Wall clock time and date at job start Sun Mar 29 2020 21:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.75419 * 2 1 4 4 C 1.53467 * 109.85136 * 239.13339 * 2 1 3 5 5 N 1.45645 * 110.73702 * 287.31410 * 4 2 1 6 6 C 1.33381 * 124.59575 * 337.98467 * 5 4 2 7 7 O 1.21274 * 118.49381 * 184.29243 * 6 5 4 8 8 C 1.50443 * 123.01807 * 4.31304 * 6 5 4 9 9 N 1.47045 * 108.89018 * 347.29497 * 8 6 5 10 10 C 1.36936 * 121.35426 * 222.71101 * 9 8 6 11 11 H 1.08003 * 119.99996 * 153.34734 * 10 9 8 12 12 C 1.38810 * 120.00304 * 333.07711 * 10 9 8 13 13 N 1.31624 * 119.99441 * 348.93824 * 12 10 9 14 14 Si 1.86802 * 120.00376 * 168.93232 * 12 10 9 15 15 H 1.48500 * 109.46784 * 90.00215 * 14 12 10 16 16 H 1.48494 * 109.47025 * 209.99980 * 14 12 10 17 17 H 1.48499 * 109.47186 * 330.00102 * 14 12 10 18 18 H 1.08998 * 109.47280 * 299.37107 * 1 2 3 19 19 H 1.09008 * 109.46797 * 59.37050 * 1 2 3 20 20 H 1.09000 * 109.47347 * 179.36697 * 1 2 3 21 21 H 1.09001 * 109.47638 * 180.63329 * 3 2 1 22 22 H 1.09000 * 109.46797 * 300.63152 * 3 2 1 23 23 H 1.09003 * 109.47236 * 60.62983 * 3 2 1 24 24 H 1.09004 * 109.33184 * 166.93582 * 4 2 1 25 25 H 1.08997 * 109.10380 * 47.55744 * 4 2 1 26 26 H 0.97000 * 117.70540 * 158.00092 * 5 4 2 27 27 H 1.08996 * 109.56567 * 227.47313 * 8 6 5 28 28 H 1.08997 * 109.66584 * 107.17408 * 8 6 5 29 29 H 0.97001 * 119.99347 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0471 1.4399 0.0000 4 6 2.0511 -0.7406 -1.2390 5 7 1.8449 -2.1762 -1.1064 6 6 1.6832 -2.8141 0.0538 7 8 1.5980 -4.0238 0.0420 8 6 1.6010 -2.1018 1.3764 9 7 2.0268 -0.7064 1.1929 10 6 2.8474 -0.0871 2.0974 11 1 3.4850 0.7250 1.7805 12 6 2.8556 -0.4992 3.4229 13 7 1.9306 -1.3272 3.8603 14 14 4.1795 0.1211 4.5858 15 1 3.7188 1.3735 5.2373 16 1 4.4481 -0.9068 5.6233 17 1 5.4238 0.3896 3.8211 18 1 -0.3634 0.5040 0.8955 19 1 -0.3633 0.5236 -0.8844 20 1 -0.3634 -1.0276 -0.0114 21 1 3.1370 1.4347 -0.0114 22 1 1.6770 1.9588 -0.8843 23 1 1.6955 1.9523 0.8956 24 1 3.1160 -0.5406 -1.3576 25 1 1.5185 -0.3814 -2.1196 26 1 1.8240 -2.7058 -1.9188 27 1 2.2565 -2.5919 2.0962 28 1 0.5746 -2.1251 1.7424 29 1 1.9366 -1.6154 4.7865 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307192302.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:44 Heat of formation + Delta-G solvation = -15.616057 kcal Electronic energy + Delta-G solvation = -13480.933031 eV Core-core repulsion = 11211.647467 eV Total energy + Delta-G solvation = -2269.285564 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.43578 -36.80216 -33.86059 -32.28505 -30.22329 -27.56356 -25.74142 -25.59418 -23.10011 -20.53425 -17.82515 -16.72030 -16.26158 -15.50845 -14.68054 -14.51867 -13.99614 -13.44348 -13.21458 -12.71761 -12.26418 -11.76289 -11.44508 -11.29193 -11.18980 -10.79967 -10.77033 -10.52781 -10.33224 -9.96601 -9.89508 -9.04886 -8.63295 -8.41422 -6.84631 -5.88105 -3.33705 3.33581 3.41081 3.42445 3.51214 4.05900 4.38976 5.08117 5.28637 5.47215 5.58224 5.75924 5.86388 5.99774 6.15507 6.28418 6.44403 6.50870 6.56023 6.88701 6.92771 7.02152 7.27951 7.48004 7.71449 8.09047 8.26074 8.93158 9.12739 9.68817 10.24802 11.21659 Molecular weight = 198.11amu Principal moments of inertia in cm(-1) A = 0.036399 B = 0.015131 C = 0.012334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.057897 B = 1850.073820 C = 2269.608155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.172 3.828 3 C -0.127 4.127 4 C 0.108 3.892 5 N -0.720 5.720 6 C 0.501 3.499 7 O -0.584 6.584 8 C 0.167 3.833 9 N -0.584 5.584 10 C -0.254 4.254 11 H 0.076 0.924 12 C 0.005 3.995 13 N -0.907 5.907 14 Si 0.908 3.092 15 H -0.286 1.286 16 H -0.289 1.289 17 H -0.279 1.279 18 H 0.059 0.941 19 H 0.043 0.957 20 H 0.046 0.954 21 H 0.058 0.942 22 H 0.044 0.956 23 H 0.067 0.933 24 H 0.057 0.943 25 H 0.061 0.939 26 H 0.380 0.620 27 H 0.114 0.886 28 H 0.063 0.937 29 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.582 4.433 -7.933 9.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.083 3.917 3 C -0.185 4.185 4 C -0.019 4.019 5 N -0.370 5.370 6 C 0.289 3.711 7 O -0.464 6.464 8 C 0.039 3.961 9 N -0.308 5.308 10 C -0.383 4.383 11 H 0.094 0.906 12 C -0.194 4.194 13 N -0.551 5.551 14 Si 0.737 3.263 15 H -0.213 1.213 16 H -0.215 1.215 17 H -0.204 1.204 18 H 0.079 0.921 19 H 0.062 0.938 20 H 0.065 0.935 21 H 0.077 0.923 22 H 0.063 0.937 23 H 0.086 0.914 24 H 0.075 0.925 25 H 0.079 0.921 26 H 0.213 0.787 27 H 0.131 0.869 28 H 0.081 0.919 29 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.613 3.895 -7.504 8.477 hybrid contribution 0.557 0.121 0.315 0.652 sum -0.056 4.016 -7.189 8.235 Atomic orbital electron populations 1.22217 0.97186 1.01060 1.00781 1.20314 0.92101 0.92067 0.87247 1.21738 1.01194 0.94610 1.00988 1.22005 1.00272 0.80275 0.99335 1.45431 1.74124 1.08993 1.08487 1.22120 0.73145 0.87876 0.87911 1.90629 1.52620 1.15186 1.87984 1.20945 1.01659 0.84367 0.89152 1.44290 1.55555 1.07144 1.23816 1.19151 1.14740 1.16760 0.87694 0.90596 1.25159 0.97818 0.99642 0.96814 1.69932 1.33027 1.36402 1.15736 0.86213 0.81372 0.78022 0.80654 1.21291 1.21499 1.20415 0.92148 0.93798 0.93535 0.92324 0.93744 0.91389 0.92484 0.92079 0.78725 0.86853 0.91932 0.93226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.72 8.34 37.15 0.31 -2.41 15 2 C 0.17 3.23 1.06 -131.16 -0.14 3.09 15 3 C -0.13 -2.13 7.32 37.16 0.27 -1.86 15 4 C 0.11 1.77 6.08 -4.26 -0.03 1.74 15 5 N -0.72 -13.24 5.32 -61.07 -0.32 -13.56 15 6 C 0.50 11.38 7.29 -11.73 -0.09 11.30 15 7 O -0.58 -14.78 17.80 5.56 0.10 -14.68 15 8 C 0.17 4.12 4.29 -5.02 -0.02 4.09 15 9 N -0.58 -13.79 2.79 -158.65 -0.44 -14.23 15 10 C -0.25 -6.51 8.73 -15.06 -0.13 -6.64 15 11 H 0.08 1.86 6.25 -52.48 -0.33 1.53 15 12 C 0.00 0.12 5.09 -17.43 -0.09 0.03 15 13 N -0.91 -25.56 11.03 55.49 0.61 -24.95 15 14 Si 0.91 21.07 29.57 -169.99 -5.03 16.04 15 15 H -0.29 -6.61 7.11 56.52 0.40 -6.21 15 16 H -0.29 -6.85 7.11 56.52 0.40 -6.45 15 17 H -0.28 -6.34 7.11 56.52 0.40 -5.94 15 18 H 0.06 1.15 8.14 -51.93 -0.42 0.73 15 19 H 0.04 0.63 8.14 -51.92 -0.42 0.21 15 20 H 0.05 0.87 6.81 -51.93 -0.35 0.52 15 21 H 0.06 0.99 7.19 -51.93 -0.37 0.62 15 22 H 0.04 0.59 8.14 -51.93 -0.42 0.17 15 23 H 0.07 1.23 7.87 -51.93 -0.41 0.83 15 24 H 0.06 0.93 8.08 -51.93 -0.42 0.51 15 25 H 0.06 0.80 8.09 -51.93 -0.42 0.38 15 26 H 0.38 6.09 8.80 -40.82 -0.36 5.73 15 27 H 0.11 3.15 6.51 -51.93 -0.34 2.81 15 28 H 0.06 1.63 7.83 -51.93 -0.41 1.22 15 29 H 0.26 7.08 8.31 -40.82 -0.34 6.74 15 LS Contribution 236.19 15.07 3.56 3.56 Total: -1.00 -29.82 236.19 -5.24 -35.06 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -3.81 Total: 3.41 kcal Atomic # 6 Polarization: 9.26 SS G_CDS: 0.09 Total: 9.35 kcal Atomic # 7 Polarization: -52.59 SS G_CDS: -0.16 Total: -52.74 kcal Atomic # 8 Polarization: -14.78 SS G_CDS: 0.10 Total: -14.68 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.03 Total: 16.04 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -29.82 -5.24 -35.06 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307192302.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.447 kcal (2) G-P(sol) polarization free energy of solvation -29.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds