Wall clock time and date at job start Sun Mar 29 2020 21:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46820 * 124.33412 * 2 1 4 4 C 1.54479 * 105.44548 * 196.99990 * 3 2 1 5 5 H 1.08998 * 110.96669 * 92.77239 * 4 3 2 6 6 N 1.46901 * 110.97037 * 216.49296 * 4 3 2 7 7 C 1.46895 * 110.99820 * 201.91085 * 6 4 3 8 8 C 1.50706 * 109.47182 * 180.02562 * 7 6 4 9 9 H 1.08005 * 119.99758 * 0.02562 * 8 7 6 10 10 C 1.37871 * 120.00102 * 180.02562 * 8 7 6 11 11 N 1.31516 * 120.00217 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99766 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.47057 * 179.97438 * 12 10 8 14 14 H 1.48500 * 109.47389 * 300.00068 * 12 10 8 15 15 H 1.48504 * 109.47102 * 60.00417 * 12 10 8 16 16 C 1.54630 * 101.79683 * 334.63271 * 4 3 2 17 17 C 1.34411 * 124.34670 * 180.02562 * 2 1 3 18 18 O 1.21277 * 124.94859 * 359.54879 * 17 2 1 19 19 H 1.09001 * 109.47547 * 179.97438 * 1 2 3 20 20 H 1.09003 * 109.47070 * 299.93371 * 1 2 3 21 21 H 1.09000 * 109.47488 * 59.92931 * 1 2 3 22 22 H 1.09004 * 110.23600 * 78.02554 * 3 2 1 23 23 H 1.09001 * 110.28741 * 316.00901 * 3 2 1 24 24 H 1.00902 * 111.00171 * 325.86698 * 6 4 3 25 25 H 1.09001 * 109.47613 * 60.00522 * 7 6 4 26 26 H 1.09006 * 109.47521 * 300.00140 * 7 6 4 27 27 H 0.97001 * 119.99646 * 359.97438 * 11 10 8 28 28 H 1.09001 * 110.48298 * 143.45459 * 16 4 3 29 29 H 1.09004 * 110.48381 * 265.96587 * 16 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2124 0.0000 4 6 3.7010 0.7490 -0.4353 5 1 3.8274 0.8459 -1.5136 6 7 4.7446 1.4929 0.2825 7 6 6.0161 1.4576 -0.4523 8 6 7.0603 2.2288 0.3132 9 1 6.8050 2.6978 1.2520 10 6 8.3415 2.3355 -0.1848 11 7 8.6523 1.7648 -1.3281 12 14 9.6356 3.2921 0.7638 13 1 10.9210 3.2563 0.0211 14 1 9.1934 4.7009 0.9213 15 1 9.8214 2.6788 2.1035 16 6 3.6897 -0.7378 -0.0108 17 6 2.2233 -1.1098 -0.0005 18 8 1.7946 -2.2442 0.0068 19 1 -0.3634 -1.0276 -0.0005 20 1 -0.3633 0.5128 0.8906 21 1 -0.3634 0.5149 -0.8893 22 1 2.3305 1.6434 1.0005 23 1 1.8988 1.9393 -0.7101 24 1 4.4551 2.4433 0.4587 25 1 5.8801 1.9075 -1.4358 26 1 6.3406 0.4233 -0.5676 27 1 7.9802 1.2684 -1.8209 28 1 4.2325 -1.3454 -0.7349 29 1 4.1216 -0.8540 0.9833 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306681290.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:09 Heat of formation + Delta-G solvation = -36.982030 kcal Electronic energy + Delta-G solvation = -12452.700087 eV Core-core repulsion = 10182.488024 eV Total energy + Delta-G solvation = -2270.212062 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.21797 -36.76014 -34.94847 -32.91907 -30.73156 -27.52636 -26.54898 -24.96294 -22.19630 -20.76952 -19.47257 -17.02550 -16.55872 -16.36881 -15.31701 -14.50421 -14.08976 -13.70471 -13.56664 -13.41669 -13.13361 -12.45792 -12.32704 -11.99688 -11.65946 -11.25187 -10.93939 -10.72861 -10.53789 -10.10739 -9.71925 -8.75675 -8.68183 -8.48987 -7.66743 -6.44110 -4.14333 2.71212 3.05359 3.41516 3.44094 3.62537 4.42533 4.52655 4.63098 4.82394 5.18323 5.23565 5.30028 5.33111 5.49161 5.57849 5.66133 5.78205 6.05229 6.22488 6.51575 6.82828 7.01201 7.11192 7.61170 7.99421 8.24514 8.30184 8.47610 8.78851 9.57482 10.95770 Molecular weight = 198.11amu Principal moments of inertia in cm(-1) A = 0.078494 B = 0.006778 C = 0.006529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 356.629829 B = 4130.043593 C = 4287.585838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.625 5.625 3 C 0.103 3.897 4 C 0.073 3.927 5 H 0.059 0.941 6 N -0.669 5.669 7 C 0.183 3.817 8 C -0.599 4.599 9 H 0.057 0.943 10 C 0.016 3.984 11 N -0.911 5.911 12 Si 1.074 2.926 13 H -0.283 1.283 14 H -0.288 1.288 15 H -0.287 1.287 16 C -0.144 4.144 17 C 0.521 3.479 18 O -0.543 6.543 19 H 0.080 0.920 20 H 0.059 0.941 21 H 0.059 0.941 22 H 0.080 0.920 23 H 0.075 0.925 24 H 0.337 0.663 25 H -0.021 1.021 26 H 0.022 0.978 27 H 0.267 0.733 28 H 0.096 0.904 29 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.710 0.663 1.860 12.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.360 5.360 3 C -0.020 4.020 4 C -0.039 4.039 5 H 0.076 0.924 6 N -0.301 5.301 7 C 0.056 3.944 8 C -0.637 4.637 9 H 0.076 0.924 10 C -0.188 4.188 11 N -0.547 5.547 12 Si 0.902 3.098 13 H -0.208 1.208 14 H -0.214 1.214 15 H -0.213 1.213 16 C -0.185 4.185 17 C 0.310 3.690 18 O -0.421 6.421 19 H 0.099 0.901 20 H 0.078 0.922 21 H 0.077 0.923 22 H 0.099 0.901 23 H 0.093 0.907 24 H 0.155 0.845 25 H -0.003 1.003 26 H 0.040 0.960 27 H 0.077 0.923 28 H 0.114 0.886 29 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -11.261 0.022 2.234 11.481 hybrid contribution -1.880 0.216 -0.733 2.029 sum -13.141 0.238 1.501 13.228 Atomic orbital electron populations 1.21523 0.78577 1.03484 1.01272 1.48185 1.06283 1.07654 1.73914 1.22307 0.90453 0.86917 1.02371 1.22394 0.90486 0.94008 0.96992 0.92351 1.60685 1.02791 1.18645 1.47959 1.19743 0.85961 0.96986 0.91696 1.21970 0.96634 1.36185 1.08931 0.92450 1.25875 0.98727 0.97371 0.96864 1.70805 1.37718 1.32203 1.14008 0.83470 0.75665 0.75585 0.75120 1.20807 1.21438 1.21316 1.22449 0.92859 0.97378 1.05790 1.21139 0.89677 0.84049 0.74123 1.90675 1.78962 1.21264 1.51198 0.90092 0.92222 0.92284 0.90136 0.90705 0.84527 1.00296 0.96017 0.92253 0.88553 0.86573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.98 11.14 59.85 0.67 1.64 15 2 N -0.63 -8.55 3.33 -180.24 -0.60 -9.15 15 3 C 0.10 1.31 6.83 -3.09 -0.02 1.29 15 4 C 0.07 1.17 3.45 -66.08 -0.23 0.94 15 5 H 0.06 0.97 7.87 -51.93 -0.41 0.56 15 6 N -0.67 -13.05 6.29 -106.26 -0.67 -13.72 15 7 C 0.18 4.50 4.63 -4.98 -0.02 4.48 15 8 C -0.60 -16.48 9.32 -34.44 -0.32 -16.80 15 9 H 0.06 1.56 7.81 -52.48 -0.41 1.15 15 10 C 0.02 0.44 5.46 -17.82 -0.10 0.35 15 11 N -0.91 -27.31 13.65 55.43 0.76 -26.55 15 12 Si 1.07 24.73 29.90 -169.99 -5.08 19.64 15 13 H -0.28 -6.55 7.11 56.52 0.40 -6.14 15 14 H -0.29 -6.28 7.11 56.52 0.40 -5.88 15 15 H -0.29 -6.35 7.11 56.52 0.40 -5.95 15 16 C -0.14 -2.37 6.59 -26.74 -0.18 -2.54 15 17 C 0.52 8.68 8.02 -10.86 -0.09 8.59 15 18 O -0.54 -10.68 17.35 5.56 0.10 -10.58 15 19 H 0.08 0.91 7.53 -51.93 -0.39 0.52 15 20 H 0.06 0.52 8.14 -51.93 -0.42 0.09 15 21 H 0.06 0.51 8.14 -51.93 -0.42 0.09 15 22 H 0.08 0.98 8.05 -51.93 -0.42 0.57 15 23 H 0.07 0.80 8.14 -51.93 -0.42 0.38 15 24 H 0.34 6.11 8.45 -39.29 -0.33 5.77 15 25 H -0.02 -0.53 7.95 -51.93 -0.41 -0.94 15 26 H 0.02 0.57 8.01 -51.93 -0.42 0.16 15 27 H 0.27 7.96 7.22 -40.82 -0.29 7.66 15 28 H 0.10 1.58 8.14 -51.93 -0.42 1.16 15 29 H 0.12 1.99 8.08 -51.93 -0.42 1.57 15 LS Contribution 250.84 15.07 3.78 3.78 Total: -1.00 -31.88 250.84 -6.00 -37.87 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: -3.99 Total: 0.77 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: -0.29 Total: -2.06 kcal Atomic # 7 Polarization: -48.91 SS G_CDS: -0.51 Total: -49.42 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.10 Total: -10.58 kcal Atomic # 14 Polarization: 24.73 SS G_CDS: -5.08 Total: 19.64 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -31.88 -6.00 -37.87 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306681290.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.890 kcal (2) G-P(sol) polarization free energy of solvation -31.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds