Wall clock time and date at job start Sun Mar 29 2020 21:54:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.49694 * 2 1 4 4 C 1.52789 * 109.58305 * 240.08104 * 2 1 3 5 5 H 1.08993 * 109.46155 * 306.11160 * 4 2 1 6 6 C 1.53001 * 109.55514 * 66.54633 * 4 2 1 7 7 N 1.47081 * 108.76131 * 186.35545 * 4 2 1 8 8 C 1.36942 * 120.88200 * 231.12292 * 7 4 2 9 9 H 1.07999 * 119.99872 * 27.99662 * 8 7 4 10 10 C 1.38806 * 120.00039 * 208.28121 * 8 7 4 11 11 N 1.31624 * 120.00246 * 13.73935 * 10 8 7 12 12 Si 1.86800 * 120.00293 * 193.73798 * 10 8 7 13 13 H 1.48499 * 109.47038 * 89.99500 * 12 10 8 14 14 H 1.48496 * 109.47506 * 209.99740 * 12 10 8 15 15 H 1.48503 * 109.46885 * 330.00302 * 12 10 8 16 16 C 1.47081 * 118.24028 * 50.85648 * 7 4 2 17 17 C 1.53242 * 108.51603 * 309.08335 * 16 7 4 18 18 N 1.46900 * 109.33957 * 53.83423 * 17 16 7 19 19 C 1.46898 * 110.99862 * 172.74519 * 18 17 16 20 20 H 1.09004 * 109.46392 * 299.94566 * 1 2 3 21 21 H 1.08998 * 109.46971 * 59.94238 * 1 2 3 22 22 H 1.08996 * 109.46902 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47020 * 179.28256 * 6 4 2 24 24 H 1.08995 * 109.46748 * 299.27660 * 6 4 2 25 25 H 1.08994 * 109.47217 * 59.28125 * 6 4 2 26 26 H 0.96997 * 120.00081 * 180.02562 * 11 10 8 27 27 H 1.09000 * 109.62997 * 68.79113 * 16 7 4 28 28 H 1.09000 * 109.63108 * 189.37675 * 16 7 4 29 29 H 1.09007 * 109.48843 * 173.78624 * 17 16 7 30 30 H 1.08996 * 109.49508 * 293.86891 * 17 16 7 31 31 H 1.08999 * 109.47274 * 56.04532 * 19 18 17 32 32 H 1.09004 * 109.46992 * 176.04001 * 19 18 17 33 33 H 1.08997 * 109.47440 * 296.03767 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0421 -0.7180 -1.2477 5 1 1.5932 -1.7095 -1.3061 6 6 1.6732 0.0918 -2.4923 7 7 3.5047 -0.8425 -1.1550 8 6 4.3111 -0.4418 -2.1868 9 1 3.9861 0.3444 -2.8520 10 6 5.5434 -1.0503 -2.3811 11 7 5.8265 -2.1765 -1.7613 12 14 6.8003 -0.2710 -3.5223 13 1 7.6607 0.6602 -2.7490 14 1 7.6418 -1.3325 -4.1308 15 1 6.0977 0.4791 -4.5941 16 6 4.0787 -1.4033 0.0776 17 6 3.4867 -0.6528 1.2754 18 7 2.0203 -0.6937 1.1986 19 6 1.4137 -0.1359 2.4146 20 1 -0.3632 0.5130 0.8905 21 1 -0.3633 0.5147 -0.8895 22 1 -0.3633 -1.0276 -0.0005 23 1 2.0502 -0.4151 -3.3805 24 1 0.5890 0.1825 -2.5584 25 1 2.1174 1.0848 -2.4245 26 1 6.6878 -2.6014 -1.8969 27 1 3.8293 -2.4619 0.1491 28 1 5.1616 -1.2793 0.0668 29 1 3.8157 -1.1268 2.2003 30 1 3.8232 0.3837 1.2577 31 1 1.7835 0.8771 2.5734 32 1 0.3296 -0.1134 2.3025 33 1 1.6775 -0.7574 3.2703 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307753068.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:28 Heat of formation + Delta-G solvation = 10.575050 kcal Electronic energy + Delta-G solvation = -13696.235200 eV Core-core repulsion = 11563.918462 eV Total energy + Delta-G solvation = -2132.316738 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.18144 -36.41270 -34.52324 -32.96142 -29.63534 -29.10171 -26.69690 -26.16848 -22.70335 -22.56315 -20.58849 -18.30620 -17.19927 -16.51554 -16.04478 -15.79028 -15.31669 -14.90123 -14.74184 -13.94142 -13.45403 -13.37206 -13.14686 -12.86841 -12.73062 -12.47515 -12.37772 -12.22081 -12.06572 -11.94919 -11.65601 -11.40992 -11.10299 -10.56697 -9.22384 -8.62168 -7.83978 -5.30558 1.45989 1.46893 1.55890 2.51166 3.06261 3.31586 3.61436 4.04887 4.25571 4.32207 4.45372 4.51667 4.64312 4.68056 4.70672 4.73213 4.84407 4.92744 4.94911 5.09199 5.15203 5.26717 5.34333 5.47571 5.54043 5.68209 5.68838 6.23590 6.34839 6.42039 7.16407 7.87743 8.43020 9.23340 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.048071 B = 0.012112 C = 0.010424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.337819 B = 2311.256994 C = 2685.466283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.075 3.925 3 H 0.022 0.978 4 C 0.168 3.832 5 H 0.013 0.987 6 C -0.129 4.129 7 N -0.611 5.611 8 C -0.253 4.253 9 H 0.075 0.925 10 C -0.056 4.056 11 N -0.940 5.940 12 Si 0.967 3.033 13 H -0.287 1.287 14 H -0.296 1.296 15 H -0.267 1.267 16 C 0.185 3.815 17 C 0.049 3.951 18 N -0.550 5.550 19 C 0.021 3.979 20 H 0.073 0.927 21 H 0.075 0.925 22 H 0.059 0.941 23 H 0.042 0.958 24 H 0.081 0.919 25 H 0.047 0.953 26 H 0.248 0.752 27 H -0.005 1.005 28 H 0.057 0.943 29 H 0.079 0.921 30 H 0.016 0.984 31 H 0.019 0.981 32 H 0.089 0.911 33 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.250 5.563 4.878 11.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.034 4.034 3 H 0.040 0.960 4 C 0.062 3.938 5 H 0.030 0.970 6 C -0.186 4.186 7 N -0.335 5.335 8 C -0.383 4.383 9 H 0.093 0.907 10 C -0.251 4.251 11 N -0.587 5.587 12 Si 0.795 3.205 13 H -0.214 1.214 14 H -0.223 1.223 15 H -0.192 1.192 16 C 0.059 3.941 17 C -0.081 4.081 18 N -0.275 5.275 19 C -0.126 4.126 20 H 0.091 0.909 21 H 0.093 0.907 22 H 0.078 0.922 23 H 0.061 0.939 24 H 0.100 0.900 25 H 0.066 0.934 26 H 0.057 0.943 27 H 0.013 0.987 28 H 0.075 0.925 29 H 0.097 0.903 30 H 0.034 0.966 31 H 0.038 0.962 32 H 0.107 0.893 33 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -9.261 4.991 4.807 11.566 hybrid contribution 1.459 0.723 -0.477 1.697 sum -7.802 5.714 4.330 10.595 Atomic orbital electron populations 1.21911 0.92013 1.02633 1.02904 1.22018 0.96506 0.94306 0.90607 0.96024 1.20654 0.83774 0.95625 0.93796 0.96979 1.21772 1.00950 0.99169 0.96758 1.44501 1.00966 1.73672 1.14353 1.19561 0.98664 1.12705 1.07376 0.90725 1.25861 1.01891 0.96135 1.01173 1.70182 1.22642 1.18017 1.47872 0.85269 0.79132 0.77234 0.78865 1.21383 1.22273 1.19152 1.20613 0.96887 0.92866 0.83769 1.22601 0.87909 0.98077 0.99481 1.61939 1.06345 1.55985 1.03212 1.22531 1.00964 0.97271 0.91848 0.90856 0.90651 0.92161 0.93882 0.89996 0.93427 0.94280 0.98655 0.92459 0.90274 0.96616 0.96213 0.89273 0.90953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.60 8.53 71.98 0.61 -2.99 16 2 C 0.08 2.71 2.04 44.85 0.09 2.80 16 3 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 4 C 0.17 7.26 3.09 44.81 0.14 7.40 16 5 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 6 C -0.13 -4.82 7.70 71.98 0.55 -4.27 16 7 N -0.61 -32.13 3.04 -675.13 -2.05 -34.18 16 8 C -0.25 -14.14 8.68 84.03 0.73 -13.41 16 9 H 0.08 4.01 6.20 -2.91 -0.02 3.99 16 10 C -0.06 -3.20 5.00 84.86 0.42 -2.78 16 11 N -0.94 -57.26 11.09 21.65 0.24 -57.02 16 12 Si 0.97 45.79 29.58 68.60 2.03 47.82 16 13 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16 14 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 15 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 16 C 0.18 9.56 5.39 86.35 0.47 10.02 16 17 C 0.05 2.01 5.62 86.38 0.49 2.50 16 18 N -0.55 -20.08 4.73 -896.96 -4.24 -24.33 16 19 C 0.02 0.58 9.27 127.69 1.18 1.76 16 20 H 0.07 1.60 6.14 -2.39 -0.01 1.59 16 21 H 0.07 1.74 6.64 -2.39 -0.02 1.72 16 22 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 23 H 0.04 1.76 7.53 -2.39 -0.02 1.74 16 24 H 0.08 2.38 6.66 -2.39 -0.02 2.37 16 25 H 0.05 1.80 7.59 -2.39 -0.02 1.78 16 26 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 27 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 28 H 0.06 3.28 6.16 -2.39 -0.01 3.27 16 29 H 0.08 2.91 8.11 -2.38 -0.02 2.89 16 30 H 0.02 0.66 8.14 -2.39 -0.02 0.65 16 31 H 0.02 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.09 2.03 5.72 -2.38 -0.01 2.01 16 33 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -64.93 251.14 1.73 -63.21 By element: Atomic # 1 Polarization: 2.39 SS G_CDS: 1.07 Total: 3.46 kcal Atomic # 6 Polarization: -3.65 SS G_CDS: 4.69 Total: 1.04 kcal Atomic # 7 Polarization: -109.47 SS G_CDS: -6.05 Total: -115.52 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.82 kcal Total: -64.93 1.73 -63.21 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307753068.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.783 kcal (2) G-P(sol) polarization free energy of solvation -64.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds