Wall clock time and date at job start Sun Mar 29 2020 21:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.45542 * 2 1 4 4 C 1.53313 * 109.46373 * 119.97493 * 2 1 3 5 5 C 1.51194 * 108.81721 * 200.03058 * 4 2 1 6 6 O 1.21280 * 119.77712 * 108.94561 * 5 4 2 7 7 N 1.33639 * 120.45443 * 289.17121 * 5 4 2 8 8 C 1.46918 * 120.62597 * 359.17837 * 7 5 4 9 9 C 1.53220 * 108.82027 * 72.24131 * 8 7 5 10 10 N 1.46070 * 109.72308 * 278.40281 * 9 8 7 11 11 C 1.36927 * 118.73292 * 243.85772 * 10 9 8 12 12 H 1.08008 * 120.00171 * 211.63701 * 11 10 9 13 13 C 1.38814 * 120.00007 * 31.63708 * 11 10 9 14 14 N 1.31616 * 119.99776 * 16.51894 * 13 11 10 15 15 Si 1.86806 * 119.99847 * 196.51831 * 13 11 10 16 16 H 1.48503 * 109.46939 * 90.00108 * 15 13 11 17 17 H 1.48493 * 109.46913 * 209.99625 * 15 13 11 18 18 H 1.48497 * 109.47151 * 330.00055 * 15 13 11 19 19 H 1.09005 * 109.47128 * 179.97438 * 1 2 3 20 20 H 1.09008 * 109.47031 * 299.97437 * 1 2 3 21 21 H 1.08997 * 109.47352 * 59.97213 * 1 2 3 22 22 H 1.08998 * 109.61215 * 319.83829 * 4 2 1 23 23 H 1.08999 * 109.60970 * 80.18646 * 4 2 1 24 24 H 0.97003 * 119.68062 * 179.45957 * 7 5 4 25 25 H 1.09000 * 109.57460 * 192.04380 * 8 7 5 26 26 H 1.08995 * 109.58144 * 312.44046 * 8 7 5 27 27 H 1.09001 * 109.42804 * 38.48498 * 9 8 7 28 28 H 1.09004 * 109.42944 * 158.32401 * 9 8 7 29 29 H 0.96999 * 119.99569 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0409 -0.7222 1.2522 5 6 3.4711 -0.3035 1.5073 6 8 3.7294 0.4145 2.4499 7 7 4.4520 -0.7154 0.6986 8 6 4.1622 -1.5960 -0.4412 9 6 3.4373 -0.7852 -1.5205 10 7 2.0169 -0.6886 -1.1938 11 6 1.1065 -1.2657 -2.0382 12 1 0.1247 -0.8305 -2.1528 13 6 1.4455 -2.4101 -2.7470 14 7 2.4895 -3.1243 -2.3833 15 14 0.4198 -2.9363 -4.2169 16 1 0.9643 -2.3119 -5.4494 17 1 0.4663 -4.4147 -4.3491 18 1 -0.9862 -2.5007 -4.0209 19 1 -0.3634 -1.0277 -0.0005 20 1 -0.3633 0.5135 0.8903 21 1 -0.3634 0.5142 -0.8897 22 1 1.4230 -0.4516 2.1083 23 1 1.9978 -1.8001 1.0960 24 1 5.3646 -0.4336 0.8681 25 1 5.0950 -1.9898 -0.8449 26 1 3.5269 -2.4192 -0.1145 27 1 3.8666 0.2154 -1.5717 28 1 3.5548 -1.2791 -2.4851 29 1 2.7265 -3.9238 -2.8789 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575462830.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:06 Heat of formation + Delta-G solvation = -35.954845 kcal Electronic energy + Delta-G solvation = -13448.220641 eV Core-core repulsion = 11178.053120 eV Total energy + Delta-G solvation = -2270.167520 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.98345 -38.30103 -35.80046 -34.38695 -31.90366 -29.45429 -28.46249 -25.86078 -23.73577 -21.65053 -20.63050 -18.59807 -17.83998 -17.52521 -16.86201 -15.92298 -15.74976 -15.24845 -14.75008 -14.21638 -13.66765 -13.39953 -13.14811 -13.00056 -12.71692 -12.49821 -12.38826 -12.00832 -11.85407 -11.84301 -11.44684 -10.73939 -10.58015 -9.97837 -8.56583 -7.81822 -5.29558 1.53052 1.57470 1.62736 1.67613 2.53212 2.58102 3.35587 3.53467 3.75296 4.29909 4.43279 4.51377 4.59154 4.71482 4.76163 4.83487 4.97357 5.08912 5.34248 5.50756 5.51721 5.56690 5.81453 5.98173 6.35837 6.52774 7.24024 7.33270 7.91873 8.37208 9.23618 Molecular weight = 198.11amu Principal moments of inertia in cm(-1) A = 0.049721 B = 0.013260 C = 0.011179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.003256 B = 2111.151419 C = 2504.084229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.178 3.822 3 H 0.028 0.972 4 C -0.149 4.149 5 C 0.520 3.480 6 O -0.609 6.609 7 N -0.713 5.713 8 C 0.117 3.883 9 C 0.157 3.843 10 N -0.602 5.602 11 C -0.266 4.266 12 H 0.072 0.928 13 C -0.034 4.034 14 N -0.917 5.917 15 Si 0.956 3.044 16 H -0.291 1.291 17 H -0.298 1.298 18 H -0.275 1.275 19 H 0.053 0.947 20 H 0.071 0.929 21 H 0.053 0.947 22 H 0.098 0.902 23 H 0.081 0.919 24 H 0.399 0.601 25 H 0.090 0.910 26 H 0.069 0.931 27 H 0.011 0.989 28 H 0.077 0.923 29 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.423 2.024 1.734 2.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.071 3.929 3 H 0.046 0.954 4 C -0.191 4.191 5 C 0.308 3.692 6 O -0.493 6.493 7 N -0.363 5.363 8 C -0.008 4.008 9 C 0.031 3.969 10 N -0.325 5.325 11 C -0.396 4.396 12 H 0.089 0.911 13 C -0.231 4.231 14 N -0.562 5.562 15 Si 0.786 3.214 16 H -0.218 1.218 17 H -0.225 1.225 18 H -0.200 1.200 19 H 0.072 0.928 20 H 0.090 0.910 21 H 0.072 0.928 22 H 0.117 0.883 23 H 0.099 0.901 24 H 0.235 0.765 25 H 0.108 0.892 26 H 0.087 0.913 27 H 0.029 0.971 28 H 0.095 0.905 29 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 0.408 2.177 2.079 3.038 hybrid contribution 0.115 -0.549 -0.827 1.000 sum 0.523 1.628 1.252 2.119 Atomic orbital electron populations 1.21753 0.93350 1.01956 1.01299 1.20385 0.95087 0.93104 0.84369 0.95383 1.22624 0.91835 1.02818 1.01798 1.20895 0.89281 0.78496 0.80518 1.90628 1.85441 1.40583 1.32627 1.46082 1.10199 1.50276 1.29770 1.22208 1.00832 0.92289 0.85470 1.20967 0.83002 0.94745 0.98228 1.44167 1.02514 1.63197 1.22603 1.19517 0.97431 1.04596 1.18065 0.91071 1.25639 0.99377 0.95723 1.02385 1.70082 1.29757 1.16152 1.40247 0.85449 0.79086 0.76315 0.80544 1.21810 1.22534 1.19967 0.92770 0.91031 0.92764 0.88324 0.90082 0.76459 0.89162 0.91263 0.97066 0.90527 0.94028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.43 7.82 71.98 0.56 -3.87 15 2 C 0.18 7.07 3.22 45.16 0.15 7.21 15 3 H 0.03 1.15 7.96 -2.39 -0.02 1.13 15 4 C -0.15 -5.65 4.97 30.11 0.15 -5.50 15 5 C 0.52 20.67 7.13 87.99 0.63 21.29 15 6 O -0.61 -27.21 17.91 -3.03 -0.05 -27.26 15 7 N -0.71 -25.27 5.30 -462.74 -2.45 -27.72 15 8 C 0.12 4.42 5.94 86.37 0.51 4.93 15 9 C 0.16 6.76 5.31 86.53 0.46 7.22 15 10 N -0.60 -27.32 2.78 -678.88 -1.89 -29.20 15 11 C -0.27 -13.03 8.28 84.04 0.70 -12.34 15 12 H 0.07 3.44 6.05 -2.91 -0.02 3.42 15 13 C -0.03 -1.71 4.81 84.86 0.41 -1.30 15 14 N -0.92 -46.79 10.41 21.65 0.23 -46.57 15 15 Si 0.96 41.38 29.59 68.60 2.03 43.41 15 16 H -0.29 -12.65 7.11 99.48 0.71 -11.94 15 17 H -0.30 -13.16 7.11 99.48 0.71 -12.46 15 18 H -0.27 -11.58 7.11 99.48 0.71 -10.87 15 19 H 0.05 2.02 7.62 -2.38 -0.02 2.00 15 20 H 0.07 2.06 8.13 -2.38 -0.02 2.04 15 21 H 0.05 1.92 7.17 -2.39 -0.02 1.90 15 22 H 0.10 3.38 7.98 -2.39 -0.02 3.36 15 23 H 0.08 3.31 7.09 -2.39 -0.02 3.29 15 24 H 0.40 12.23 8.91 -92.71 -0.83 11.41 15 25 H 0.09 3.01 8.14 -2.39 -0.02 2.99 15 26 H 0.07 3.03 6.62 -2.39 -0.02 3.01 15 27 H 0.01 0.48 8.10 -2.39 -0.02 0.46 15 28 H 0.08 3.66 5.95 -2.39 -0.01 3.65 15 29 H 0.25 12.60 8.31 -92.71 -0.77 11.83 15 Total: -1.00 -56.22 232.82 1.75 -54.46 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: 0.33 Total: 15.22 kcal Atomic # 6 Polarization: 14.10 SS G_CDS: 3.56 Total: 17.66 kcal Atomic # 7 Polarization: -99.38 SS G_CDS: -4.11 Total: -103.49 kcal Atomic # 8 Polarization: -27.21 SS G_CDS: -0.05 Total: -27.26 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.41 kcal Total: -56.22 1.75 -54.46 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575462830.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.508 kcal (2) G-P(sol) polarization free energy of solvation -56.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds