Wall clock time and date at job start Sun Mar 29 2020 21:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86803 * 119.99997 * 2 1 4 4 H 1.48501 * 109.47052 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47022 * 299.99835 * 3 2 1 6 6 H 1.48497 * 109.46960 * 59.99723 * 3 2 1 7 7 C 1.37879 * 119.99893 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00032 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99841 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47065 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.47248 * 179.97438 * 10 9 7 12 12 O 1.20822 * 119.99804 * 0.02562 * 11 10 9 13 13 O 1.34231 * 120.00053 * 180.02562 * 11 10 9 14 14 C 1.45198 * 116.99983 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.46884 * 179.97438 * 14 13 11 16 16 C 1.53003 * 117.49371 * 243.61793 * 15 14 13 17 17 C 1.53001 * 117.49608 * 174.99868 * 15 14 13 18 18 H 0.96999 * 119.99519 * 0.02562 * 1 2 3 19 19 H 1.08998 * 109.47403 * 59.99366 * 9 7 2 20 20 H 1.09004 * 109.46639 * 299.99509 * 9 7 2 21 21 H 1.09008 * 109.46866 * 59.99299 * 10 9 7 22 22 H 1.09001 * 109.47046 * 300.00182 * 10 9 7 23 23 H 1.09002 * 109.47379 * 59.99613 * 14 13 11 24 24 H 1.09001 * 109.46782 * 299.99696 * 14 13 11 25 25 H 1.08995 * 115.55630 * 29.32479 * 15 14 13 26 26 H 1.08998 * 117.50656 * 0.02562 * 16 15 14 27 27 H 1.09001 * 117.49674 * 145.02590 * 16 15 14 28 28 H 1.09003 * 117.49710 * 214.97494 * 17 15 14 29 29 H 1.08998 * 117.50185 * 359.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4917 -4.9672 0.0012 12 8 0.2835 -4.9671 0.0011 13 8 2.1628 -6.1297 0.0018 14 6 1.3720 -7.3474 0.0018 15 6 2.3040 -8.5607 0.0019 16 6 2.2561 -9.4883 -1.2139 17 6 1.6621 -9.9445 0.1203 18 1 -0.4849 0.8401 -0.0004 19 1 0.6246 -2.5571 -0.8896 20 1 0.6241 -2.5566 0.8904 21 1 2.8720 -3.6043 0.8905 22 1 2.8719 -3.6044 -0.8894 23 1 0.7435 -7.3725 -0.8884 24 1 0.7428 -7.3719 0.8916 25 1 3.2703 -8.4114 0.4836 26 1 1.5610 -9.2340 -2.0140 27 1 3.1911 -9.9493 -1.5324 28 1 2.2064 -10.7056 0.6795 29 1 0.5759 -9.9905 0.1985 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388418731.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:26:27 Heat of formation + Delta-G solvation = -100.575553 kcal Electronic energy + Delta-G solvation = -12000.026313 eV Core-core repulsion = 9694.763877 eV Total energy + Delta-G solvation = -2305.262436 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.49983 -38.61851 -37.11264 -35.65575 -33.16724 -29.31984 -27.55312 -24.12043 -23.28449 -21.77275 -21.39303 -19.09858 -18.25105 -17.69255 -17.25490 -16.48981 -16.02165 -15.35449 -15.04058 -14.31218 -14.09322 -13.97431 -13.22810 -12.86488 -12.51600 -12.43695 -12.39000 -12.06947 -11.99434 -11.76719 -11.63210 -11.34463 -11.16199 -10.90423 -10.59192 -8.20604 -6.34438 1.21647 1.43294 1.44546 1.57819 1.67222 2.42914 2.81976 3.13251 3.61351 3.84664 3.91192 4.13628 4.16783 4.37120 4.43542 4.49756 4.52035 4.75872 4.90833 4.98496 5.16974 5.22225 5.40419 5.47710 5.54272 5.80155 6.12603 6.77922 6.85758 7.35902 8.92366 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.109488 B = 0.005517 C = 0.005347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 255.673722 B = 5074.039439 C = 5235.011557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.006 4.006 3 Si 0.976 3.024 4 H -0.253 1.253 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.543 4.543 8 H 0.078 0.922 9 C 0.037 3.963 10 C -0.094 4.094 11 C 0.464 3.536 12 O -0.547 6.547 13 O -0.355 6.355 14 C 0.088 3.912 15 C -0.173 4.173 16 C -0.174 4.174 17 C -0.157 4.157 18 H 0.264 0.736 19 H -0.010 1.010 20 H -0.010 1.010 21 H 0.117 0.883 22 H 0.117 0.883 23 H 0.064 0.936 24 H 0.068 0.932 25 H 0.121 0.879 26 H 0.094 0.906 27 H 0.114 0.886 28 H 0.120 0.880 29 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.188 -16.309 -0.408 17.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.204 4.204 3 Si 0.800 3.200 4 H -0.176 1.176 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.581 4.581 8 H 0.096 0.904 9 C 0.000 4.000 10 C -0.131 4.131 11 C 0.310 3.690 12 O -0.437 6.437 13 O -0.272 6.272 14 C 0.015 3.985 15 C -0.191 4.191 16 C -0.211 4.211 17 C -0.194 4.194 18 H 0.073 0.927 19 H 0.008 0.992 20 H 0.008 0.992 21 H 0.135 0.865 22 H 0.135 0.865 23 H 0.082 0.918 24 H 0.086 0.914 25 H 0.139 0.861 26 H 0.112 0.888 27 H 0.132 0.868 28 H 0.138 0.862 29 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 6.685 -16.258 -0.410 17.583 hybrid contribution -0.441 0.906 0.003 1.008 sum 6.244 -15.351 -0.406 16.577 Atomic orbital electron populations 1.70173 1.08256 1.27888 1.51319 1.26128 0.95759 1.03947 0.94517 0.85237 0.79288 0.77944 0.77564 1.17639 1.20601 1.20607 1.21678 0.94146 0.91241 1.51014 0.90367 1.18814 0.93716 0.92028 0.95456 1.21526 0.99334 0.85958 1.06324 1.24551 0.87152 0.86612 0.70700 1.90621 1.17587 1.88389 1.47088 1.86509 1.41873 1.14931 1.83900 1.22713 0.93090 0.80687 1.02053 1.22115 1.01586 0.89327 1.06101 1.23219 1.03970 1.02348 0.91551 1.23125 1.01291 0.94770 1.00183 0.92743 0.99203 0.99179 0.86513 0.86540 0.91779 0.91417 0.86072 0.88769 0.86814 0.86209 0.88252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.63 13.29 21.45 0.28 -58.34 15 2 C -0.01 -0.34 5.46 84.65 0.46 0.12 15 3 Si 0.98 43.92 29.54 68.60 2.03 45.95 15 4 H -0.25 -10.52 7.11 99.48 0.71 -9.82 15 5 H -0.28 -12.37 7.11 99.48 0.71 -11.67 15 6 H -0.28 -12.38 7.11 99.48 0.71 -11.67 15 7 C -0.54 -30.56 9.11 25.60 0.23 -30.33 15 8 H 0.08 4.02 7.74 -2.91 -0.02 3.99 15 9 C 0.04 2.04 4.26 29.85 0.13 2.17 15 10 C -0.09 -3.87 5.75 29.85 0.17 -3.70 15 11 C 0.46 18.92 7.96 71.24 0.57 19.48 15 12 O -0.55 -26.38 15.73 21.98 0.35 -26.03 15 13 O -0.36 -11.90 10.22 -51.42 -0.53 -12.43 15 14 C 0.09 2.45 5.75 71.98 0.41 2.86 15 15 C -0.17 -3.51 6.07 -10.79 -0.07 -3.57 15 16 C -0.17 -2.82 10.18 30.60 0.31 -2.51 15 17 C -0.16 -2.33 10.25 30.60 0.31 -2.02 15 18 H 0.26 15.41 8.31 -92.71 -0.77 14.64 15 19 H -0.01 -0.64 8.10 -2.39 -0.02 -0.66 15 20 H -0.01 -0.63 8.10 -2.38 -0.02 -0.65 15 21 H 0.12 4.24 8.14 -2.38 -0.02 4.22 15 22 H 0.12 4.24 8.14 -2.39 -0.02 4.22 15 23 H 0.06 1.81 7.87 -2.39 -0.02 1.79 15 24 H 0.07 1.91 8.13 -2.39 -0.02 1.89 15 25 H 0.12 2.36 8.14 -2.39 -0.02 2.34 15 26 H 0.09 1.58 8.03 -2.39 -0.02 1.56 15 27 H 0.11 1.48 8.14 -2.39 -0.02 1.46 15 28 H 0.12 1.32 8.14 -2.39 -0.02 1.30 15 29 H 0.10 1.44 8.14 -2.39 -0.02 1.42 15 Total: -1.00 -69.76 260.01 5.78 -63.98 By element: Atomic # 1 Polarization: 3.25 SS G_CDS: 1.12 Total: 4.37 kcal Atomic # 6 Polarization: -20.03 SS G_CDS: 2.53 Total: -17.49 kcal Atomic # 7 Polarization: -58.63 SS G_CDS: 0.28 Total: -58.34 kcal Atomic # 8 Polarization: -38.28 SS G_CDS: -0.18 Total: -38.46 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -69.76 5.78 -63.98 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388418731.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.594 kcal (2) G-P(sol) polarization free energy of solvation -69.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds