Wall clock time and date at job start Sun Mar 29 2020 22:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 113.99629 * 2 1 4 4 C 1.52999 * 112.94846 * 48.40917 * 3 2 1 5 5 C 1.53951 * 113.74300 * 276.67744 * 3 2 1 6 6 N 1.47583 * 86.11667 * 222.05014 * 5 3 2 7 7 C 1.34779 * 134.49231 * 204.63797 * 6 5 3 8 8 O 1.21692 * 119.99986 * 179.97438 * 7 6 5 9 9 C 1.46371 * 119.99760 * 0.02562 * 7 6 5 10 10 H 1.07993 * 120.00449 * 359.97438 * 9 7 6 11 11 C 1.40054 * 119.99942 * 180.02562 * 9 7 6 12 12 N 1.30677 * 119.99817 * 359.97438 * 11 9 7 13 13 Si 1.86795 * 120.00021 * 179.97438 * 11 9 7 14 14 H 1.48505 * 109.47271 * 59.99783 * 13 11 9 15 15 H 1.48507 * 109.46994 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.47253 * 299.99485 * 13 11 9 17 17 C 1.47585 * 91.01809 * 24.63871 * 6 5 3 18 18 H 1.09002 * 109.47382 * 59.99956 * 1 2 3 19 19 H 1.09001 * 109.46938 * 299.99942 * 1 2 3 20 20 H 1.09004 * 109.46926 * 180.02562 * 1 2 3 21 21 H 1.08998 * 109.47248 * 69.66163 * 4 3 2 22 22 H 1.09001 * 109.47545 * 189.66733 * 4 3 2 23 23 H 1.09005 * 109.46852 * 309.66857 * 4 3 2 24 24 H 1.08999 * 113.76556 * 336.34660 * 5 3 2 25 25 H 1.08989 * 113.77283 * 107.74865 * 5 3 2 26 26 H 0.96997 * 119.99781 * 180.02562 * 12 11 9 27 27 H 1.08993 * 113.77008 * 221.06346 * 17 6 5 28 28 H 1.08991 * 113.76985 * 89.65750 * 17 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.3984 2.2308 1.0537 5 6 2.1125 1.9384 -1.3996 6 7 3.4545 2.3925 -0.9862 7 6 4.2670 3.4010 -1.3594 8 8 5.3529 3.5364 -0.8270 9 6 3.8427 4.3342 -2.4042 10 1 2.8789 4.2143 -2.8764 11 6 4.6872 5.3819 -2.7924 12 7 5.8536 5.5267 -2.2214 13 14 4.1460 6.5724 -4.1263 14 1 2.8974 7.2559 -3.7030 15 1 5.2114 7.5825 -4.3501 16 1 3.8989 5.8255 -5.3858 17 6 3.5497 1.2986 0.0000 18 1 -0.3634 0.5138 -0.8900 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 -1.0277 0.0005 21 1 1.6932 1.8946 2.0477 22 1 1.7540 3.2487 0.8940 23 1 0.3118 2.2083 0.9701 24 1 2.1257 1.2106 -2.2110 25 1 1.4060 2.7512 -1.5670 26 1 6.4383 6.2525 -2.4899 27 1 3.9903 1.6007 0.9500 28 1 3.9848 0.3830 -0.4002 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306617582.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:37 Heat of formation + Delta-G solvation = -71.242653 kcal Electronic energy + Delta-G solvation = -12943.909178 eV Core-core repulsion = 10574.492802 eV Total energy + Delta-G solvation = -2369.416377 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 199.100 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.22135 -38.64626 -36.85668 -34.67573 -31.28490 -29.23110 -27.96473 -27.16817 -26.29680 -21.79775 -20.23351 -18.75779 -17.89277 -17.40278 -16.57330 -16.28805 -15.85553 -15.34569 -14.96658 -14.30980 -14.03301 -13.85844 -13.24726 -13.06519 -12.90038 -12.85706 -12.70369 -12.51317 -12.19393 -12.04685 -11.43906 -10.96156 -10.58419 -9.93810 -9.26309 -8.34569 -6.91761 1.37897 1.41794 1.54179 2.16327 2.37540 2.44857 2.87480 3.34359 3.54412 3.79976 4.10765 4.52859 4.55067 4.58260 4.61659 4.66022 4.74896 4.87166 4.92778 4.94804 5.03614 5.18436 5.26521 5.91027 6.28119 6.36483 6.80660 7.49035 8.37168 8.61206 Molecular weight = 199.10amu Principal moments of inertia in cm(-1) A = 0.056507 B = 0.009280 C = 0.008492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.395833 B = 3016.434324 C = 3296.440258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.387 6.387 3 C 0.096 3.904 4 C -0.150 4.150 5 C 0.093 3.907 6 N -0.672 5.672 7 C 0.561 3.439 8 O -0.632 6.632 9 C -0.563 4.563 10 H 0.085 0.915 11 C 0.028 3.972 12 N -0.822 5.822 13 Si 1.003 2.997 14 H -0.251 1.251 15 H -0.272 1.272 16 H -0.254 1.254 17 C 0.110 3.890 18 H 0.049 0.951 19 H 0.059 0.941 20 H 0.103 0.897 21 H 0.076 0.924 22 H 0.052 0.948 23 H 0.093 0.907 24 H 0.079 0.921 25 H 0.081 0.919 26 H 0.277 0.723 27 H 0.065 0.935 28 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.426 -5.899 1.435 14.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.306 6.306 3 C 0.055 3.945 4 C -0.207 4.207 5 C -0.030 4.030 6 N -0.413 5.413 7 C 0.369 3.631 8 O -0.519 6.519 9 C -0.599 4.599 10 H 0.103 0.897 11 C -0.187 4.187 12 N -0.451 5.451 13 Si 0.821 3.179 14 H -0.175 1.175 15 H -0.196 1.196 16 H -0.178 1.178 17 C -0.013 4.013 18 H 0.068 0.932 19 H 0.077 0.923 20 H 0.121 0.879 21 H 0.095 0.905 22 H 0.072 0.928 23 H 0.112 0.888 24 H 0.097 0.903 25 H 0.099 0.901 26 H 0.087 0.913 27 H 0.083 0.917 28 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -12.439 -5.752 1.699 13.809 hybrid contribution 0.198 0.571 -0.462 0.761 sum -12.241 -5.181 1.237 13.349 Atomic orbital electron populations 1.23029 0.79324 1.04099 1.01290 1.87920 1.21913 1.25880 1.94853 1.23264 0.92375 0.84057 0.94774 1.21952 1.02284 0.98428 0.98003 1.23597 0.84466 0.97681 0.97278 1.49768 1.20261 1.28820 1.42414 1.18403 0.82118 0.79646 0.82898 1.90557 1.24677 1.76239 1.60445 1.21269 1.05198 1.12636 1.20836 0.89686 1.27056 0.93611 0.99206 0.98859 1.70184 1.09006 1.28199 1.37725 0.85009 0.78953 0.76703 0.77248 1.17518 1.19630 1.17791 1.23005 0.94477 0.90501 0.93349 0.93226 0.92278 0.87852 0.90539 0.92844 0.88789 0.90317 0.90082 0.91312 0.91653 0.90737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 10.35 113.37 1.17 1.51 15 2 O -0.39 -10.85 10.67 -148.98 -1.59 -12.44 15 3 C 0.10 3.07 1.44 -10.13 -0.01 3.05 15 4 C -0.15 -4.11 8.80 71.98 0.63 -3.48 15 5 C 0.09 3.43 7.79 86.48 0.67 4.11 15 6 N -0.67 -32.80 3.47 -845.11 -2.93 -35.73 15 7 C 0.56 34.47 7.98 86.36 0.69 35.16 15 8 O -0.63 -44.65 15.75 -4.32 -0.07 -44.72 15 9 C -0.56 -32.95 9.33 24.83 0.23 -32.72 15 10 H 0.09 4.48 7.67 -2.91 -0.02 4.46 15 11 C 0.03 1.58 5.50 85.31 0.47 2.05 15 12 N -0.82 -51.24 11.83 21.84 0.26 -50.98 15 13 Si 1.00 41.16 29.56 68.60 2.03 43.18 15 14 H -0.25 -9.60 7.11 99.48 0.71 -8.89 15 15 H -0.27 -10.69 7.11 99.48 0.71 -9.99 15 16 H -0.25 -9.81 7.11 99.48 0.71 -9.10 15 17 C 0.11 4.47 8.24 86.48 0.71 5.19 15 18 H 0.05 0.86 8.14 -2.39 -0.02 0.85 15 19 H 0.06 0.94 6.40 -2.39 -0.02 0.92 15 20 H 0.10 1.49 8.14 -2.38 -0.02 1.47 15 21 H 0.08 1.92 8.14 -2.39 -0.02 1.90 15 22 H 0.05 1.77 8.00 -2.39 -0.02 1.75 15 23 H 0.09 1.96 6.27 -2.38 -0.01 1.94 15 24 H 0.08 2.73 8.14 -2.39 -0.02 2.71 15 25 H 0.08 2.79 8.10 -2.39 -0.02 2.77 15 26 H 0.28 15.55 8.29 -92.71 -0.77 14.78 15 27 H 0.07 2.70 8.10 -2.39 -0.02 2.68 15 28 H 0.07 2.92 8.14 -2.39 -0.02 2.90 15 Total: -1.00 -78.09 245.56 3.41 -74.68 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: 1.14 Total: 11.15 kcal Atomic # 6 Polarization: 10.29 SS G_CDS: 4.57 Total: 14.86 kcal Atomic # 7 Polarization: -84.04 SS G_CDS: -2.67 Total: -86.71 kcal Atomic # 8 Polarization: -55.50 SS G_CDS: -1.66 Total: -57.16 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 2.03 Total: 43.18 kcal Total: -78.09 3.41 -74.68 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306617582.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.433 kcal (2) G-P(sol) polarization free energy of solvation -78.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds