Wall clock time and date at job start Sun Mar 29 2020 21:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46820 * 124.33412 * 2 1 4 4 C 1.54479 * 105.44548 * 196.99990 * 3 2 1 5 5 H 1.08998 * 110.96669 * 92.77239 * 4 3 2 6 6 N 1.46901 * 110.97037 * 216.49296 * 4 3 2 7 7 C 1.46895 * 110.99820 * 201.91085 * 6 4 3 8 8 C 1.50706 * 109.47182 * 180.02562 * 7 6 4 9 9 H 1.08005 * 119.99758 * 0.02562 * 8 7 6 10 10 C 1.37871 * 120.00102 * 180.02562 * 8 7 6 11 11 N 1.31516 * 120.00217 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99766 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.47057 * 179.97438 * 12 10 8 14 14 H 1.48500 * 109.47389 * 300.00068 * 12 10 8 15 15 H 1.48504 * 109.47102 * 60.00417 * 12 10 8 16 16 C 1.54630 * 101.79683 * 334.63271 * 4 3 2 17 17 C 1.34411 * 124.34670 * 180.02562 * 2 1 3 18 18 O 1.21277 * 124.94859 * 359.54879 * 17 2 1 19 19 H 1.09001 * 109.47547 * 179.97438 * 1 2 3 20 20 H 1.09003 * 109.47070 * 299.93371 * 1 2 3 21 21 H 1.09000 * 109.47488 * 59.92931 * 1 2 3 22 22 H 1.09004 * 110.23600 * 78.02554 * 3 2 1 23 23 H 1.09001 * 110.28741 * 316.00901 * 3 2 1 24 24 H 1.00902 * 111.00171 * 325.86698 * 6 4 3 25 25 H 1.09001 * 109.47613 * 60.00522 * 7 6 4 26 26 H 1.09006 * 109.47521 * 300.00140 * 7 6 4 27 27 H 0.97001 * 119.99646 * 359.97438 * 11 10 8 28 28 H 1.09001 * 110.48298 * 143.45459 * 16 4 3 29 29 H 1.09004 * 110.48381 * 265.96587 * 16 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2124 0.0000 4 6 3.7010 0.7490 -0.4353 5 1 3.8274 0.8459 -1.5136 6 7 4.7446 1.4929 0.2825 7 6 6.0161 1.4576 -0.4523 8 6 7.0603 2.2288 0.3132 9 1 6.8050 2.6978 1.2520 10 6 8.3415 2.3355 -0.1848 11 7 8.6523 1.7648 -1.3281 12 14 9.6356 3.2921 0.7638 13 1 10.9210 3.2563 0.0211 14 1 9.1934 4.7009 0.9213 15 1 9.8214 2.6788 2.1035 16 6 3.6897 -0.7378 -0.0108 17 6 2.2233 -1.1098 -0.0005 18 8 1.7946 -2.2442 0.0068 19 1 -0.3634 -1.0276 -0.0005 20 1 -0.3633 0.5128 0.8906 21 1 -0.3634 0.5149 -0.8893 22 1 2.3305 1.6434 1.0005 23 1 1.8988 1.9393 -0.7101 24 1 4.4551 2.4433 0.4587 25 1 5.8801 1.9075 -1.4358 26 1 6.3406 0.4233 -0.5676 27 1 7.9802 1.2684 -1.8209 28 1 4.2325 -1.3454 -0.7349 29 1 4.1216 -0.8540 0.9833 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306681290.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:08 Heat of formation + Delta-G solvation = -60.820060 kcal Electronic energy + Delta-G solvation = -12453.733781 eV Core-core repulsion = 10182.488024 eV Total energy + Delta-G solvation = -2271.245757 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.47968 -38.20810 -36.51508 -34.75156 -32.20213 -28.92351 -27.87470 -26.52946 -24.14985 -22.13820 -20.71811 -19.01232 -17.85107 -17.63409 -16.55642 -16.01255 -15.76361 -15.50710 -15.00228 -14.74420 -14.46005 -13.94842 -13.44493 -13.33937 -13.18214 -13.01229 -12.56577 -12.37583 -12.06718 -11.89403 -11.09466 -10.74845 -10.59792 -9.81614 -9.34872 -8.67990 -6.39461 1.40411 1.57318 1.65307 1.84442 1.97299 2.58249 3.11726 3.16712 3.37898 3.52910 3.95340 4.20806 4.36987 4.46150 4.50097 4.65331 4.70423 4.79670 4.82837 4.94588 5.01253 5.45747 5.72015 5.91819 6.02296 6.37979 6.54596 6.65105 7.00974 7.42377 8.72324 Molecular weight = 198.11amu Principal moments of inertia in cm(-1) A = 0.078494 B = 0.006778 C = 0.006529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 356.629829 B = 4130.043593 C = 4287.585838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.617 5.617 3 C 0.113 3.887 4 C 0.071 3.929 5 H 0.055 0.945 6 N -0.666 5.666 7 C 0.194 3.806 8 C -0.610 4.610 9 H 0.060 0.940 10 C -0.037 4.037 11 N -0.939 5.939 12 Si 1.122 2.878 13 H -0.287 1.287 14 H -0.265 1.265 15 H -0.272 1.272 16 C -0.144 4.144 17 C 0.519 3.481 18 O -0.580 6.580 19 H 0.069 0.931 20 H 0.084 0.916 21 H 0.084 0.916 22 H 0.095 0.905 23 H 0.107 0.893 24 H 0.348 0.652 25 H -0.036 1.036 26 H -0.003 1.003 27 H 0.254 0.746 28 H 0.087 0.913 29 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.851 2.252 2.770 14.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.351 5.351 3 C -0.009 4.009 4 C -0.040 4.040 5 H 0.073 0.927 6 N -0.298 5.298 7 C 0.066 3.934 8 C -0.648 4.648 9 H 0.079 0.921 10 C -0.235 4.235 11 N -0.576 5.576 12 Si 0.943 3.057 13 H -0.213 1.213 14 H -0.190 1.190 15 H -0.197 1.197 16 C -0.185 4.185 17 C 0.307 3.693 18 O -0.461 6.461 19 H 0.088 0.912 20 H 0.102 0.898 21 H 0.103 0.897 22 H 0.113 0.887 23 H 0.125 0.875 24 H 0.167 0.833 25 H -0.019 1.019 26 H 0.015 0.985 27 H 0.064 0.936 28 H 0.106 0.894 29 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -12.461 1.646 3.154 12.959 hybrid contribution -1.605 -0.284 -1.020 1.923 sum -14.067 1.362 2.134 14.293 Atomic orbital electron populations 1.21797 0.76188 1.03585 1.03739 1.48287 1.07725 1.06862 1.72198 1.22313 0.87874 0.86767 1.03991 1.22384 0.91742 0.93333 0.96537 0.92685 1.60471 1.02046 1.19699 1.47601 1.19414 0.87993 0.94841 0.91144 1.22376 0.97465 1.35910 1.09086 0.92126 1.27405 1.01508 0.97643 0.96909 1.70935 1.37536 1.33796 1.15353 0.82865 0.72973 0.75561 0.74314 1.21297 1.19031 1.19710 1.22385 0.93350 0.97743 1.05053 1.21037 0.89782 0.84242 0.74218 1.90653 1.79397 1.22760 1.53302 0.91237 0.89758 0.89740 0.88731 0.87480 0.83282 1.01853 0.98451 0.93628 0.89439 0.87465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.55 11.14 127.77 1.42 2.97 15 2 N -0.62 -15.31 3.33 -842.76 -2.81 -18.12 15 3 C 0.11 2.51 6.83 86.82 0.59 3.11 15 4 C 0.07 2.20 3.45 45.97 0.16 2.36 15 5 H 0.06 1.78 7.87 -2.39 -0.02 1.76 15 6 N -0.67 -25.32 6.29 -490.11 -3.09 -28.40 15 7 C 0.19 9.64 4.63 85.56 0.40 10.04 15 8 C -0.61 -33.43 9.32 25.60 0.24 -33.19 15 9 H 0.06 3.22 7.81 -2.91 -0.02 3.20 15 10 C -0.04 -2.08 5.46 84.65 0.46 -1.62 15 11 N -0.94 -57.04 13.65 21.45 0.29 -56.75 15 12 Si 1.12 48.85 29.90 68.60 2.05 50.90 15 13 H -0.29 -12.65 7.11 99.48 0.71 -11.95 15 14 H -0.27 -10.53 7.11 99.48 0.71 -9.82 15 15 H -0.27 -11.10 7.11 99.48 0.71 -10.39 15 16 C -0.14 -4.76 6.59 30.59 0.20 -4.56 15 17 C 0.52 16.89 8.02 87.90 0.71 17.59 15 18 O -0.58 -22.84 17.35 -3.02 -0.05 -22.89 15 19 H 0.07 1.43 7.53 -2.39 -0.02 1.41 15 20 H 0.08 1.12 8.14 -2.39 -0.02 1.10 15 21 H 0.08 1.11 8.14 -2.39 -0.02 1.09 15 22 H 0.09 1.93 8.05 -2.39 -0.02 1.91 15 23 H 0.11 1.80 8.14 -2.39 -0.02 1.78 15 24 H 0.35 11.92 8.45 -89.69 -0.76 11.16 15 25 H -0.04 -1.88 7.95 -2.39 -0.02 -1.90 15 26 H 0.00 -0.14 8.01 -2.38 -0.02 -0.16 15 27 H 0.25 15.62 7.22 -92.71 -0.67 14.95 15 28 H 0.09 2.98 8.14 -2.39 -0.02 2.96 15 29 H 0.11 3.71 8.08 -2.38 -0.02 3.69 15 Total: -1.00 -68.81 250.84 1.06 -67.76 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: 0.48 Total: 10.80 kcal Atomic # 6 Polarization: -7.48 SS G_CDS: 4.18 Total: -3.30 kcal Atomic # 7 Polarization: -97.67 SS G_CDS: -5.60 Total: -103.27 kcal Atomic # 8 Polarization: -22.84 SS G_CDS: -0.05 Total: -22.89 kcal Atomic # 14 Polarization: 48.85 SS G_CDS: 2.05 Total: 50.90 kcal Total: -68.81 1.06 -67.76 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306681290.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.938 kcal (2) G-P(sol) polarization free energy of solvation -68.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds