Wall clock time and date at job start Sun Mar 29 2020 21:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86803 * 119.99997 * 2 1 4 4 H 1.48501 * 109.47052 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47022 * 299.99835 * 3 2 1 6 6 H 1.48497 * 109.46960 * 59.99723 * 3 2 1 7 7 C 1.37879 * 119.99893 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00032 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99841 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47065 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.47248 * 179.97438 * 10 9 7 12 12 O 1.20822 * 119.99804 * 0.02562 * 11 10 9 13 13 O 1.34231 * 120.00053 * 180.02562 * 11 10 9 14 14 C 1.45198 * 116.99983 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.46884 * 179.97438 * 14 13 11 16 16 C 1.53003 * 117.49371 * 243.61793 * 15 14 13 17 17 C 1.53001 * 117.49608 * 174.99868 * 15 14 13 18 18 H 0.96999 * 119.99519 * 0.02562 * 1 2 3 19 19 H 1.08998 * 109.47403 * 59.99366 * 9 7 2 20 20 H 1.09004 * 109.46639 * 299.99509 * 9 7 2 21 21 H 1.09008 * 109.46866 * 59.99299 * 10 9 7 22 22 H 1.09001 * 109.47046 * 300.00182 * 10 9 7 23 23 H 1.09002 * 109.47379 * 59.99613 * 14 13 11 24 24 H 1.09001 * 109.46782 * 299.99696 * 14 13 11 25 25 H 1.08995 * 115.55630 * 29.32479 * 15 14 13 26 26 H 1.08998 * 117.50656 * 0.02562 * 16 15 14 27 27 H 1.09001 * 117.49674 * 145.02590 * 16 15 14 28 28 H 1.09003 * 117.49710 * 214.97494 * 17 15 14 29 29 H 1.08998 * 117.50185 * 359.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4917 -4.9672 0.0012 12 8 0.2835 -4.9671 0.0011 13 8 2.1628 -6.1297 0.0018 14 6 1.3720 -7.3474 0.0018 15 6 2.3040 -8.5607 0.0019 16 6 2.2561 -9.4883 -1.2139 17 6 1.6621 -9.9445 0.1203 18 1 -0.4849 0.8401 -0.0004 19 1 0.6246 -2.5571 -0.8896 20 1 0.6241 -2.5566 0.8904 21 1 2.8720 -3.6043 0.8905 22 1 2.8719 -3.6044 -0.8894 23 1 0.7435 -7.3725 -0.8884 24 1 0.7428 -7.3719 0.8916 25 1 3.2703 -8.4114 0.4836 26 1 1.5610 -9.2340 -2.0140 27 1 3.1911 -9.9493 -1.5324 28 1 2.2064 -10.7056 0.6795 29 1 0.5759 -9.9905 0.1985 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388418731.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:26:27 Heat of formation + Delta-G solvation = -81.787093 kcal Electronic energy + Delta-G solvation = -11999.211584 eV Core-core repulsion = 9694.763877 eV Total energy + Delta-G solvation = -2304.447707 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.93935 -37.59823 -35.72722 -33.56956 -31.15750 -27.97302 -25.68206 -22.61525 -22.16129 -20.80339 -19.73040 -17.35037 -16.58667 -16.15452 -15.73312 -14.89772 -14.44046 -14.14925 -13.73060 -12.58290 -12.37110 -12.24321 -11.75208 -11.48109 -11.14288 -10.97944 -10.76658 -10.73946 -10.60737 -10.06432 -9.93880 -9.88418 -9.52545 -9.15360 -8.37529 -6.01135 -4.05880 2.85296 3.03792 3.31174 3.38475 3.42287 3.63157 4.43967 4.56618 4.69041 4.77456 5.14217 5.34325 5.37806 5.41761 5.51365 5.63138 5.67311 5.88606 6.04445 6.14180 6.22699 6.68223 6.97232 7.67613 7.74443 7.98824 8.27227 8.43631 9.01580 9.58165 11.09956 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.109488 B = 0.005517 C = 0.005347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 255.673722 B = 5074.039439 C = 5235.011557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.896 3.104 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.527 4.527 8 H 0.059 0.941 9 C 0.032 3.968 10 C -0.103 4.103 11 C 0.456 3.544 12 O -0.508 6.508 13 O -0.365 6.365 14 C 0.094 3.906 15 C -0.155 4.155 16 C -0.178 4.178 17 C -0.173 4.173 18 H 0.261 0.739 19 H 0.026 0.974 20 H 0.026 0.974 21 H 0.092 0.908 22 H 0.092 0.908 23 H 0.067 0.933 24 H 0.071 0.929 25 H 0.117 0.883 26 H 0.096 0.904 27 H 0.097 0.903 28 H 0.099 0.901 29 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.090 -15.651 -0.381 16.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.566 4.566 8 H 0.078 0.922 9 C -0.005 4.005 10 C -0.141 4.141 11 C 0.300 3.700 12 O -0.394 6.394 13 O -0.283 6.283 14 C 0.020 3.980 15 C -0.173 4.173 16 C -0.215 4.215 17 C -0.210 4.210 18 H 0.071 0.929 19 H 0.044 0.956 20 H 0.044 0.956 21 H 0.110 0.890 22 H 0.111 0.889 23 H 0.086 0.914 24 H 0.089 0.911 25 H 0.135 0.865 26 H 0.115 0.885 27 H 0.115 0.885 28 H 0.117 0.883 29 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 4.552 -15.564 -0.382 16.221 hybrid contribution 0.243 0.811 -0.001 0.846 sum 4.795 -14.754 -0.382 15.518 Atomic orbital electron populations 1.70010 1.06097 1.26632 1.50078 1.25035 0.94865 0.99365 0.95150 0.86480 0.80025 0.83542 0.77606 1.19640 1.20971 1.20974 1.21201 0.93121 0.90636 1.51598 0.92234 1.19028 0.93258 0.89323 0.98899 1.21761 1.00654 0.87650 1.04010 1.24772 0.87923 0.85702 0.71596 1.90630 1.15952 1.87742 1.45096 1.86543 1.42069 1.14893 1.84757 1.22410 0.92288 0.80991 1.02293 1.22158 1.01676 0.89781 1.03683 1.23103 1.03152 1.03469 0.91733 1.22988 1.00888 0.96384 1.00702 0.92911 0.95591 0.95578 0.88951 0.88941 0.91423 0.91098 0.86508 0.88527 0.88468 0.88271 0.88517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.21 13.29 55.43 0.74 -26.47 15 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 15 3 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 15 4 H -0.27 -6.33 7.11 56.52 0.40 -5.93 15 5 H -0.28 -6.76 7.11 56.52 0.40 -6.36 15 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 15 7 C -0.53 -14.88 9.11 -34.44 -0.31 -15.19 15 8 H 0.06 1.59 7.74 -52.49 -0.41 1.18 15 9 C 0.03 0.86 4.26 -27.88 -0.12 0.74 15 10 C -0.10 -2.15 5.75 -27.88 -0.16 -2.31 15 11 C 0.46 9.28 7.96 36.00 0.29 9.57 15 12 O -0.51 -11.88 15.73 -18.75 -0.29 -12.18 15 13 O -0.36 -6.28 10.22 -39.26 -0.40 -6.68 15 14 C 0.09 1.34 5.75 37.16 0.21 1.55 15 15 C -0.15 -1.71 6.07 -90.62 -0.55 -2.26 15 16 C -0.18 -1.65 10.18 -26.73 -0.27 -1.92 15 17 C -0.17 -1.51 10.25 -26.73 -0.27 -1.78 15 18 H 0.26 7.47 8.31 -40.82 -0.34 7.13 15 19 H 0.03 0.75 8.10 -51.93 -0.42 0.33 15 20 H 0.03 0.75 8.10 -51.93 -0.42 0.33 15 21 H 0.09 1.76 8.14 -51.92 -0.42 1.34 15 22 H 0.09 1.77 8.14 -51.93 -0.42 1.35 15 23 H 0.07 0.96 7.87 -51.93 -0.41 0.55 15 24 H 0.07 1.00 8.13 -51.93 -0.42 0.58 15 25 H 0.12 1.26 8.14 -51.93 -0.42 0.84 15 26 H 0.10 0.89 8.03 -51.93 -0.42 0.47 15 27 H 0.10 0.78 8.14 -51.93 -0.42 0.35 15 28 H 0.10 0.72 8.14 -51.93 -0.42 0.30 15 29 H 0.10 0.80 8.14 -51.93 -0.42 0.38 15 LS Contribution 260.01 15.07 3.92 3.92 Total: -1.00 -31.91 260.01 -6.52 -38.42 By element: Atomic # 1 Polarization: 0.65 SS G_CDS: -4.17 Total: -3.52 kcal Atomic # 6 Polarization: -8.75 SS G_CDS: -1.29 Total: -10.03 kcal Atomic # 7 Polarization: -27.21 SS G_CDS: 0.74 Total: -26.47 kcal Atomic # 8 Polarization: -18.16 SS G_CDS: -0.70 Total: -18.86 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -31.91 -6.52 -38.42 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388418731.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.364 kcal (2) G-P(sol) polarization free energy of solvation -31.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds