Wall clock time and date at job start Sun Mar 29 2020 21:39:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46501 * 109.47350 * 2 1 4 4 C 1.36937 * 120.00524 * 265.61253 * 3 2 1 5 5 H 1.07994 * 120.00344 * 146.31881 * 4 3 2 6 6 C 1.38811 * 119.99623 * 326.32098 * 4 3 2 7 7 N 1.31622 * 120.00350 * 337.51582 * 6 4 3 8 8 Si 1.86794 * 119.99963 * 157.51306 * 6 4 3 9 9 H 1.48505 * 109.47190 * 89.99887 * 8 6 4 10 10 H 1.48503 * 109.47520 * 209.99713 * 8 6 4 11 11 H 1.48497 * 109.47342 * 329.99956 * 8 6 4 12 12 C 1.46505 * 119.99730 * 85.60668 * 3 2 1 13 13 H 1.09001 * 110.43368 * 359.30604 * 12 3 2 14 14 C 1.54629 * 110.48128 * 121.84160 * 12 3 2 15 15 C 1.54701 * 101.66523 * 143.39594 * 14 12 3 16 16 N 1.46762 * 105.53330 * 334.74156 * 15 14 12 17 17 C 1.34418 * 111.30117 * 16.92408 * 16 15 14 18 18 O 1.21284 * 124.94246 * 179.56081 * 17 16 15 19 19 H 1.08999 * 109.47588 * 179.97438 * 1 2 3 20 20 H 1.09000 * 109.47069 * 59.99830 * 1 2 3 21 21 H 1.09000 * 109.47613 * 299.99855 * 1 2 3 22 22 H 1.09000 * 109.47069 * 120.00169 * 2 1 3 23 23 H 1.09002 * 109.47133 * 240.00328 * 2 1 3 24 24 H 0.96992 * 120.00434 * 180.02562 * 7 6 4 25 25 H 1.09001 * 110.97096 * 261.59175 * 14 12 3 26 26 H 1.08994 * 110.97406 * 25.36409 * 14 12 3 27 27 H 1.08996 * 110.29435 * 215.67763 * 15 14 12 28 28 H 1.09004 * 110.13496 * 93.71822 * 15 14 12 29 29 H 0.96994 * 124.34519 * 196.94548 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3321 1.9966 -1.1824 5 1 2.1650 3.0570 -1.3003 6 6 2.8651 1.2573 -2.2294 7 7 3.4747 0.1164 -1.9861 8 14 2.7173 1.8817 -3.9837 9 1 3.8943 2.7267 -4.3093 10 1 2.6631 0.7278 -4.9170 11 1 1.4771 2.6869 -4.1197 12 6 2.1709 2.1042 1.2651 13 1 1.8671 1.4752 2.1019 14 6 3.6322 2.5764 1.4456 15 6 3.4349 3.9491 2.1311 16 7 2.0976 4.4005 1.7292 17 6 1.3642 3.3837 1.2443 18 8 0.2217 3.4783 0.8484 19 1 -0.3634 -1.0276 -0.0005 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3634 0.5138 0.8900 22 1 1.8933 -0.5139 0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 3.8474 -0.4000 -2.7177 25 1 4.1864 1.8929 2.0889 26 1 4.1274 2.6901 0.4813 27 1 4.1906 4.6554 1.7874 28 1 3.4860 3.8384 3.2143 29 1 1.7834 5.3152 1.8036 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619656803.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:40 Heat of formation + Delta-G solvation = -37.347974 kcal Electronic energy + Delta-G solvation = -13308.560231 eV Core-core repulsion = 11038.332300 eV Total energy + Delta-G solvation = -2270.227931 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.05985 -37.54914 -36.81457 -33.50208 -31.99213 -29.93689 -27.84942 -25.72508 -22.93821 -22.30746 -21.07485 -18.49913 -18.06877 -17.18455 -16.69586 -16.05250 -15.41506 -15.00076 -14.54360 -14.41789 -14.08195 -13.46059 -13.30753 -13.18473 -12.80354 -12.66927 -12.48946 -12.10768 -11.87618 -11.62838 -11.48685 -10.87075 -10.42192 -9.89708 -8.59117 -7.86126 -5.41052 1.40523 1.45127 1.54832 1.77440 2.48174 2.65229 3.20141 3.60259 3.88520 4.04215 4.35510 4.40590 4.55292 4.69647 4.83821 4.93601 4.96478 5.12126 5.25328 5.46095 5.54779 5.65522 5.85761 6.08684 6.19804 6.44057 7.13120 7.50387 7.81737 8.32167 9.11097 Molecular weight = 198.11amu Principal moments of inertia in cm(-1) A = 0.032650 B = 0.014674 C = 0.013129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.372566 B = 1907.666106 C = 2132.117289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.136 3.864 3 N -0.577 5.577 4 C -0.251 4.251 5 H 0.035 0.965 6 C -0.028 4.028 7 N -0.906 5.906 8 Si 0.947 3.053 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.289 1.289 12 C 0.130 3.870 13 H 0.101 0.899 14 C -0.136 4.136 15 C 0.112 3.888 16 N -0.728 5.728 17 C 0.498 3.502 18 O -0.585 6.585 19 H 0.062 0.938 20 H 0.021 0.979 21 H 0.035 0.965 22 H 0.039 0.961 23 H 0.076 0.924 24 H 0.254 0.746 25 H 0.099 0.901 26 H 0.062 0.938 27 H 0.092 0.908 28 H 0.100 0.900 29 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.210 4.084 8.549 9.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.011 3.989 3 N -0.297 5.297 4 C -0.381 4.381 5 H 0.053 0.947 6 C -0.226 4.226 7 N -0.550 5.550 8 Si 0.775 3.225 9 H -0.204 1.204 10 H -0.210 1.210 11 H -0.215 1.215 12 C 0.019 3.981 13 H 0.119 0.881 14 C -0.176 4.176 15 C -0.012 4.012 16 N -0.384 5.384 17 C 0.284 3.716 18 O -0.464 6.464 19 H 0.081 0.919 20 H 0.040 0.960 21 H 0.055 0.945 22 H 0.058 0.942 23 H 0.093 0.907 24 H 0.064 0.936 25 H 0.117 0.883 26 H 0.081 0.919 27 H 0.111 0.889 28 H 0.118 0.882 29 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 1.762 3.867 8.226 9.258 hybrid contribution -0.379 0.694 -1.176 1.417 sum 1.382 4.561 7.050 8.510 Atomic orbital electron populations 1.22151 0.99256 0.99827 0.99584 1.21018 0.91034 0.85465 1.01431 1.43776 1.73782 1.11596 1.00538 1.18803 1.35070 0.93125 0.91120 0.94693 1.25521 0.97289 0.98241 1.01525 1.70062 1.37037 1.16441 1.31413 0.85621 0.77699 0.77502 0.81679 1.20444 1.20967 1.21481 1.21290 0.94700 0.91300 0.90792 0.88086 1.22980 0.96482 0.96548 1.01560 1.22240 0.82801 0.95771 1.00360 1.46181 1.16703 1.10948 1.64584 1.22323 0.85769 0.89248 0.74302 1.90590 1.20054 1.86611 1.49146 0.91907 0.95976 0.94535 0.94237 0.90651 0.93642 0.88281 0.91889 0.88931 0.88223 0.75167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.53 10.24 71.98 0.74 -5.79 15 2 C 0.14 6.52 5.93 86.38 0.51 7.03 15 3 N -0.58 -28.92 2.48 -678.08 -1.68 -30.60 15 4 C -0.25 -13.98 7.98 84.03 0.67 -13.31 15 5 H 0.04 2.08 7.52 -2.91 -0.02 2.05 15 6 C -0.03 -1.55 4.92 84.86 0.42 -1.14 15 7 N -0.91 -51.13 11.32 21.65 0.25 -50.89 15 8 Si 0.95 45.48 29.61 68.60 2.03 47.52 15 9 H -0.28 -12.90 7.11 99.48 0.71 -12.19 15 10 H -0.28 -13.37 7.11 99.48 0.71 -12.66 15 11 H -0.29 -14.25 7.11 99.48 0.71 -13.54 15 12 C 0.13 5.34 3.46 44.98 0.16 5.49 15 13 H 0.10 3.74 7.92 -2.39 -0.02 3.72 15 14 C -0.14 -4.53 6.77 31.73 0.21 -4.31 15 15 C 0.11 2.70 7.79 86.91 0.68 3.38 15 16 N -0.73 -22.54 6.24 -459.43 -2.87 -25.40 15 17 C 0.50 21.07 7.18 87.90 0.63 21.70 15 18 O -0.58 -30.07 18.02 -3.04 -0.05 -30.13 15 19 H 0.06 2.32 8.14 -2.39 -0.02 2.30 15 20 H 0.02 1.04 8.14 -2.39 -0.02 1.02 15 21 H 0.04 1.56 8.14 -2.39 -0.02 1.54 15 22 H 0.04 1.71 8.04 -2.39 -0.02 1.70 15 23 H 0.08 4.07 5.32 -2.39 -0.01 4.06 15 24 H 0.25 13.85 8.31 -92.71 -0.77 13.07 15 25 H 0.10 2.78 8.14 -2.39 -0.02 2.76 15 26 H 0.06 2.58 7.13 -2.39 -0.02 2.56 15 27 H 0.09 1.86 8.14 -2.39 -0.02 1.84 15 28 H 0.10 1.73 8.14 -2.38 -0.02 1.71 15 29 H 0.41 10.73 8.96 -92.71 -0.83 9.90 15 Total: -1.00 -68.60 245.31 2.00 -66.60 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: 0.31 Total: 9.84 kcal Atomic # 6 Polarization: 9.04 SS G_CDS: 4.02 Total: 13.06 kcal Atomic # 7 Polarization: -102.59 SS G_CDS: -4.30 Total: -106.89 kcal Atomic # 8 Polarization: -30.07 SS G_CDS: -0.05 Total: -30.13 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.52 kcal Total: -68.60 2.00 -66.60 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619656803.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.249 kcal (2) G-P(sol) polarization free energy of solvation -68.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds