Wall clock time and date at job start Sun Mar 29 2020 21:25:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.37106 * 120.00030 * 2 1 4 4 H 1.07995 * 119.99952 * 201.56768 * 3 2 1 5 5 C 1.38951 * 119.99906 * 21.57365 * 3 2 1 6 6 N 1.31416 * 119.99991 * 14.83504 * 5 3 2 7 7 Si 1.86792 * 120.00057 * 194.83450 * 5 3 2 8 8 H 1.48504 * 109.47197 * 0.02562 * 7 5 3 9 9 H 1.48508 * 109.47030 * 119.99863 * 7 5 3 10 10 H 1.48496 * 109.47427 * 239.99815 * 7 5 3 11 11 C 1.34772 * 120.00173 * 179.97438 * 2 1 3 12 12 O 1.21291 * 120.00480 * 179.97438 * 11 2 1 13 13 C 1.50701 * 120.00001 * 0.02562 * 11 2 1 14 14 H 1.09005 * 112.36808 * 50.06438 * 13 11 2 15 15 C 1.52875 * 113.05005 * 280.62759 * 13 11 2 16 16 C 1.50572 * 82.45289 * 244.53934 * 15 13 11 17 17 O 1.21280 * 131.84591 * 179.97438 * 16 15 13 18 18 N 1.34610 * 96.30239 * 0.02562 * 16 15 13 19 19 H 1.09001 * 109.46743 * 270.77669 * 1 2 3 20 20 H 1.09001 * 109.46780 * 30.77448 * 1 2 3 21 21 H 1.08995 * 109.46779 * 150.77532 * 1 2 3 22 22 H 0.96994 * 120.00096 * 180.02562 * 6 5 3 23 23 H 1.09000 * 114.37996 * 357.93761 * 15 13 11 24 24 H 1.09004 * 114.37982 * 131.11393 * 15 13 11 25 25 H 0.96998 * 134.65736 * 180.26091 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1506 1.1874 0.0000 4 1 3.1738 1.2201 -0.3438 5 6 1.5288 2.3486 0.4425 6 7 0.4082 2.2747 1.1249 7 14 2.2858 4.0145 0.0673 8 1 3.5371 3.8259 -0.7099 9 1 1.3282 4.8259 -0.7266 10 1 2.5935 4.7162 1.3392 11 6 2.1389 -1.1671 0.0005 12 8 3.3518 -1.1672 0.0001 13 6 1.3855 -2.4723 0.0005 14 1 0.6180 -2.5082 -0.7727 15 6 0.8610 -2.8606 1.3830 16 6 1.8209 -4.0072 1.2064 17 8 2.1006 -4.9457 1.9217 18 7 2.2656 -3.6415 -0.0104 19 1 -0.3633 0.0139 1.0276 20 1 -0.3633 0.8830 -0.5258 21 1 -0.3633 -0.8968 -0.5017 22 1 -0.0260 3.0853 1.4335 23 1 1.1313 -2.1659 2.1782 24 1 -0.1894 -3.1513 1.4004 25 1 2.9059 -4.0073 -0.6406 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597012389.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:25:02 Heat of formation + Delta-G solvation = -53.049124 kcal Electronic energy + Delta-G solvation = -12642.365927 eV Core-core repulsion = 10235.624048 eV Total energy + Delta-G solvation = -2406.741878 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 198.079 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.21968 -39.76766 -37.42661 -36.55347 -33.65828 -30.15755 -28.34754 -27.14509 -25.35561 -21.31899 -20.68884 -18.93542 -18.40753 -18.18406 -17.31699 -16.82172 -16.02996 -15.63383 -15.53791 -14.31894 -14.03159 -13.86428 -13.29152 -13.10098 -13.06446 -12.80519 -12.61626 -12.24143 -12.11038 -11.22717 -11.00357 -10.92987 -9.96488 -9.68611 -8.34449 -5.97337 1.35783 1.41882 1.44967 1.56643 1.88907 2.21287 2.40557 2.89886 3.06478 3.09841 3.70324 3.95082 4.13291 4.67467 4.76976 4.86409 5.13314 5.19521 5.46948 5.49131 5.93990 6.08930 6.46999 7.15346 7.25223 7.45805 7.99513 8.66649 Molecular weight = 198.08amu Principal moments of inertia in cm(-1) A = 0.070097 B = 0.009649 C = 0.009099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 399.352573 B = 2901.300544 C = 3076.574164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.111 3.889 2 N -0.448 5.448 3 C -0.347 4.347 4 H 0.068 0.932 5 C 0.005 3.995 6 N -0.886 5.886 7 Si 0.984 3.016 8 H -0.277 1.277 9 H -0.264 1.264 10 H -0.278 1.278 11 C 0.422 3.578 12 O -0.635 6.635 13 C 0.122 3.878 14 H 0.153 0.847 15 C -0.140 4.140 16 C 0.516 3.484 17 O -0.570 6.570 18 N -0.709 5.709 19 H 0.056 0.944 20 H 0.053 0.947 21 H 0.082 0.918 22 H 0.275 0.725 23 H 0.110 0.890 24 H 0.175 0.825 25 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.350 -3.829 -3.226 8.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.166 5.166 3 C -0.476 4.476 4 H 0.086 0.914 5 C -0.198 4.198 6 N -0.524 5.524 7 Si 0.808 3.192 8 H -0.202 1.202 9 H -0.188 1.188 10 H -0.203 1.203 11 C 0.211 3.789 12 O -0.523 6.523 13 C 0.013 3.987 14 H 0.170 0.830 15 C -0.180 4.180 16 C 0.303 3.697 17 O -0.449 6.449 18 N -0.368 5.368 19 H 0.075 0.925 20 H 0.071 0.929 21 H 0.100 0.900 22 H 0.085 0.915 23 H 0.128 0.872 24 H 0.192 0.808 25 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -5.754 -4.186 -2.815 7.652 hybrid contribution 1.024 0.872 -0.397 1.403 sum -4.729 -3.314 -3.212 6.608 Atomic orbital electron populations 1.21656 0.78470 1.01052 1.01992 1.43844 1.07200 1.04168 1.61344 1.19604 0.98883 0.85579 1.43506 0.91396 1.25968 0.96932 1.02511 0.94389 1.70046 1.18767 1.30481 1.33087 0.85016 0.78362 0.77619 0.78175 1.20197 1.18848 1.20327 1.20967 0.87981 0.86210 0.83779 1.90518 1.16259 1.87743 1.57756 1.22033 0.91405 0.83735 1.01523 0.82969 1.23559 1.03584 0.94810 0.96058 1.22437 0.81804 0.85137 0.80336 1.90664 1.66168 1.35052 1.53021 1.47595 1.43330 1.25528 1.20339 0.92535 0.92851 0.89990 0.91488 0.87190 0.80778 0.73448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.14 8.38 127.77 1.07 5.21 15 2 N -0.45 -21.05 3.02 -658.89 -1.99 -23.04 15 3 C -0.35 -18.80 9.29 84.04 0.78 -18.02 15 4 H 0.07 4.02 7.41 -2.91 -0.02 4.00 15 5 C 0.01 0.26 5.03 84.93 0.43 0.69 15 6 N -0.89 -43.71 10.76 21.66 0.23 -43.48 15 7 Si 0.98 40.62 29.58 68.60 2.03 42.65 15 8 H -0.28 -11.77 7.11 99.48 0.71 -11.06 15 9 H -0.26 -10.17 7.11 99.48 0.71 -9.46 15 10 H -0.28 -11.28 7.11 99.48 0.71 -10.58 15 11 C 0.42 18.98 7.10 87.66 0.62 19.60 15 12 O -0.63 -34.93 16.32 -3.06 -0.05 -34.98 15 13 C 0.12 3.72 3.56 36.28 0.13 3.85 15 14 H 0.15 3.31 6.99 -2.38 -0.02 3.29 15 15 C -0.14 -3.76 7.94 29.77 0.24 -3.52 15 16 C 0.52 17.44 9.38 79.69 0.75 18.18 15 17 O -0.57 -23.32 18.03 -3.03 -0.05 -23.37 15 18 N -0.71 -22.37 7.07 -517.85 -3.66 -26.03 15 19 H 0.06 2.16 7.63 -2.39 -0.02 2.15 15 20 H 0.05 2.18 7.00 -2.39 -0.02 2.16 15 21 H 0.08 2.15 6.20 -2.39 -0.01 2.13 15 22 H 0.28 12.71 8.31 -92.71 -0.77 11.94 15 23 H 0.11 3.36 8.00 -2.39 -0.02 3.35 15 24 H 0.17 2.89 8.14 -2.38 -0.02 2.87 15 25 H 0.42 12.18 8.96 -92.71 -0.83 11.35 15 Total: -1.00 -71.03 225.40 0.91 -70.12 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: 0.39 Total: 12.13 kcal Atomic # 6 Polarization: 21.98 SS G_CDS: 4.01 Total: 25.99 kcal Atomic # 7 Polarization: -87.13 SS G_CDS: -5.42 Total: -92.55 kcal Atomic # 8 Polarization: -58.25 SS G_CDS: -0.10 Total: -58.35 kcal Atomic # 14 Polarization: 40.62 SS G_CDS: 2.03 Total: 42.65 kcal Total: -71.03 0.91 -70.12 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597012389.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.071 kcal (2) G-P(sol) polarization free energy of solvation -71.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds