Wall clock time and date at job start Sun Mar 29 2020 22:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.37094 * 119.99847 * 2 1 4 4 H 1.08003 * 119.99864 * 142.82591 * 3 2 1 5 5 C 1.38955 * 120.00325 * 322.82660 * 3 2 1 6 6 N 1.31411 * 119.99943 * 158.40875 * 5 3 2 7 7 Si 1.86799 * 119.99786 * 338.41041 * 5 3 2 8 8 H 1.48494 * 109.47197 * 95.72001 * 7 5 3 9 9 H 1.48506 * 109.46755 * 215.71894 * 7 5 3 10 10 H 1.48500 * 109.47275 * 335.71557 * 7 5 3 11 11 C 1.34773 * 119.99941 * 180.02562 * 2 1 3 12 12 O 1.21298 * 119.99844 * 180.02562 * 11 2 1 13 13 C 1.50697 * 120.00298 * 359.97438 * 11 2 1 14 14 C 1.52999 * 109.47503 * 180.02562 * 13 11 2 15 15 C 1.54039 * 113.81161 * 86.49283 * 14 13 11 16 16 O 1.44577 * 85.37901 * 136.87004 * 15 14 13 17 17 C 1.44179 * 93.32763 * 335.79997 * 16 15 14 18 18 H 1.08996 * 109.46971 * 265.13714 * 1 2 3 19 19 H 1.09006 * 109.46888 * 25.13319 * 1 2 3 20 20 H 1.08998 * 109.46913 * 145.13276 * 1 2 3 21 21 H 0.97007 * 120.00033 * 180.02562 * 6 5 3 22 22 H 1.09004 * 109.46899 * 59.99938 * 13 11 2 23 23 H 1.09006 * 109.47242 * 300.00326 * 13 11 2 24 24 H 1.08996 * 112.99860 * 314.67178 * 14 13 11 25 25 H 1.09002 * 113.86225 * 251.06731 * 15 14 13 26 26 H 1.08988 * 113.86841 * 22.78423 * 15 14 13 27 27 H 1.09000 * 113.86575 * 270.05113 * 17 16 15 28 28 H 1.08996 * 113.98083 * 138.35301 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.0659 1.2823 0.5652 5 6 1.6675 2.2684 -0.7271 6 7 2.0433 3.4890 -0.4175 7 14 0.4840 1.9868 -2.1446 8 1 -0.9112 2.1586 -1.6662 9 1 0.7617 2.9684 -3.2238 10 1 0.6607 0.6094 -2.6709 11 6 2.1389 -1.1672 -0.0005 12 8 3.3519 -1.1672 -0.0001 13 6 1.3855 -2.4723 -0.0005 14 6 2.3797 -3.6352 -0.0005 15 6 2.8493 -4.0519 1.4061 16 8 2.6719 -5.4076 0.9362 17 6 1.7141 -5.0226 -0.0704 18 1 -0.3633 -0.0871 1.0239 19 1 -0.3633 0.9304 -0.4365 20 1 -0.3633 -0.8432 -0.5875 21 1 1.7058 4.2438 -0.9248 22 1 0.7584 -2.5298 -0.8903 23 1 0.7591 -2.5302 0.8897 24 1 3.1926 -3.5005 -0.7140 25 1 3.8853 -3.7897 1.6208 26 1 2.1619 -3.7678 2.2027 27 1 0.6809 -5.0340 0.2767 28 1 1.8486 -5.5285 -1.0264 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379336019.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:22 Heat of formation + Delta-G solvation = -60.758434 kcal Electronic energy + Delta-G solvation = -12935.024283 eV Core-core repulsion = 10566.062537 eV Total energy + Delta-G solvation = -2368.961747 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 199.100 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.43515 -40.12364 -36.71942 -34.19943 -33.05310 -28.58621 -27.81702 -27.38177 -25.86342 -21.37869 -20.44274 -19.05027 -17.91861 -17.48469 -17.26184 -16.45394 -16.42604 -16.04463 -15.24486 -14.60460 -14.34794 -14.13436 -13.62884 -13.42866 -13.34948 -12.71133 -12.52031 -12.25665 -11.83168 -11.78490 -11.46192 -11.05077 -10.59311 -10.34340 -9.69557 -8.51959 -6.14886 1.20252 1.33552 1.45998 1.97978 2.18019 2.71640 2.79686 2.96126 3.41434 3.89198 4.00136 4.28291 4.34560 4.45201 4.52509 4.56874 4.67932 4.75722 4.84352 4.86458 5.11292 5.21580 5.31982 5.53328 6.02909 6.56833 6.95065 7.31829 7.89791 8.65825 Molecular weight = 199.10amu Principal moments of inertia in cm(-1) A = 0.066305 B = 0.009352 C = 0.008756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 422.187764 B = 2993.195487 C = 3197.043269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.488 5.488 3 C -0.340 4.340 4 H 0.039 0.961 5 C 0.006 3.994 6 N -0.915 5.915 7 Si 0.959 3.041 8 H -0.237 1.237 9 H -0.293 1.293 10 H -0.255 1.255 11 C 0.453 3.547 12 O -0.619 6.619 13 C -0.121 4.121 14 C -0.141 4.141 15 C 0.039 3.961 16 O -0.410 6.410 17 C 0.050 3.950 18 H 0.076 0.924 19 H 0.053 0.947 20 H 0.102 0.898 21 H 0.280 0.720 22 H 0.119 0.881 23 H 0.117 0.883 24 H 0.082 0.918 25 H 0.074 0.926 26 H 0.098 0.902 27 H 0.111 0.889 28 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.855 -13.176 -1.350 16.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.211 5.211 3 C -0.468 4.468 4 H 0.057 0.943 5 C -0.195 4.195 6 N -0.553 5.553 7 Si 0.782 3.218 8 H -0.162 1.162 9 H -0.220 1.220 10 H -0.179 1.179 11 C 0.244 3.756 12 O -0.504 6.504 13 C -0.161 4.161 14 C -0.160 4.160 15 C -0.037 4.037 16 O -0.329 6.329 17 C -0.026 4.026 18 H 0.094 0.906 19 H 0.071 0.929 20 H 0.120 0.880 21 H 0.089 0.911 22 H 0.137 0.863 23 H 0.135 0.865 24 H 0.100 0.900 25 H 0.093 0.907 26 H 0.116 0.884 27 H 0.129 0.871 28 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -9.168 -13.209 -1.282 16.129 hybrid contribution 0.282 0.981 -0.437 1.110 sum -8.886 -12.228 -1.719 15.213 Atomic orbital electron populations 1.22272 0.79942 1.02888 1.03494 1.43897 1.06199 1.04661 1.66319 1.18672 1.09318 0.88384 1.30388 0.94294 1.26260 1.00045 0.93783 0.99439 1.69888 1.46262 0.99335 1.39795 0.85693 0.79197 0.78919 0.77993 1.16188 1.22038 1.17898 1.21495 0.88091 0.86556 0.79494 1.90526 1.16789 1.88100 1.55030 1.21749 0.98608 0.89397 1.06305 1.24058 0.98703 0.94854 0.98390 1.24120 1.02227 0.80590 0.96766 1.89669 1.61493 1.27991 1.53794 1.24236 0.94379 0.90880 0.93119 0.90573 0.92869 0.88007 0.91065 0.86280 0.86455 0.89977 0.90748 0.88438 0.87080 0.87635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.91 8.78 127.77 1.12 3.03 15 2 N -0.49 -23.06 2.59 -658.88 -1.70 -24.76 15 3 C -0.34 -20.09 9.37 84.04 0.79 -19.30 15 4 H 0.04 2.73 7.90 -2.91 -0.02 2.70 15 5 C 0.01 0.36 5.29 84.93 0.45 0.80 15 6 N -0.92 -54.90 13.96 21.66 0.30 -54.60 15 7 Si 0.96 41.19 24.96 68.60 1.71 42.90 15 8 H -0.24 -8.72 6.69 99.48 0.67 -8.05 15 9 H -0.29 -12.74 7.11 99.48 0.71 -12.04 15 10 H -0.26 -10.45 7.11 99.48 0.71 -9.74 15 11 C 0.45 20.19 7.63 87.66 0.67 20.85 15 12 O -0.62 -34.06 15.66 -3.09 -0.05 -34.11 15 13 C -0.12 -3.40 4.16 29.85 0.12 -3.28 15 14 C -0.14 -3.98 3.35 -10.09 -0.03 -4.02 15 15 C 0.04 1.13 8.80 72.30 0.64 1.77 15 16 O -0.41 -11.65 12.47 -148.98 -1.86 -13.51 15 17 C 0.05 1.03 8.79 72.30 0.64 1.67 15 18 H 0.08 2.22 8.14 -2.39 -0.02 2.20 15 19 H 0.05 1.95 3.42 -2.38 -0.01 1.94 15 20 H 0.10 2.50 6.64 -2.39 -0.02 2.48 15 21 H 0.28 15.31 8.31 -92.70 -0.77 14.54 15 22 H 0.12 2.62 7.41 -2.38 -0.02 2.60 15 23 H 0.12 2.57 7.84 -2.38 -0.02 2.55 15 24 H 0.08 2.79 7.74 -2.39 -0.02 2.77 15 25 H 0.07 2.36 8.14 -2.39 -0.02 2.34 15 26 H 0.10 2.39 7.92 -2.39 -0.02 2.37 15 27 H 0.11 1.61 8.10 -2.39 -0.02 1.59 15 28 H 0.11 1.81 8.14 -2.39 -0.02 1.79 15 Total: -1.00 -76.41 236.41 3.91 -72.50 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: 1.11 Total: 10.05 kcal Atomic # 6 Polarization: -2.87 SS G_CDS: 4.39 Total: 1.52 kcal Atomic # 7 Polarization: -77.95 SS G_CDS: -1.40 Total: -79.36 kcal Atomic # 8 Polarization: -45.71 SS G_CDS: -1.91 Total: -47.62 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 1.71 Total: 42.90 kcal Total: -76.41 3.91 -72.50 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379336019.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.744 kcal (2) G-P(sol) polarization free energy of solvation -76.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds