Wall clock time and date at job start Sun Mar 29 2020 21:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31439 * 1 3 3 Si 1.86800 * 119.99836 * 2 1 4 4 H 1.48506 * 109.46949 * 269.99470 * 3 2 1 5 5 H 1.48497 * 109.47540 * 29.99572 * 3 2 1 6 6 H 1.48506 * 109.47048 * 149.99843 * 3 2 1 7 7 C 1.38748 * 120.00072 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00184 * 0.02562 * 7 2 1 9 9 O 1.34924 * 120.00202 * 180.02562 * 7 2 1 10 10 C 1.34308 * 116.99813 * 179.97438 * 9 7 2 11 11 O 1.21212 * 120.00613 * 0.02562 * 10 9 7 12 12 C 1.50706 * 119.99773 * 179.97438 * 10 9 7 13 13 C 1.52997 * 109.47238 * 300.00517 * 12 10 9 14 14 C 1.52996 * 109.46947 * 179.97438 * 13 12 10 15 15 C 1.53000 * 109.47328 * 60.00057 * 14 13 12 16 16 C 1.53001 * 109.46886 * 300.00201 * 15 14 13 17 17 C 1.52996 * 109.47302 * 59.99782 * 16 15 14 18 18 H 0.97002 * 119.99959 * 0.02562 * 1 2 3 19 19 H 1.09001 * 109.46953 * 60.00129 * 12 10 9 20 20 H 1.09001 * 109.46832 * 299.99686 * 13 12 10 21 21 H 1.09004 * 109.47261 * 59.99705 * 13 12 10 22 22 H 1.08992 * 109.47554 * 299.99696 * 14 13 12 23 23 H 1.09000 * 109.46870 * 179.97438 * 14 13 12 24 24 H 1.08992 * 109.47399 * 179.97438 * 15 14 13 25 25 H 1.09001 * 109.47194 * 59.99524 * 15 14 13 26 26 H 1.09001 * 109.46652 * 299.99655 * 16 15 14 27 27 H 1.09004 * 109.47086 * 179.97438 * 16 15 14 28 28 H 1.09000 * 109.46870 * 180.02562 * 17 16 15 29 29 H 1.08992 * 109.47554 * 60.00308 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2483 1.6178 0.0000 4 1 2.4959 2.0464 -1.4001 5 1 1.4458 2.6527 0.6999 6 1 3.5459 1.4402 0.7001 7 6 2.0081 -1.2016 0.0005 8 1 1.4682 -2.1369 0.0005 9 8 3.3574 -1.2016 0.0011 10 6 3.9671 -2.3983 0.0021 11 8 3.3070 -3.4149 0.0021 12 6 5.4721 -2.4772 0.0022 13 6 6.0191 -1.7847 -1.2476 14 6 7.5470 -1.8643 -1.2472 15 6 7.9814 -3.3313 -1.2457 16 6 7.4342 -4.0239 0.0041 17 6 5.9063 -3.9443 0.0036 18 1 -0.4850 0.8401 -0.0004 19 1 5.8618 -1.9824 0.8917 20 1 5.6294 -2.2795 -2.1372 21 1 5.7101 -0.7394 -1.2485 22 1 7.9364 -1.3692 -0.3577 23 1 7.9367 -1.3712 -2.1378 24 1 9.0698 -3.3880 -1.2458 25 1 7.5920 -3.8264 -2.1353 26 1 7.8236 -3.5287 0.8936 27 1 7.7432 -5.0692 0.0049 28 1 5.5166 -4.4373 0.8942 29 1 5.5169 -4.4394 -0.8859 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306559776.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:26:50 Heat of formation + Delta-G solvation = -109.746168 kcal Electronic energy + Delta-G solvation = -12836.633136 eV Core-core repulsion = 10530.973033 eV Total energy + Delta-G solvation = -2305.660103 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.56223 -37.65560 -35.20264 -32.27265 -30.93178 -30.54809 -25.69053 -23.16594 -22.36191 -20.14565 -19.17856 -17.91278 -16.64083 -15.42907 -14.96931 -14.44985 -14.08849 -13.86468 -13.60548 -12.92185 -12.44917 -12.12899 -12.01610 -11.91152 -11.28502 -11.00786 -10.97186 -10.53418 -10.41693 -10.27557 -10.19784 -9.94132 -9.63380 -8.98652 -8.63662 -6.32619 -4.07834 3.17743 3.26065 3.38301 3.46714 4.17843 4.28790 4.86235 4.88245 5.05145 5.14602 5.36322 5.42171 5.60223 5.62191 5.66207 5.77594 5.88875 6.12389 6.16830 6.21154 6.32688 6.35523 6.49579 6.60754 6.67689 7.80500 8.08784 8.68654 9.06685 9.76209 10.76316 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.053462 B = 0.010023 C = 0.008765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.609139 B = 2792.880774 C = 3193.630768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.065 3.935 3 Si 0.904 3.096 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.381 4.381 8 H 0.108 0.892 9 O -0.253 6.253 10 C 0.413 3.587 11 O -0.541 6.541 12 C -0.070 4.070 13 C -0.112 4.112 14 C -0.117 4.117 15 C -0.121 4.121 16 C -0.118 4.118 17 C -0.100 4.100 18 H 0.278 0.722 19 H 0.093 0.907 20 H 0.066 0.934 21 H 0.074 0.926 22 H 0.063 0.937 23 H 0.062 0.938 24 H 0.058 0.942 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.068 0.932 29 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.413 -2.048 -1.355 15.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.138 4.138 3 Si 0.729 3.271 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.457 4.457 8 H 0.125 0.875 9 O -0.161 6.161 10 C 0.258 3.742 11 O -0.436 6.436 12 C -0.090 4.090 13 C -0.150 4.150 14 C -0.155 4.155 15 C -0.159 4.159 16 C -0.155 4.155 17 C -0.138 4.138 18 H 0.089 0.911 19 H 0.112 0.888 20 H 0.085 0.915 21 H 0.093 0.907 22 H 0.081 0.919 23 H 0.081 0.919 24 H 0.077 0.923 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 15.037 -2.171 -1.352 15.253 hybrid contribution 0.058 0.759 0.024 0.762 sum 15.095 -1.411 -1.328 15.219 Atomic orbital electron populations 1.69612 1.05706 1.28271 1.48159 1.24538 0.94991 0.98603 0.95700 0.86235 0.80331 0.81607 0.78890 1.19884 1.20820 1.18397 1.20653 0.76430 0.96869 1.51731 0.87474 1.83528 1.23733 1.31597 1.77276 1.23066 0.90576 0.82477 0.78045 1.90582 1.67134 1.36390 1.49484 1.20829 0.89444 0.98129 1.00571 1.21524 0.95068 1.01433 0.96961 1.21542 0.95595 0.96466 1.01855 1.21570 0.99798 0.96007 0.98491 1.21555 0.95584 1.00289 0.98116 1.21365 0.94590 0.94403 1.03442 0.91138 0.88842 0.91490 0.90681 0.91869 0.91890 0.92303 0.91948 0.92013 0.91916 0.91286 0.91208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.51 13.96 55.48 0.77 -25.74 15 2 C 0.06 1.90 5.49 -17.53 -0.10 1.80 15 3 Si 0.90 21.76 28.62 -169.99 -4.86 16.90 15 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 15 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 15 6 H -0.26 -6.12 7.11 56.52 0.40 -5.71 15 7 C -0.38 -11.61 10.10 30.92 0.31 -11.30 15 8 H 0.11 3.60 7.09 -52.48 -0.37 3.23 15 9 O -0.25 -6.83 8.48 -20.71 -0.18 -7.01 15 10 C 0.41 9.98 7.20 36.01 0.26 10.24 15 11 O -0.54 -14.77 15.22 -19.05 -0.29 -15.06 15 12 C -0.07 -1.23 2.63 -91.77 -0.24 -1.48 15 13 C -0.11 -1.72 5.14 -26.73 -0.14 -1.86 15 14 C -0.12 -1.37 5.92 -26.73 -0.16 -1.53 15 15 C -0.12 -1.31 5.92 -26.73 -0.16 -1.47 15 16 C -0.12 -1.37 5.92 -26.73 -0.16 -1.52 15 17 C -0.10 -1.54 4.49 -26.73 -0.12 -1.66 15 18 H 0.28 7.67 8.31 -40.82 -0.34 7.33 15 19 H 0.09 1.50 8.14 -51.93 -0.42 1.08 15 20 H 0.07 1.05 8.14 -51.93 -0.42 0.63 15 21 H 0.07 1.22 8.11 -51.93 -0.42 0.79 15 22 H 0.06 0.70 8.14 -51.93 -0.42 0.27 15 23 H 0.06 0.66 8.14 -51.93 -0.42 0.24 15 24 H 0.06 0.54 8.14 -51.93 -0.42 0.11 15 25 H 0.06 0.68 8.14 -51.93 -0.42 0.26 15 26 H 0.06 0.67 8.14 -51.93 -0.42 0.25 15 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 15 28 H 0.07 1.11 8.10 -51.93 -0.42 0.69 15 29 H 0.07 1.14 8.10 -51.93 -0.42 0.72 15 LS Contribution 245.27 15.07 3.70 3.70 Total: -1.00 -32.52 245.27 -5.51 -38.03 By element: Atomic # 1 Polarization: 2.12 SS G_CDS: -4.15 Total: -2.03 kcal Atomic # 6 Polarization: -8.28 SS G_CDS: -0.50 Total: -8.78 kcal Atomic # 7 Polarization: -26.51 SS G_CDS: 0.77 Total: -25.74 kcal Atomic # 8 Polarization: -21.60 SS G_CDS: -0.47 Total: -22.06 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.86 Total: 16.90 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -32.52 -5.51 -38.03 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306559776.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.720 kcal (2) G-P(sol) polarization free energy of solvation -32.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds