Wall clock time and date at job start Sun Mar 29 2020 21:39:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46501 * 109.47350 * 2 1 4 4 C 1.36937 * 120.00524 * 265.61253 * 3 2 1 5 5 H 1.07994 * 120.00344 * 146.31881 * 4 3 2 6 6 C 1.38811 * 119.99623 * 326.32098 * 4 3 2 7 7 N 1.31622 * 120.00350 * 337.51582 * 6 4 3 8 8 Si 1.86794 * 119.99963 * 157.51306 * 6 4 3 9 9 H 1.48505 * 109.47190 * 89.99887 * 8 6 4 10 10 H 1.48503 * 109.47520 * 209.99713 * 8 6 4 11 11 H 1.48497 * 109.47342 * 329.99956 * 8 6 4 12 12 C 1.46505 * 119.99730 * 85.60668 * 3 2 1 13 13 H 1.09001 * 110.43368 * 359.30604 * 12 3 2 14 14 C 1.54629 * 110.48128 * 121.84160 * 12 3 2 15 15 C 1.54701 * 101.66523 * 143.39594 * 14 12 3 16 16 N 1.46762 * 105.53330 * 334.74156 * 15 14 12 17 17 C 1.34418 * 111.30117 * 16.92408 * 16 15 14 18 18 O 1.21284 * 124.94246 * 179.56081 * 17 16 15 19 19 H 1.08999 * 109.47588 * 179.97438 * 1 2 3 20 20 H 1.09000 * 109.47069 * 59.99830 * 1 2 3 21 21 H 1.09000 * 109.47613 * 299.99855 * 1 2 3 22 22 H 1.09000 * 109.47069 * 120.00169 * 2 1 3 23 23 H 1.09002 * 109.47133 * 240.00328 * 2 1 3 24 24 H 0.96992 * 120.00434 * 180.02562 * 7 6 4 25 25 H 1.09001 * 110.97096 * 261.59175 * 14 12 3 26 26 H 1.08994 * 110.97406 * 25.36409 * 14 12 3 27 27 H 1.08996 * 110.29435 * 215.67763 * 15 14 12 28 28 H 1.09004 * 110.13496 * 93.71822 * 15 14 12 29 29 H 0.96994 * 124.34519 * 196.94548 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3321 1.9966 -1.1824 5 1 2.1650 3.0570 -1.3003 6 6 2.8651 1.2573 -2.2294 7 7 3.4747 0.1164 -1.9861 8 14 2.7173 1.8817 -3.9837 9 1 3.8943 2.7267 -4.3093 10 1 2.6631 0.7278 -4.9170 11 1 1.4771 2.6869 -4.1197 12 6 2.1709 2.1042 1.2651 13 1 1.8671 1.4752 2.1019 14 6 3.6322 2.5764 1.4456 15 6 3.4349 3.9491 2.1311 16 7 2.0976 4.4005 1.7292 17 6 1.3642 3.3837 1.2443 18 8 0.2217 3.4783 0.8484 19 1 -0.3634 -1.0276 -0.0005 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3634 0.5138 0.8900 22 1 1.8933 -0.5139 0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 3.8474 -0.4000 -2.7177 25 1 4.1864 1.8929 2.0889 26 1 4.1274 2.6901 0.4813 27 1 4.1906 4.6554 1.7874 28 1 3.4860 3.8384 3.2143 29 1 1.7834 5.3152 1.8036 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619656803.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:40 Heat of formation + Delta-G solvation = -14.432571 kcal Electronic energy + Delta-G solvation = -13307.566544 eV Core-core repulsion = 11038.332300 eV Total energy + Delta-G solvation = -2269.234244 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.46757 -35.73058 -35.13316 -31.50154 -30.31896 -28.25562 -26.17282 -23.81464 -21.34543 -20.64564 -19.35344 -16.77554 -16.29870 -15.57895 -14.80984 -14.22695 -13.58806 -13.40462 -12.91333 -12.82280 -12.23714 -11.74940 -11.58037 -11.49272 -11.09316 -10.79412 -10.58736 -10.40321 -10.00097 -9.80168 -9.55817 -9.10184 -8.49974 -8.41857 -6.61139 -5.80755 -3.32873 3.36343 3.43466 3.44680 3.52906 4.01003 4.49251 5.18478 5.23282 5.37847 5.55252 5.67685 5.89577 6.06870 6.11671 6.41676 6.59075 6.66337 6.79933 6.95219 7.03622 7.36640 7.49015 7.65336 7.77965 7.83589 8.48521 9.06765 9.17018 9.78683 10.34135 11.20109 Molecular weight = 198.11amu Principal moments of inertia in cm(-1) A = 0.032650 B = 0.014674 C = 0.013129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.372566 B = 1907.666106 C = 2132.117289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.139 3.861 3 N -0.560 5.560 4 C -0.248 4.248 5 H 0.057 0.943 6 C 0.011 3.989 7 N -0.887 5.887 8 Si 0.896 3.104 9 H -0.286 1.286 10 H -0.288 1.288 11 H -0.278 1.278 12 C 0.143 3.857 13 H 0.085 0.915 14 C -0.144 4.144 15 C 0.106 3.894 16 N -0.744 5.744 17 C 0.508 3.492 18 O -0.533 6.533 19 H 0.032 0.968 20 H 0.049 0.951 21 H 0.035 0.965 22 H 0.022 0.978 23 H 0.103 0.897 24 H 0.255 0.745 25 H 0.074 0.926 26 H 0.098 0.902 27 H 0.066 0.934 28 H 0.058 0.942 29 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.390 3.536 7.249 8.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.014 3.986 3 N -0.280 5.280 4 C -0.378 4.378 5 H 0.075 0.925 6 C -0.189 4.189 7 N -0.530 5.530 8 Si 0.726 3.274 9 H -0.213 1.213 10 H -0.214 1.214 11 H -0.203 1.203 12 C 0.031 3.969 13 H 0.103 0.897 14 C -0.183 4.183 15 C -0.019 4.019 16 N -0.401 5.401 17 C 0.293 3.707 18 O -0.408 6.408 19 H 0.051 0.949 20 H 0.068 0.932 21 H 0.054 0.946 22 H 0.040 0.960 23 H 0.120 0.880 24 H 0.065 0.935 25 H 0.092 0.908 26 H 0.117 0.883 27 H 0.085 0.915 28 H 0.076 0.924 29 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 0.893 3.281 6.887 7.680 hybrid contribution -0.130 0.838 -0.853 1.203 sum 0.764 4.119 6.033 7.345 Atomic orbital electron populations 1.22310 1.00514 0.98352 1.01033 1.21057 0.90064 0.85590 1.01938 1.43664 1.73337 1.11221 0.99748 1.18902 1.35507 0.93937 0.89456 0.92491 1.25016 0.97033 0.97784 0.99030 1.69985 1.36324 1.15753 1.30895 0.86400 0.78202 0.78009 0.84837 1.21311 1.21371 1.20339 1.20989 0.92573 0.91319 0.92020 0.89726 1.23106 0.99189 0.93734 1.02313 1.22017 0.83973 0.97595 0.98315 1.46256 1.16263 1.11081 1.66531 1.22245 0.86231 0.87937 0.74329 1.90623 1.17927 1.85729 1.46538 0.94882 0.93185 0.94606 0.96004 0.87984 0.93513 0.90773 0.88338 0.91545 0.92418 0.76780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.59 10.24 37.15 0.38 -3.21 15 2 C 0.14 3.34 5.93 -4.04 -0.02 3.32 15 3 N -0.56 -14.04 2.48 -165.68 -0.41 -14.45 15 4 C -0.25 -6.83 7.98 -15.06 -0.12 -6.95 15 5 H 0.06 1.64 7.52 -52.49 -0.39 1.25 15 6 C 0.01 0.30 4.92 -17.43 -0.09 0.22 15 7 N -0.89 -24.87 11.32 55.49 0.63 -24.24 15 8 Si 0.90 21.91 29.61 -169.99 -5.03 16.87 15 9 H -0.29 -6.90 7.11 56.52 0.40 -6.50 15 10 H -0.29 -7.00 7.11 56.52 0.40 -6.60 15 11 H -0.28 -6.93 7.11 56.52 0.40 -6.53 15 12 C 0.14 3.03 3.46 -67.94 -0.23 2.79 15 13 H 0.08 1.65 7.92 -51.93 -0.41 1.24 15 14 C -0.14 -2.55 6.77 -24.98 -0.17 -2.72 15 15 C 0.11 1.50 7.79 -3.00 -0.02 1.48 15 16 N -0.74 -12.46 6.24 -59.08 -0.37 -12.83 15 17 C 0.51 10.96 7.18 -10.86 -0.08 10.88 15 18 O -0.53 -13.60 18.02 5.55 0.10 -13.50 15 19 H 0.03 0.63 8.14 -51.93 -0.42 0.21 15 20 H 0.05 1.20 8.14 -51.93 -0.42 0.77 15 21 H 0.03 0.77 8.14 -51.93 -0.42 0.35 15 22 H 0.02 0.48 8.04 -51.93 -0.42 0.07 15 23 H 0.10 2.73 5.32 -51.93 -0.28 2.46 15 24 H 0.25 6.91 8.31 -40.82 -0.34 6.57 15 25 H 0.07 1.16 8.14 -51.93 -0.42 0.74 15 26 H 0.10 2.07 7.13 -51.93 -0.37 1.70 15 27 H 0.07 0.82 8.14 -51.93 -0.42 0.40 15 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 15 29 H 0.40 5.70 8.96 -40.82 -0.37 5.34 15 LS Contribution 245.31 15.07 3.70 3.70 Total: -1.00 -31.30 245.31 -5.65 -36.95 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -3.91 Total: 1.70 kcal Atomic # 6 Polarization: 6.15 SS G_CDS: -0.36 Total: 5.80 kcal Atomic # 7 Polarization: -51.37 SS G_CDS: -0.15 Total: -51.52 kcal Atomic # 8 Polarization: -13.60 SS G_CDS: 0.10 Total: -13.50 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.03 Total: 16.87 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -31.30 -5.65 -36.95 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619656803.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.521 kcal (2) G-P(sol) polarization free energy of solvation -31.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds