Wall clock time and date at job start Sun Mar 29 2020 21:38:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.70153 * 2 1 4 4 C 1.53345 * 109.67708 * 120.51677 * 2 1 3 5 5 C 1.52924 * 108.80962 * 187.34584 * 4 2 1 6 6 N 1.45751 * 110.48679 * 309.16273 * 5 4 2 7 7 C 1.33358 * 124.10607 * 19.10338 * 6 5 4 8 8 O 1.21277 * 118.24270 * 177.77486 * 7 6 5 9 9 C 1.50173 * 123.50966 * 357.74790 * 7 6 5 10 10 H 1.09002 * 109.39850 * 257.54299 * 9 7 6 11 11 N 1.46501 * 109.39938 * 137.71472 * 9 7 6 12 12 C 1.36939 * 119.99909 * 85.00209 * 11 9 7 13 13 H 1.07993 * 120.00040 * 359.97438 * 12 11 9 14 14 C 1.38814 * 119.99875 * 179.97438 * 12 11 9 15 15 N 1.31624 * 119.99728 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 120.00010 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.46947 * 89.99974 * 16 14 12 18 18 H 1.48497 * 109.47294 * 209.99907 * 16 14 12 19 19 H 1.48502 * 109.47261 * 330.00069 * 16 14 12 20 20 H 1.09004 * 109.46796 * 299.48371 * 1 2 3 21 21 H 1.08998 * 109.47428 * 59.48325 * 1 2 3 22 22 H 1.08997 * 109.47074 * 179.48299 * 1 2 3 23 23 H 1.09002 * 109.60400 * 67.50651 * 4 2 1 24 24 H 1.08997 * 109.60192 * 307.18507 * 4 2 1 25 25 H 1.09000 * 109.29553 * 69.47820 * 5 4 2 26 26 H 1.08998 * 109.29870 * 188.85112 * 5 4 2 27 27 H 0.96996 * 117.94572 * 199.06888 * 6 5 4 28 28 H 0.96998 * 119.99845 * 264.99322 * 11 9 7 29 29 H 0.97000 * 119.99892 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0463 -0.7332 1.2439 5 6 3.5642 -0.5640 1.3214 6 7 4.1828 -0.9209 0.0508 7 6 3.5276 -0.9806 -1.1092 8 8 4.1568 -1.2497 -2.1105 9 6 2.0524 -0.7330 -1.2418 10 1 1.5329 -1.6861 -1.3417 11 7 1.8013 0.0851 -2.4309 12 6 1.6795 -0.5099 -3.6582 13 1 1.7689 -1.5822 -3.7496 14 6 1.4410 0.2653 -4.7847 15 7 1.3325 1.5723 -4.6733 16 14 1.2755 -0.5463 -6.4590 17 1 -0.1476 -0.8941 -6.7020 18 1 1.7428 0.3910 -7.5118 19 1 2.0998 -1.7810 -6.4943 20 1 -0.3633 0.5058 0.8946 21 1 -0.3634 0.5218 -0.8853 22 1 -0.3633 -1.0276 -0.0093 23 1 1.7996 -1.7925 1.1728 24 1 1.5851 -0.3094 2.1359 25 1 3.7994 0.4737 1.5578 26 1 3.9587 -1.2077 2.1076 27 1 5.1305 -1.1275 0.0488 28 1 1.7212 1.0483 -2.3487 29 1 1.1655 2.1140 -5.4604 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306536110.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:56 Heat of formation + Delta-G solvation = -59.652229 kcal Electronic energy + Delta-G solvation = -13063.498224 eV Core-core repulsion = 10792.303108 eV Total energy + Delta-G solvation = -2271.195116 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.17210 -37.71369 -36.47291 -34.38549 -32.35487 -29.75106 -28.11884 -25.63151 -23.66836 -22.29183 -20.30276 -19.04224 -18.09350 -17.13127 -16.87961 -15.95945 -15.57546 -15.29438 -14.99913 -14.47169 -14.02701 -13.60532 -13.09017 -13.05616 -12.83547 -12.52571 -12.23709 -12.13481 -11.90873 -11.59858 -11.43757 -11.27116 -10.55246 -9.87311 -9.08191 -7.97020 -5.25339 1.42513 1.46066 1.55101 1.84451 2.51869 2.57529 3.38925 3.76241 3.82440 3.95944 4.04132 4.26061 4.51433 4.61988 4.70097 4.86913 4.96695 5.04171 5.11840 5.23205 5.44597 5.52029 5.54506 6.07157 6.22147 6.52724 7.31094 7.49177 7.96634 8.22560 9.25962 Molecular weight = 198.11amu Principal moments of inertia in cm(-1) A = 0.047016 B = 0.011159 C = 0.009760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.393974 B = 2508.689928 C = 2868.126717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.092 4.092 3 H 0.066 0.934 4 C -0.121 4.121 5 C 0.107 3.893 6 N -0.720 5.720 7 C 0.479 3.521 8 O -0.601 6.601 9 C 0.165 3.835 10 H 0.073 0.927 11 N -0.708 5.708 12 C -0.226 4.226 13 H 0.063 0.937 14 C -0.074 4.074 15 N -0.969 5.969 16 Si 0.971 3.029 17 H -0.277 1.277 18 H -0.293 1.293 19 H -0.281 1.281 20 H 0.082 0.918 21 H 0.032 0.968 22 H 0.058 0.942 23 H 0.076 0.924 24 H 0.119 0.881 25 H 0.072 0.928 26 H 0.109 0.891 27 H 0.392 0.608 28 H 0.377 0.623 29 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.201 -3.956 16.628 17.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.111 4.111 3 H 0.084 0.916 4 C -0.159 4.159 5 C -0.016 4.016 6 N -0.372 5.372 7 C 0.264 3.736 8 O -0.481 6.481 9 C 0.052 3.948 10 H 0.090 0.910 11 N -0.347 5.347 12 C -0.358 4.358 13 H 0.081 0.919 14 C -0.266 4.266 15 N -0.619 5.619 16 Si 0.800 3.200 17 H -0.203 1.203 18 H -0.219 1.219 19 H -0.207 1.207 20 H 0.101 0.899 21 H 0.051 0.949 22 H 0.077 0.923 23 H 0.094 0.906 24 H 0.138 0.862 25 H 0.091 0.909 26 H 0.127 0.873 27 H 0.227 0.773 28 H 0.210 0.790 29 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 0.240 -4.167 15.979 16.515 hybrid contribution 0.588 0.085 -1.394 1.516 sum 0.828 -4.082 14.584 15.168 Atomic orbital electron populations 1.21662 0.93425 1.02107 1.01752 1.21507 0.97387 0.99246 0.92970 0.91559 1.21955 0.94263 1.01687 0.97947 1.21659 0.93957 1.01919 0.84074 1.45779 1.13173 1.70155 1.08133 1.22564 0.93494 0.74966 0.82547 1.90662 1.69273 1.50158 1.37998 1.20576 0.88633 0.96605 0.89002 0.90963 1.42339 1.83786 1.05903 1.02649 1.19445 1.38437 0.91823 0.86087 0.91878 1.25505 1.03637 0.96122 1.01326 1.69797 1.58218 1.04526 1.29408 0.85174 0.77900 0.77129 0.79779 1.20347 1.21922 1.20656 0.89930 0.94883 0.92330 0.90565 0.86241 0.90927 0.87311 0.77331 0.78987 0.93945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.63 9.14 71.98 0.66 -2.97 15 2 C -0.09 -2.67 2.32 -10.55 -0.02 -2.69 15 3 H 0.07 2.05 8.10 -2.39 -0.02 2.03 15 4 C -0.12 -2.24 5.31 30.68 0.16 -2.07 15 5 C 0.11 1.93 7.17 86.50 0.62 2.55 15 6 N -0.72 -21.04 5.45 -467.32 -2.55 -23.58 15 7 C 0.48 20.27 7.45 87.71 0.65 20.92 15 8 O -0.60 -32.65 16.95 -3.02 -0.05 -32.70 15 9 C 0.16 6.82 2.39 44.21 0.11 6.93 15 10 H 0.07 3.05 8.04 -2.39 -0.02 3.03 15 11 N -0.71 -37.76 4.78 -326.69 -1.56 -39.32 15 12 C -0.23 -13.60 9.31 84.03 0.78 -12.81 15 13 H 0.06 3.83 7.83 -2.91 -0.02 3.80 15 14 C -0.07 -4.53 5.50 84.86 0.47 -4.06 15 15 N -0.97 -61.65 13.06 21.65 0.28 -61.37 15 16 Si 0.97 49.50 29.55 68.60 2.03 51.53 15 17 H -0.28 -13.40 7.11 99.48 0.71 -12.69 15 18 H -0.29 -14.84 7.11 99.48 0.71 -14.14 15 19 H -0.28 -14.16 7.11 99.48 0.71 -13.45 15 20 H 0.08 1.68 8.14 -2.38 -0.02 1.66 15 21 H 0.03 1.14 8.01 -2.39 -0.02 1.13 15 22 H 0.06 1.51 8.14 -2.39 -0.02 1.49 15 23 H 0.08 1.39 8.12 -2.39 -0.02 1.37 15 24 H 0.12 1.38 8.14 -2.39 -0.02 1.36 15 25 H 0.07 1.18 8.14 -2.39 -0.02 1.16 15 26 H 0.11 1.20 8.14 -2.39 -0.02 1.18 15 27 H 0.39 10.54 8.80 -92.71 -0.82 9.72 15 28 H 0.38 21.21 7.78 -92.71 -0.72 20.49 15 29 H 0.25 15.46 8.31 -92.71 -0.77 14.69 15 Total: -1.00 -78.02 245.39 1.19 -76.82 By element: Atomic # 1 Polarization: 23.22 SS G_CDS: -0.38 Total: 22.84 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: 3.42 Total: 5.79 kcal Atomic # 7 Polarization: -120.45 SS G_CDS: -3.82 Total: -124.27 kcal Atomic # 8 Polarization: -32.65 SS G_CDS: -0.05 Total: -32.70 kcal Atomic # 14 Polarization: 49.50 SS G_CDS: 2.03 Total: 51.53 kcal Total: -78.02 1.19 -76.82 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306536110.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.172 kcal (2) G-P(sol) polarization free energy of solvation -78.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds