Wall clock time and date at job start Sun Mar 29 2020 21:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.70153 * 2 1 4 4 C 1.53345 * 109.67708 * 120.51677 * 2 1 3 5 5 C 1.52924 * 108.80962 * 187.34584 * 4 2 1 6 6 N 1.45751 * 110.48679 * 309.16273 * 5 4 2 7 7 C 1.33358 * 124.10607 * 19.10338 * 6 5 4 8 8 O 1.21277 * 118.24270 * 177.77486 * 7 6 5 9 9 C 1.50173 * 123.50966 * 357.74790 * 7 6 5 10 10 H 1.09002 * 109.39850 * 257.54299 * 9 7 6 11 11 N 1.46501 * 109.39938 * 137.71472 * 9 7 6 12 12 C 1.36939 * 119.99909 * 85.00209 * 11 9 7 13 13 H 1.07993 * 120.00040 * 359.97438 * 12 11 9 14 14 C 1.38814 * 119.99875 * 179.97438 * 12 11 9 15 15 N 1.31624 * 119.99728 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 120.00010 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.46947 * 89.99974 * 16 14 12 18 18 H 1.48497 * 109.47294 * 209.99907 * 16 14 12 19 19 H 1.48502 * 109.47261 * 330.00069 * 16 14 12 20 20 H 1.09004 * 109.46796 * 299.48371 * 1 2 3 21 21 H 1.08998 * 109.47428 * 59.48325 * 1 2 3 22 22 H 1.08997 * 109.47074 * 179.48299 * 1 2 3 23 23 H 1.09002 * 109.60400 * 67.50651 * 4 2 1 24 24 H 1.08997 * 109.60192 * 307.18507 * 4 2 1 25 25 H 1.09000 * 109.29553 * 69.47820 * 5 4 2 26 26 H 1.08998 * 109.29870 * 188.85112 * 5 4 2 27 27 H 0.96996 * 117.94572 * 199.06888 * 6 5 4 28 28 H 0.96998 * 119.99845 * 264.99322 * 11 9 7 29 29 H 0.97000 * 119.99892 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0463 -0.7332 1.2439 5 6 3.5642 -0.5640 1.3214 6 7 4.1828 -0.9209 0.0508 7 6 3.5276 -0.9806 -1.1092 8 8 4.1568 -1.2497 -2.1105 9 6 2.0524 -0.7330 -1.2418 10 1 1.5329 -1.6861 -1.3417 11 7 1.8013 0.0851 -2.4309 12 6 1.6795 -0.5099 -3.6582 13 1 1.7689 -1.5822 -3.7496 14 6 1.4410 0.2653 -4.7847 15 7 1.3325 1.5723 -4.6733 16 14 1.2755 -0.5463 -6.4590 17 1 -0.1476 -0.8941 -6.7020 18 1 1.7428 0.3910 -7.5118 19 1 2.0998 -1.7810 -6.4943 20 1 -0.3633 0.5058 0.8946 21 1 -0.3634 0.5218 -0.8853 22 1 -0.3633 -1.0276 -0.0093 23 1 1.7996 -1.7925 1.1728 24 1 1.5851 -0.3094 2.1359 25 1 3.7994 0.4737 1.5578 26 1 3.9587 -1.2077 2.1076 27 1 5.1305 -1.1275 0.0488 28 1 1.7212 1.0483 -2.3487 29 1 1.1655 2.1140 -5.4604 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306536110.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:57 Heat of formation + Delta-G solvation = -32.395438 kcal Electronic energy + Delta-G solvation = -13062.316281 eV Core-core repulsion = 10792.303108 eV Total energy + Delta-G solvation = -2270.013173 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.64864 -36.18455 -34.75594 -32.64326 -30.47075 -28.46031 -26.47811 -23.78331 -22.19114 -20.92359 -18.83374 -17.00231 -16.67428 -15.61375 -15.12552 -14.32287 -13.85853 -13.77809 -13.30938 -12.86616 -12.68391 -12.33229 -11.76621 -11.38018 -11.03984 -10.82725 -10.75462 -10.42043 -10.24015 -9.96299 -9.66683 -9.32042 -8.66610 -8.52065 -6.97922 -5.71053 -2.99653 3.46399 3.54522 3.55938 3.60809 3.87196 4.65695 4.96094 4.97653 5.12797 5.31715 5.56084 5.61589 5.74909 5.77896 5.95310 6.06925 6.10133 6.16041 6.30742 6.37381 6.73689 6.77359 7.37109 7.82065 7.97435 8.44785 9.07535 9.57704 10.04313 10.41160 11.51429 Molecular weight = 198.11amu Principal moments of inertia in cm(-1) A = 0.047016 B = 0.011159 C = 0.009760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.393974 B = 2508.689928 C = 2868.126717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.099 4.099 3 H 0.074 0.926 4 C -0.128 4.128 5 C 0.117 3.883 6 N -0.737 5.737 7 C 0.482 3.518 8 O -0.535 6.535 9 C 0.173 3.827 10 H 0.079 0.921 11 N -0.695 5.695 12 C -0.225 4.225 13 H 0.073 0.927 14 C -0.013 4.013 15 N -0.936 5.936 16 Si 0.910 3.090 17 H -0.290 1.290 18 H -0.292 1.292 19 H -0.281 1.281 20 H 0.046 0.954 21 H 0.070 0.930 22 H 0.051 0.949 23 H 0.070 0.930 24 H 0.078 0.922 25 H 0.055 0.945 26 H 0.065 0.935 27 H 0.382 0.618 28 H 0.387 0.613 29 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.310 -3.364 14.126 14.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.119 4.119 3 H 0.092 0.908 4 C -0.166 4.166 5 C -0.008 4.008 6 N -0.393 5.393 7 C 0.266 3.734 8 O -0.408 6.408 9 C 0.059 3.941 10 H 0.097 0.903 11 N -0.334 5.334 12 C -0.356 4.356 13 H 0.091 0.909 14 C -0.208 4.208 15 N -0.585 5.585 16 Si 0.741 3.259 17 H -0.217 1.217 18 H -0.218 1.218 19 H -0.206 1.206 20 H 0.065 0.935 21 H 0.089 0.911 22 H 0.070 0.930 23 H 0.088 0.912 24 H 0.097 0.903 25 H 0.074 0.926 26 H 0.084 0.916 27 H 0.216 0.784 28 H 0.222 0.778 29 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.346 -3.550 13.369 13.836 hybrid contribution 0.518 -0.060 -0.794 0.950 sum 0.863 -3.610 12.575 13.111 Atomic orbital electron populations 1.21709 0.94147 1.01743 1.01873 1.21542 0.96834 0.99876 0.93610 0.90802 1.21917 0.94194 1.01653 0.98872 1.21201 0.94055 0.99828 0.85728 1.45961 1.12723 1.72566 1.08014 1.22776 0.93442 0.75333 0.81860 1.90694 1.68084 1.46763 1.35308 1.20274 0.88632 0.96782 0.88461 0.90305 1.42288 1.83169 1.06059 1.01920 1.19238 1.39828 0.92127 0.84386 0.90943 1.24733 1.02731 0.95441 0.97918 1.69663 1.56471 1.03442 1.28876 0.86135 0.77500 0.78294 0.83996 1.21742 1.21816 1.20624 0.93462 0.91092 0.93004 0.91162 0.90347 0.92642 0.91614 0.78398 0.77820 0.93558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 9.14 37.16 0.34 -1.67 15 2 C -0.10 -1.54 2.32 -90.25 -0.21 -1.75 15 3 H 0.07 1.20 8.10 -51.93 -0.42 0.78 15 4 C -0.13 -1.48 5.31 -26.59 -0.14 -1.63 15 5 C 0.12 1.34 7.17 -4.48 -0.03 1.30 15 6 N -0.74 -11.63 5.45 -61.39 -0.33 -11.96 15 7 C 0.48 10.22 7.45 -11.87 -0.09 10.13 15 8 O -0.53 -14.15 16.95 5.56 0.09 -14.06 15 9 C 0.17 3.58 2.39 -69.14 -0.17 3.41 15 10 H 0.08 1.64 8.04 -51.93 -0.42 1.22 15 11 N -0.69 -17.99 4.78 -54.61 -0.26 -18.25 15 12 C -0.22 -6.56 9.31 -15.06 -0.14 -6.70 15 13 H 0.07 2.12 7.83 -52.49 -0.41 1.71 15 14 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 15 15 N -0.94 -29.00 13.06 55.49 0.72 -28.27 15 16 Si 0.91 23.55 29.55 -169.99 -5.02 18.53 15 17 H -0.29 -7.31 7.11 56.52 0.40 -6.91 15 18 H -0.29 -7.58 7.11 56.52 0.40 -7.18 15 19 H -0.28 -7.23 7.11 56.52 0.40 -6.83 15 20 H 0.05 0.57 8.14 -51.93 -0.42 0.14 15 21 H 0.07 1.24 8.01 -51.93 -0.42 0.82 15 22 H 0.05 0.72 8.14 -51.93 -0.42 0.29 15 23 H 0.07 0.80 8.12 -51.93 -0.42 0.38 15 24 H 0.08 0.71 8.14 -51.93 -0.42 0.29 15 25 H 0.06 0.59 8.14 -51.93 -0.42 0.17 15 26 H 0.07 0.57 8.14 -51.93 -0.42 0.15 15 27 H 0.38 5.56 8.80 -40.82 -0.36 5.20 15 28 H 0.39 10.49 7.78 -40.82 -0.32 10.18 15 29 H 0.25 7.63 8.31 -40.82 -0.34 7.29 15 LS Contribution 245.39 15.07 3.70 3.70 Total: -1.00 -34.34 245.39 -5.65 -39.98 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -4.01 Total: 7.71 kcal Atomic # 6 Polarization: 3.15 SS G_CDS: -0.53 Total: 2.62 kcal Atomic # 7 Polarization: -58.62 SS G_CDS: 0.13 Total: -58.49 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: 0.09 Total: -14.06 kcal Atomic # 14 Polarization: 23.55 SS G_CDS: -5.02 Total: 18.53 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -34.34 -5.65 -39.98 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306536110.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.588 kcal (2) G-P(sol) polarization free energy of solvation -34.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds