Wall clock time and date at job start Sun Mar 29 2020 21:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.99326 * 2 1 4 4 C 1.54330 * 109.99016 * 238.96312 * 2 1 3 5 5 H 1.08991 * 110.67363 * 337.03991 * 4 2 1 6 6 N 1.46900 * 110.85258 * 100.20182 * 4 2 1 7 7 C 1.46900 * 111.00067 * 175.14064 * 6 4 2 8 8 C 1.46903 * 110.99577 * 299.09592 * 6 4 2 9 9 C 1.55161 * 103.01702 * 218.66495 * 4 2 1 10 10 C 1.54907 * 101.58311 * 35.30567 * 9 4 2 11 11 N 1.47017 * 109.87979 * 121.09460 * 2 1 3 12 12 C 1.36938 * 125.64871 * 298.39305 * 11 2 1 13 13 H 1.07999 * 119.99969 * 345.90520 * 12 11 2 14 14 C 1.38814 * 120.00308 * 165.62480 * 12 11 2 15 15 N 1.31627 * 119.99452 * 351.91863 * 14 12 11 16 16 Si 1.86798 * 120.00279 * 171.91006 * 14 12 11 17 17 H 1.48498 * 109.46738 * 94.84796 * 16 14 12 18 18 H 1.48502 * 109.47036 * 214.84632 * 16 14 12 19 19 H 1.48503 * 109.46971 * 334.84916 * 16 14 12 20 20 H 1.08993 * 109.47580 * 300.36139 * 1 2 3 21 21 H 1.09003 * 109.46703 * 60.36261 * 1 2 3 22 22 H 1.08997 * 109.46915 * 180.35545 * 1 2 3 23 23 H 1.08996 * 109.47052 * 59.99866 * 7 6 4 24 24 H 1.08999 * 109.46637 * 179.97438 * 7 6 4 25 25 H 1.08997 * 109.47212 * 299.99966 * 7 6 4 26 26 H 1.08998 * 109.47473 * 60.00019 * 8 6 4 27 27 H 1.08998 * 109.47001 * 179.97438 * 8 6 4 28 28 H 1.09004 * 109.46778 * 299.99908 * 8 6 4 29 29 H 1.09007 * 111.00345 * 277.23403 * 9 4 2 30 30 H 1.08999 * 111.03952 * 153.40061 * 9 4 2 31 31 H 1.09002 * 110.36738 * 204.15175 * 10 9 4 32 32 H 1.09007 * 110.36417 * 81.82759 * 10 9 4 33 33 H 0.96996 * 119.99218 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0576 -0.7478 -1.2427 5 1 1.3068 -1.4405 -1.6225 6 7 2.4649 0.1994 -2.2891 7 6 3.0739 -0.5028 -3.4267 8 6 1.3289 1.0223 -2.7253 9 6 3.2864 -1.5183 -0.6914 10 6 2.8100 -1.8824 0.7369 11 7 2.0300 -0.7140 1.1839 12 6 1.8038 -0.3563 2.4862 13 1 1.4159 0.6248 2.7172 14 6 2.0675 -1.2568 3.5092 15 7 2.3818 -2.5028 3.2243 16 14 1.9765 -0.7002 5.2901 17 1 0.6317 -1.0113 5.8377 18 1 3.0109 -1.4107 6.0842 19 1 2.2146 0.7638 5.3639 20 1 -0.3634 0.5194 0.8866 21 1 -0.3633 0.5082 -0.8933 22 1 -0.3633 -1.0276 0.0064 23 1 2.3532 -1.2024 -3.8498 24 1 3.3657 0.2219 -4.1868 25 1 3.9542 -1.0487 -3.0876 26 1 0.9407 1.5851 -1.8764 27 1 1.6582 1.7149 -3.4999 28 1 0.5449 0.3778 -3.1230 29 1 4.1670 -0.8767 -0.6578 30 1 3.4815 -2.4155 -1.2788 31 1 3.6656 -2.0411 1.3933 32 1 2.1801 -2.7718 0.7115 33 1 2.5664 -3.1319 3.9392 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307292977.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:10 Heat of formation + Delta-G solvation = 8.951396 kcal Electronic energy + Delta-G solvation = -13483.577621 eV Core-core repulsion = 11351.190476 eV Total energy + Delta-G solvation = -2132.387145 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.15803 -36.92269 -34.07558 -32.29083 -30.53677 -28.21247 -26.97690 -25.84500 -23.47867 -21.75183 -20.70502 -18.67607 -17.40642 -16.44686 -16.06417 -15.54890 -15.18894 -14.90508 -14.32807 -14.10312 -13.69869 -13.42528 -13.07023 -12.93322 -12.87395 -12.63844 -12.42353 -12.26577 -11.98683 -11.80088 -11.61029 -11.50930 -11.28919 -10.66407 -9.23045 -8.80319 -7.85908 -5.21210 1.46004 1.47447 1.57257 2.50099 3.02576 3.35269 3.68857 3.82480 4.07168 4.28904 4.36670 4.53614 4.60619 4.66150 4.70231 4.75480 4.78845 4.83216 5.01035 5.03664 5.10441 5.14441 5.28869 5.46998 5.48664 5.61715 5.72789 6.18164 6.22735 6.27133 7.11089 7.79751 8.48220 9.26778 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.059298 B = 0.010157 C = 0.009225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.080524 B = 2756.164825 C = 3034.410420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.159 3.841 3 H 0.037 0.963 4 C 0.090 3.910 5 H 0.044 0.956 6 N -0.550 5.550 7 C 0.026 3.974 8 C 0.022 3.978 9 C -0.121 4.121 10 C 0.181 3.819 11 N -0.616 5.616 12 C -0.234 4.234 13 H 0.075 0.925 14 C -0.065 4.065 15 N -0.949 5.949 16 Si 0.975 3.025 17 H -0.287 1.287 18 H -0.293 1.293 19 H -0.269 1.269 20 H 0.038 0.962 21 H 0.073 0.927 22 H 0.032 0.968 23 H 0.027 0.973 24 H 0.085 0.915 25 H 0.067 0.933 26 H 0.064 0.936 27 H 0.085 0.915 28 H 0.029 0.971 29 H 0.068 0.932 30 H 0.080 0.920 31 H 0.028 0.972 32 H -0.002 1.002 33 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.715 4.422 -12.002 12.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.053 3.947 3 H 0.054 0.946 4 C -0.019 4.019 5 H 0.062 0.938 6 N -0.275 5.275 7 C -0.122 4.122 8 C -0.126 4.126 9 C -0.159 4.159 10 C 0.056 3.944 11 N -0.342 5.342 12 C -0.363 4.363 13 H 0.093 0.907 14 C -0.258 4.258 15 N -0.597 5.597 16 Si 0.804 3.196 17 H -0.214 1.214 18 H -0.219 1.219 19 H -0.194 1.194 20 H 0.057 0.943 21 H 0.092 0.908 22 H 0.052 0.948 23 H 0.046 0.954 24 H 0.103 0.897 25 H 0.086 0.914 26 H 0.082 0.918 27 H 0.104 0.896 28 H 0.047 0.953 29 H 0.087 0.913 30 H 0.099 0.901 31 H 0.047 0.953 32 H 0.016 0.984 33 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -0.338 4.668 -11.622 12.529 hybrid contribution -0.735 -0.703 0.969 1.405 sum -1.073 3.966 -10.653 11.417 Atomic orbital electron populations 1.22209 0.97237 1.00303 1.00901 1.21032 0.92577 0.94929 0.86193 0.94554 1.22481 0.95832 0.92437 0.91189 0.93821 1.61994 1.30653 1.23768 1.11037 1.22418 0.99111 0.98299 0.92355 1.22508 0.91789 0.97293 1.01035 1.22893 0.97399 0.99453 0.96205 1.21108 0.93367 0.88633 0.91332 1.44776 1.59078 1.29321 1.00984 1.19294 1.37493 0.97281 0.82269 0.90731 1.25688 1.02719 0.95382 1.02035 1.70152 1.54463 1.03577 1.31537 0.85113 0.76960 0.77751 0.79819 1.21369 1.21943 1.19393 0.94253 0.90780 0.94843 0.95420 0.89673 0.91430 0.91767 0.89634 0.95267 0.91281 0.90127 0.95308 0.98381 0.94368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.71 8.92 71.98 0.64 -5.07 16 2 C 0.16 6.80 2.65 45.35 0.12 6.92 16 3 H 0.04 1.61 7.61 -2.39 -0.02 1.59 16 4 C 0.09 3.23 2.19 46.11 0.10 3.33 16 5 H 0.04 1.58 7.85 -2.39 -0.02 1.56 16 6 N -0.55 -16.23 4.85 -916.25 -4.44 -20.67 16 7 C 0.03 0.60 9.36 127.69 1.19 1.79 16 8 C 0.02 0.53 8.53 127.69 1.09 1.62 16 9 C -0.12 -4.68 5.45 31.99 0.17 -4.51 16 10 C 0.18 9.26 5.37 86.85 0.47 9.72 16 11 N -0.62 -32.73 3.12 -668.25 -2.09 -34.82 16 12 C -0.23 -13.47 9.82 84.03 0.83 -12.64 16 13 H 0.07 4.16 7.84 -2.91 -0.02 4.13 16 14 C -0.06 -3.78 5.40 84.86 0.46 -3.32 16 15 N -0.95 -58.26 10.80 21.65 0.23 -58.03 16 16 Si 0.98 46.72 29.56 68.60 2.03 48.74 16 17 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 18 H -0.29 -14.03 7.11 99.48 0.71 -13.33 16 19 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 20 H 0.04 1.60 8.02 -2.39 -0.02 1.58 16 21 H 0.07 2.29 6.23 -2.39 -0.01 2.27 16 22 H 0.03 1.36 8.14 -2.39 -0.02 1.35 16 23 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 24 H 0.08 1.59 8.12 -2.39 -0.02 1.57 16 25 H 0.07 1.59 7.15 -2.39 -0.02 1.57 16 26 H 0.06 1.69 5.84 -2.39 -0.01 1.68 16 27 H 0.09 1.68 8.12 -2.39 -0.02 1.66 16 28 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.07 2.69 8.14 -2.38 -0.02 2.67 16 30 H 0.08 2.69 8.08 -2.39 -0.02 2.67 16 31 H 0.03 1.63 7.17 -2.39 -0.02 1.62 16 32 H 0.00 -0.10 7.99 -2.38 -0.02 -0.12 16 33 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 Total: -1.00 -65.50 258.25 1.86 -63.64 By element: Atomic # 1 Polarization: 2.24 SS G_CDS: 1.05 Total: 3.29 kcal Atomic # 6 Polarization: -7.23 SS G_CDS: 5.07 Total: -2.16 kcal Atomic # 7 Polarization: -107.23 SS G_CDS: -6.29 Total: -113.52 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 2.03 Total: 48.74 kcal Total: -65.50 1.86 -63.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307292977.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.596 kcal (2) G-P(sol) polarization free energy of solvation -65.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds