Wall clock time and date at job start Sun Mar 29 2020 22:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.37094 * 119.99847 * 2 1 4 4 H 1.08003 * 119.99864 * 142.82591 * 3 2 1 5 5 C 1.38955 * 120.00325 * 322.82660 * 3 2 1 6 6 N 1.31411 * 119.99943 * 158.40875 * 5 3 2 7 7 Si 1.86799 * 119.99786 * 338.41041 * 5 3 2 8 8 H 1.48494 * 109.47197 * 95.72001 * 7 5 3 9 9 H 1.48506 * 109.46755 * 215.71894 * 7 5 3 10 10 H 1.48500 * 109.47275 * 335.71557 * 7 5 3 11 11 C 1.34773 * 119.99941 * 180.02562 * 2 1 3 12 12 O 1.21298 * 119.99844 * 180.02562 * 11 2 1 13 13 C 1.50697 * 120.00298 * 359.97438 * 11 2 1 14 14 C 1.52999 * 109.47503 * 180.02562 * 13 11 2 15 15 C 1.54039 * 113.81161 * 86.49283 * 14 13 11 16 16 O 1.44577 * 85.37901 * 136.87004 * 15 14 13 17 17 C 1.44179 * 93.32763 * 335.79997 * 16 15 14 18 18 H 1.08996 * 109.46971 * 265.13714 * 1 2 3 19 19 H 1.09006 * 109.46888 * 25.13319 * 1 2 3 20 20 H 1.08998 * 109.46913 * 145.13276 * 1 2 3 21 21 H 0.97007 * 120.00033 * 180.02562 * 6 5 3 22 22 H 1.09004 * 109.46899 * 59.99938 * 13 11 2 23 23 H 1.09006 * 109.47242 * 300.00326 * 13 11 2 24 24 H 1.08996 * 112.99860 * 314.67178 * 14 13 11 25 25 H 1.09002 * 113.86225 * 251.06731 * 15 14 13 26 26 H 1.08988 * 113.86841 * 22.78423 * 15 14 13 27 27 H 1.09000 * 113.86575 * 270.05113 * 17 16 15 28 28 H 1.08996 * 113.98083 * 138.35301 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.0659 1.2823 0.5652 5 6 1.6675 2.2684 -0.7271 6 7 2.0433 3.4890 -0.4175 7 14 0.4840 1.9868 -2.1446 8 1 -0.9112 2.1586 -1.6662 9 1 0.7617 2.9684 -3.2238 10 1 0.6607 0.6094 -2.6709 11 6 2.1389 -1.1672 -0.0005 12 8 3.3519 -1.1672 -0.0001 13 6 1.3855 -2.4723 -0.0005 14 6 2.3797 -3.6352 -0.0005 15 6 2.8493 -4.0519 1.4061 16 8 2.6719 -5.4076 0.9362 17 6 1.7141 -5.0226 -0.0704 18 1 -0.3633 -0.0871 1.0239 19 1 -0.3633 0.9304 -0.4365 20 1 -0.3633 -0.8432 -0.5875 21 1 1.7058 4.2438 -0.9248 22 1 0.7584 -2.5298 -0.8903 23 1 0.7591 -2.5302 0.8897 24 1 3.1926 -3.5005 -0.7140 25 1 3.8853 -3.7897 1.6208 26 1 2.1619 -3.7678 2.2027 27 1 0.6809 -5.0340 0.2767 28 1 1.8486 -5.5285 -1.0264 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379336019.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:23 Heat of formation + Delta-G solvation = -35.642622 kcal Electronic energy + Delta-G solvation = -12933.935180 eV Core-core repulsion = 10566.062537 eV Total energy + Delta-G solvation = -2367.872643 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 199.100 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.22434 -38.43675 -34.84123 -32.25989 -31.60792 -26.97752 -26.35158 -26.27081 -24.10624 -20.07168 -18.83487 -17.08570 -16.40395 -16.05572 -15.78316 -15.10844 -15.04783 -14.51844 -13.48648 -12.94629 -12.67153 -12.55049 -12.38338 -11.87853 -11.79970 -11.26131 -10.82503 -10.66451 -10.42694 -10.26484 -9.94671 -9.51071 -9.09476 -8.51509 -7.76275 -6.41319 -3.98360 3.00252 3.19452 3.23348 3.71163 3.85937 4.12005 4.29563 4.64249 4.94425 5.09308 5.31114 5.41115 5.48331 5.62861 5.72062 5.81264 5.90249 5.95501 6.12577 6.24695 6.25123 6.25510 6.47419 7.52700 8.26827 8.49214 8.95091 9.30241 9.75535 10.70963 Molecular weight = 199.10amu Principal moments of inertia in cm(-1) A = 0.066305 B = 0.009352 C = 0.008756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 422.187764 B = 2993.195487 C = 3197.043269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.473 5.473 3 C -0.318 4.318 4 H 0.105 0.895 5 C 0.058 3.942 6 N -0.865 5.865 7 Si 0.881 3.119 8 H -0.276 1.276 9 H -0.288 1.288 10 H -0.266 1.266 11 C 0.462 3.538 12 O -0.566 6.566 13 C -0.137 4.137 14 C -0.132 4.132 15 C 0.044 3.956 16 O -0.389 6.389 17 C 0.034 3.966 18 H 0.051 0.949 19 H 0.065 0.935 20 H 0.054 0.946 21 H 0.274 0.726 22 H 0.085 0.915 23 H 0.082 0.918 24 H 0.111 0.889 25 H 0.094 0.906 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.369 -11.138 -0.260 12.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.195 5.195 3 C -0.445 4.445 4 H 0.123 0.877 5 C -0.148 4.148 6 N -0.501 5.501 7 Si 0.709 3.291 8 H -0.203 1.203 9 H -0.215 1.215 10 H -0.190 1.190 11 C 0.251 3.749 12 O -0.447 6.447 13 C -0.177 4.177 14 C -0.151 4.151 15 C -0.033 4.033 16 O -0.308 6.308 17 C -0.043 4.043 18 H 0.070 0.930 19 H 0.083 0.917 20 H 0.073 0.927 21 H 0.084 0.916 22 H 0.104 0.896 23 H 0.101 0.899 24 H 0.129 0.871 25 H 0.112 0.888 26 H 0.096 0.904 27 H 0.096 0.904 28 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -5.644 -11.153 -0.212 12.502 hybrid contribution -0.914 0.352 -0.859 1.302 sum -6.558 -10.801 -1.070 12.681 Atomic orbital electron populations 1.21996 0.83493 1.01546 1.00952 1.43717 1.04005 1.05854 1.65916 1.19065 1.10138 0.85555 1.29733 0.87748 1.25378 0.97495 0.94780 0.97125 1.69759 1.43928 0.98089 1.38349 0.86905 0.80167 0.78937 0.83082 1.20305 1.21451 1.18993 1.20227 0.88227 0.84697 0.81771 1.90551 1.13894 1.87012 1.53290 1.21737 0.98795 0.94038 1.03178 1.24062 0.98912 0.93115 0.98968 1.24064 1.02686 0.80436 0.96084 1.89684 1.60239 1.28029 1.52875 1.24026 0.93572 0.93878 0.92784 0.93025 0.91660 0.92738 0.91595 0.89645 0.89916 0.87111 0.88790 0.90368 0.90419 0.89443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.22 8.78 59.85 0.53 1.75 15 2 N -0.47 -11.37 2.59 -122.19 -0.32 -11.69 15 3 C -0.32 -9.05 9.37 -14.93 -0.14 -9.19 15 4 H 0.10 3.35 7.90 -52.48 -0.41 2.93 15 5 C 0.06 1.60 5.29 -17.47 -0.09 1.51 15 6 N -0.86 -25.09 13.96 55.50 0.77 -24.32 15 7 Si 0.88 20.45 24.96 -169.99 -4.24 16.21 15 8 H -0.28 -5.91 6.69 56.52 0.38 -5.53 15 9 H -0.29 -6.73 7.11 56.52 0.40 -6.33 15 10 H -0.27 -6.08 7.11 56.52 0.40 -5.68 15 11 C 0.46 10.48 7.63 -10.99 -0.08 10.40 15 12 O -0.57 -14.97 15.66 5.54 0.09 -14.89 15 13 C -0.14 -2.20 4.16 -27.89 -0.12 -2.32 15 14 C -0.13 -2.01 3.35 -89.54 -0.30 -2.31 15 15 C 0.04 0.66 8.80 37.64 0.33 0.99 15 16 O -0.39 -5.99 12.47 -35.23 -0.44 -6.43 15 17 C 0.03 0.43 8.79 37.64 0.33 0.76 15 18 H 0.05 0.87 8.14 -51.93 -0.42 0.44 15 19 H 0.07 1.34 3.42 -51.93 -0.18 1.16 15 20 H 0.05 0.85 6.64 -51.93 -0.34 0.51 15 21 H 0.27 7.32 8.31 -40.82 -0.34 6.98 15 22 H 0.09 1.21 7.41 -51.93 -0.38 0.82 15 23 H 0.08 1.15 7.84 -51.93 -0.41 0.74 15 24 H 0.11 1.89 7.74 -51.93 -0.40 1.49 15 25 H 0.09 1.45 8.14 -51.93 -0.42 1.02 15 26 H 0.08 1.06 7.92 -51.94 -0.41 0.65 15 27 H 0.08 0.81 8.10 -51.93 -0.42 0.39 15 28 H 0.09 0.94 8.14 -51.93 -0.42 0.52 15 LS Contribution 236.41 15.07 3.56 3.56 Total: -1.00 -32.35 236.41 -3.51 -35.86 By element: Atomic # 1 Polarization: 3.50 SS G_CDS: -3.39 Total: 0.11 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: 0.46 Total: 1.58 kcal Atomic # 7 Polarization: -36.46 SS G_CDS: 0.46 Total: -36.01 kcal Atomic # 8 Polarization: -20.96 SS G_CDS: -0.35 Total: -21.31 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -4.24 Total: 16.21 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -32.35 -3.51 -35.86 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379336019.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.216 kcal (2) G-P(sol) polarization free energy of solvation -32.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds