion = 10854.644627 eV Total energy + Delta-G solvation = -2369.922753 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 199.100 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.13300 -39.21993 -36.17445 -34.48372 -33.27313 -29.67231 -27.64432 -26.96380 -23.95290 -23.23483 -20.31552 -19.47904 -17.96722 -17.18112 -16.96693 -16.41163 -15.78291 -15.62636 -15.37338 -14.95648 -14.07385 -13.71624 -13.52553 -13.40627 -12.96183 -12.84116 -12.46129 -12.15224 -12.02515 -11.60413 -11.48001 -11.24385 -10.96941 -10.16311 -10.05840 -8.50193 -6.01089 1.34243 1.38802 1.52789 1.88211 2.26556 2.65242 3.04762 3.10297 3.49549 3.84604 4.13539 4.30046 4.35367 4.47661 4.53403 4.69531 4.76728 4.94069 5.02921 5.08804 5.16099 5.35289 5.36226 5.46864 5.95352 6.54040 7.06056 7.51911 8.05417 8.66915 Molecular weight = 199.10amu Principal moments of inertia in cm(-1) A = 0.046789 B = 0.011197 C = 0.009875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.287725 B = 2500.112513 C = 2834.847077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.091 4.091 3 C -0.145 4.145 4 C 0.454 3.546 5 O -0.629 6.629 6 N -0.563 5.563 7 C -0.342 4.342 8 H 0.081 0.919 9 C -0.013 4.013 10 N -0.918 5.918 11 Si 0.998 3.002 12 H -0.268 1.268 13 H -0.269 1.269 14 H -0.271 1.271 15 C 0.052 3.948 16 O -0.401 6.401 17 C 0.057 3.943 18 H 0.076 0.924 19 H 0.062 0.938 20 H 0.023 0.977 21 H 0.057 0.943 22 H 0.108 0.892 23 H 0.399 0.601 24 H 0.279 0.721 25 H 0.074 0.926 26 H 0.131 0.869 27 H 0.134 0.866 28 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.480 -7.859 6.731 10.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.128 4.128 3 C -0.149 4.149 4 C 0.242 3.758 5 O -0.517 6.517 6 N -0.199 5.199 7 C -0.472 4.472 8 H 0.099 0.901 9 C -0.213 4.213 10 N -0.558 5.558 11 Si 0.821 3.179 12 H -0.193 1.193 13 H -0.194 1.194 14 H -0.196 1.196 15 C -0.024 4.024 16 O -0.320 6.320 17 C -0.019 4.019 18 H 0.095 0.905 19 H 0.081 0.919 20 H 0.042 0.958 21 H 0.075 0.925 22 H 0.127 0.873 23 H 0.234 0.766 24 H 0.089 0.911 25 H 0.092 0.908 26 H 0.149 0.851 27 H 0.151 0.849 28 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.415 -7.787 6.215 9.971 hybrid contribution -0.167 0.881 -0.664 1.116 sum 0.248 -6.906 5.551 8.864 Atomic orbital electron populations 1.21702 0.95616 1.02367 1.00929 1.21305 0.96559 0.91735 1.03219 1.23779 0.98785 0.98553 0.93747 1.20076 0.83423 0.82456 0.89889 1.90462 1.54888 1.68659 1.37664 1.42074 1.58444 1.05361 1.14052 1.19761 1.44879 0.90002 0.92516 0.90089 1.26177 0.96327 0.96938 1.01900 1.69722 1.46971 1.09357 1.29724 0.84864 0.78623 0.77371 0.77058 1.19320 1.19376 1.19576 1.24239 0.85137 0.96819 0.96235 1.89697 1.25277 1.41943 1.75069 1.24182 0.93661 0.89881 0.94215 0.90497 0.91933 0.95776 0.92451 0.87327 0.76599 0.91127 0.90796 0.85112 0.84892 0.90836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.34 9.60 71.98 0.69 -3.64 15 2 C -0.09 -2.59 5.01 30.59 0.15 -2.44 15 3 C -0.15 -5.15 0.97 -52.23 -0.05 -5.20 15 4 C 0.45 22.62 6.52 87.66 0.57 23.20 15 5 O -0.63 -35.68 14.93 -3.06 -0.05 -35.72 15 6 N -0.56 -30.83 5.06 -306.99 -1.55 -32.38 15 7 C -0.34 -20.24 9.68 84.04 0.81 -19.43 15 8 H 0.08 5.04 7.16 -2.91 -0.02 5.02 15 9 C -0.01 -0.73 5.50 84.93 0.47 -0.26 15 10 N -0.92 -51.82 13.05 21.66 0.28 -51.53 15 11 Si 1.00 43.90 29.55 68.60 2.03 45.92 15 12 H -0.27 -11.33 7.11 99.48 0.71 -10.63 15 13 H -0.27 -11.17 7.11 99.48 0.71 -10.46 15 14 H -0.27 -11.90 7.11 99.48 0.71 -11.20 15 15 C 0.05 1.64 7.12 72.27 0.51 2.15 15 16 O -0.40 -14.56 11.46 -148.98 -1.71 -16.27 15 17 C 0.06 1.79 8.35 72.27 0.60 2.39 15 18 H 0.08 1.78 8.14 -2.39 -0.02 1.76 15 19 H 0.06 1.61 7.58 -2.39 -0.02 1.59 15 20 H 0.02 0.89 6.98 -2.39 -0.02 0.88 15 21 H 0.06 1.83 7.94 -2.39 -0.02 1.81 15 22 H 0.11 2.11 8.09 -2.39 -0.02 2.09 15 23 H 0.40 21.57 6.00 -92.71 -0.56 21.01 15 24 H 0.28 14.63 8.31 -92.71 -0.77 13.86 15 25 H 0.07 2.61 7.66 -2.39 -0.02 2.59 15 26 H 0.13 2.84 8.10 -2.39 -0.02 2.82 15 27 H 0.13 2.81 8.06 -2.39 -0.02 2.79 15 28 H 0.07 2.52 8.09 -2.38 -0.02 2.51 15 Total: -1.00 -70.13 240.23 3.37 -66.76 By element: Atomic # 1 Polarization: 25.84 SS G_CDS: 0.60 Total: 26.45 kcal Atomic # 6 Polarization: -6.99 SS G_CDS: 3.76 Total: -3.23 kcal Atomic # 7 Polarization: -82.64 SS G_CDS: -1.27 Total: -83.91 kcal Atomic # 8 Polarization: -50.23 SS G_CDS: -1.75 Total: -51.99 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.92 kcal Total: -70.13 3.37 -66.76 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306433868.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.162 kcal (2) G-P(sol) polarization free energy of solvation -70.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds