Wall clock time and date at job start Sun Mar 29 2020 22:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31441 * 1 3 3 Si 1.86805 * 119.99735 * 2 1 4 4 H 1.48500 * 109.47088 * 269.73216 * 3 2 1 5 5 H 1.48505 * 109.47152 * 29.72693 * 3 2 1 6 6 H 1.48494 * 109.47142 * 149.72693 * 3 2 1 7 7 C 1.38755 * 120.00431 * 179.72999 * 2 1 3 8 8 H 1.08000 * 119.99611 * 179.97438 * 7 2 1 9 9 O 1.34916 * 119.99909 * 359.97438 * 7 2 1 10 10 C 1.34313 * 116.99956 * 180.02562 * 9 7 2 11 11 O 1.21211 * 119.99871 * 0.02562 * 10 9 7 12 12 C 1.50693 * 119.99793 * 180.02562 * 10 9 7 13 13 C 1.50698 * 115.55139 * 34.33187 * 12 10 9 14 14 N 1.34771 * 120.00396 * 325.58119 * 13 12 10 15 15 O 1.21282 * 119.99998 * 145.58091 * 13 12 10 16 16 C 1.52998 * 117.50034 * 248.62104 * 12 10 9 17 17 C 1.53001 * 117.49707 * 179.97438 * 12 10 9 18 18 H 0.97000 * 120.00093 * 0.26909 * 1 2 3 19 19 H 0.97006 * 119.99724 * 0.02562 * 14 13 12 20 20 H 0.96994 * 120.00632 * 180.02562 * 14 13 12 21 21 H 1.09004 * 117.50057 * 359.97438 * 16 12 10 22 22 H 1.08999 * 117.49970 * 145.02405 * 16 12 10 23 23 H 1.08999 * 117.50415 * 214.97778 * 17 12 10 24 24 H 1.08994 * 117.50051 * 0.02562 * 17 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6178 0.0000 4 1 2.5015 2.0432 -1.4001 5 1 1.4429 2.6544 0.6943 6 1 3.5430 1.4420 0.7058 7 6 2.0083 -1.2016 0.0057 8 1 3.0883 -1.2014 0.0052 9 8 1.3338 -2.3700 0.0117 10 6 2.0654 -3.4964 0.0175 11 8 3.2758 -3.4329 0.0176 12 6 1.3813 -4.8391 0.0238 13 6 0.0861 -4.9123 -0.7431 14 7 -0.7360 -3.8451 -0.7810 15 8 -0.2165 -5.9318 -1.3262 16 6 1.5009 -5.6869 1.2918 17 6 2.2699 -6.0846 0.0297 18 1 -0.4850 0.8400 -0.0039 19 1 -0.4938 -3.0295 -0.3149 20 1 -1.5698 -3.8923 -1.2743 21 1 2.0748 -5.2737 2.1213 22 1 0.6426 -6.2978 1.5716 23 1 1.9173 -6.9571 -0.5204 24 1 3.3492 -5.9328 0.0294 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308082763.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:34 Heat of formation + Delta-G solvation = -119.384809 kcal Electronic energy + Delta-G solvation = -12761.270230 eV Core-core repulsion = 10253.933158 eV Total energy + Delta-G solvation = -2507.337072 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 199.068 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.76634 -40.24603 -37.98414 -36.46026 -34.63110 -34.22268 -28.23636 -26.27249 -23.56804 -23.38194 -20.77089 -20.11459 -19.14627 -18.08190 -17.34779 -16.74599 -16.34062 -16.22165 -15.50809 -15.45636 -14.98908 -13.99178 -13.53622 -13.24648 -12.55762 -12.45754 -12.31159 -12.20412 -12.06556 -11.64372 -11.38544 -10.91869 -10.70042 -10.64911 -8.56769 -6.34109 1.05897 1.35435 1.40347 1.51567 1.60417 2.03108 2.45366 2.56928 2.67829 2.98885 3.53569 3.72841 3.94052 4.32438 4.56113 4.83387 4.84802 5.09849 5.17411 5.77799 5.82947 6.39956 6.53952 6.89879 7.22219 7.66239 8.62448 Molecular weight = 199.07amu Principal moments of inertia in cm(-1) A = 0.051076 B = 0.011215 C = 0.009708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.073485 B = 2496.090213 C = 2883.597831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.008 3.992 3 Si 1.013 2.987 4 H -0.265 1.265 5 H -0.261 1.261 6 H -0.267 1.267 7 C -0.422 4.422 8 H 0.081 0.919 9 O -0.227 6.227 10 C 0.433 3.567 11 O -0.568 6.568 12 C -0.196 4.196 13 C 0.563 3.437 14 N -0.829 5.829 15 O -0.576 6.576 16 C -0.101 4.101 17 C -0.103 4.103 18 H 0.281 0.719 19 H 0.419 0.581 20 H 0.408 0.592 21 H 0.117 0.883 22 H 0.136 0.864 23 H 0.130 0.870 24 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.568 -4.716 2.309 5.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.194 4.194 3 Si 0.832 3.168 4 H -0.190 1.190 5 H -0.185 1.185 6 H -0.191 1.191 7 C -0.497 4.497 8 H 0.099 0.901 9 O -0.135 6.135 10 C 0.280 3.720 11 O -0.466 6.466 12 C -0.201 4.201 13 C 0.347 3.653 14 N -0.394 5.394 15 O -0.457 6.457 16 C -0.138 4.138 17 C -0.140 4.140 18 H 0.091 0.909 19 H 0.254 0.746 20 H 0.239 0.761 21 H 0.135 0.865 22 H 0.154 0.846 23 H 0.148 0.852 24 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -0.498 -5.192 2.025 5.595 hybrid contribution 0.115 1.321 -0.190 1.339 sum -0.383 -3.871 1.835 4.301 Atomic orbital electron populations 1.69955 1.07054 1.29602 1.45846 1.26316 0.96940 1.01640 0.94529 0.84678 0.77785 0.75066 0.79231 1.18992 1.18458 1.19127 1.21391 0.92265 0.80622 1.55459 0.90076 1.83552 1.39758 1.13757 1.76422 1.22493 0.86062 0.86322 0.77113 1.90536 1.16341 1.88000 1.51673 1.21016 0.98595 0.90207 1.10273 1.19101 0.83771 0.83124 0.79263 1.44087 1.23673 1.16798 1.54878 1.90653 1.76136 1.31810 1.47136 1.23306 1.03633 0.97196 0.89697 1.23202 0.98432 0.92712 0.99634 0.90949 0.74595 0.76067 0.86454 0.84605 0.85156 0.86781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -47.05 13.67 21.62 0.30 -46.76 14 2 C 0.01 0.41 5.49 84.87 0.47 0.88 14 3 Si 1.01 40.84 29.55 68.60 2.03 42.87 14 4 H -0.26 -10.31 7.11 99.48 0.71 -9.60 14 5 H -0.26 -9.73 7.11 99.48 0.71 -9.02 14 6 H -0.27 -10.70 7.11 99.48 0.71 -9.99 14 7 C -0.42 -23.85 9.64 67.94 0.66 -23.19 14 8 H 0.08 4.74 6.86 -2.91 -0.02 4.72 14 9 O -0.23 -12.15 6.83 14.89 0.10 -12.05 14 10 C 0.43 21.18 7.43 71.23 0.53 21.71 14 11 O -0.57 -30.27 15.49 20.77 0.32 -29.94 14 12 C -0.20 -7.58 2.56 -53.68 -0.14 -7.71 14 13 C 0.56 22.19 7.65 87.66 0.67 22.86 14 14 N -0.83 -31.26 8.69 -173.54 -1.51 -32.76 14 15 O -0.58 -23.84 17.09 -3.04 -0.05 -23.89 14 16 C -0.10 -2.90 9.94 30.61 0.30 -2.59 14 17 C -0.10 -3.17 9.56 30.61 0.29 -2.88 14 18 H 0.28 13.61 8.31 -92.71 -0.77 12.84 14 19 H 0.42 17.83 5.99 -92.70 -0.56 17.28 14 20 H 0.41 13.13 8.93 -92.71 -0.83 12.30 14 21 H 0.12 3.20 8.14 -2.38 -0.02 3.18 14 22 H 0.14 3.16 8.14 -2.39 -0.02 3.14 14 23 H 0.13 3.63 7.67 -2.39 -0.02 3.61 14 24 H 0.11 3.55 7.67 -2.39 -0.02 3.53 14 Total: -1.00 -65.34 226.64 3.84 -61.50 By element: Atomic # 1 Polarization: 32.10 SS G_CDS: -0.13 Total: 31.97 kcal Atomic # 6 Polarization: 6.29 SS G_CDS: 2.78 Total: 9.07 kcal Atomic # 7 Polarization: -78.31 SS G_CDS: -1.21 Total: -79.52 kcal Atomic # 8 Polarization: -66.26 SS G_CDS: 0.37 Total: -65.89 kcal Atomic # 14 Polarization: 40.84 SS G_CDS: 2.03 Total: 42.87 kcal Total: -65.34 3.84 -61.50 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308082763.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.885 kcal (2) G-P(sol) polarization free energy of solvation -65.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds