Wall clock time and date at job start Sun Mar 29 2020 22:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30675 * 1 3 3 Si 1.86804 * 119.99453 * 2 1 4 4 H 1.48503 * 109.46823 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47318 * 299.99769 * 3 2 1 6 6 H 1.48501 * 109.46975 * 60.00431 * 3 2 1 7 7 C 1.40048 * 120.00320 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99531 * 180.02562 * 7 2 1 9 9 C 1.46370 * 120.00161 * 359.97438 * 7 2 1 10 10 O 1.21694 * 119.99619 * 0.02562 * 9 7 2 11 11 N 1.34774 * 120.00366 * 180.02562 * 9 7 2 12 12 O 1.41596 * 120.00327 * 180.02562 * 11 9 7 13 13 C 1.42898 * 114.00162 * 179.97438 * 12 11 9 14 14 C 1.52997 * 109.47319 * 180.02562 * 13 12 11 15 15 C 1.53785 * 113.61570 * 274.13969 * 14 13 12 16 16 C 1.53956 * 87.02052 * 220.04627 * 15 14 13 17 17 C 1.53777 * 87.11087 * 25.36196 * 16 15 14 18 18 H 0.96993 * 120.00549 * 0.02562 * 1 2 3 19 19 H 0.96996 * 119.99938 * 0.02562 * 11 9 7 20 20 H 1.09002 * 109.47259 * 300.00377 * 13 12 11 21 21 H 1.09001 * 109.47074 * 60.00398 * 13 12 11 22 22 H 1.09001 * 112.85054 * 45.33390 * 14 13 12 23 23 H 1.09000 * 113.61195 * 334.56762 * 15 14 13 24 24 H 1.09001 * 113.61520 * 105.46896 * 15 14 13 25 25 H 1.09005 * 113.53676 * 270.80967 * 16 15 14 26 26 H 1.08993 * 113.66514 * 139.93360 * 16 15 14 27 27 H 1.09011 * 113.61618 * 220.09268 * 17 16 15 28 28 H 1.09000 * 113.69499 * 89.19666 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2406 1.6179 0.0000 4 1 3.7007 1.3466 0.0006 5 1 1.8819 2.3965 -1.2125 6 1 1.8819 2.3965 1.2126 7 6 2.0071 -1.2128 -0.0005 8 1 3.0871 -1.2127 -0.0001 9 6 1.2753 -2.4805 -0.0005 10 8 0.0584 -2.4805 -0.0005 11 7 1.9492 -3.6476 -0.0005 12 8 1.2413 -4.8739 -0.0011 13 6 2.0813 -6.0300 -0.0016 14 6 1.2142 -7.2905 -0.0028 15 6 0.7807 -7.7414 1.4021 16 6 1.0332 -9.1846 0.9292 17 6 2.0238 -8.5952 -0.0886 18 1 -0.4850 0.8399 -0.0004 19 1 2.9192 -3.6476 -0.0002 20 1 2.7106 -6.0215 -0.8916 21 1 2.7105 -6.0223 0.8884 22 1 0.3928 -7.2385 -0.7175 23 1 1.4569 -7.4165 2.1929 24 1 -0.2652 -7.5307 1.6250 25 1 0.1614 -9.6511 0.4703 26 1 1.5048 -9.8157 1.6824 27 1 1.9799 -9.0726 -1.0677 28 1 3.0409 -8.5037 0.2924 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688532764.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:09 Heat of formation + Delta-G solvation = -23.229246 kcal Electronic energy + Delta-G solvation = -12347.997488 eV Core-core repulsion = 9980.663129 eV Total energy + Delta-G solvation = -2367.334359 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 199.100 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.91440 -37.14572 -35.39636 -32.51049 -30.65324 -27.89089 -25.87806 -25.54935 -22.55115 -20.27240 -19.29995 -17.56271 -16.37936 -15.69023 -15.37768 -14.80274 -14.46865 -13.87111 -13.11591 -12.57322 -12.45101 -12.33555 -11.81410 -11.50892 -11.27221 -11.08079 -10.58712 -10.52649 -10.43001 -10.32120 -10.22084 -9.83424 -8.89826 -7.66513 -7.32792 -6.25198 -4.72502 3.11871 3.13977 3.22398 3.36159 4.14364 4.56471 4.61710 4.65299 4.79100 4.88876 5.48912 5.53468 5.66545 5.69565 5.72776 5.78569 5.81243 5.90308 6.02447 6.13517 6.29291 6.53997 7.37606 7.76442 8.20220 8.38049 8.93949 9.42562 10.56877 10.74689 Molecular weight = 199.10amu Principal moments of inertia in cm(-1) A = 0.102416 B = 0.006255 C = 0.006045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 273.329674 B = 4474.994218 C = 4631.101721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.086 3.914 3 Si 0.918 3.082 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.536 4.536 8 H 0.073 0.927 9 C 0.566 3.434 10 O -0.561 6.561 11 N -0.629 5.629 12 O -0.167 6.167 13 C 0.047 3.953 14 C -0.104 4.104 15 C -0.134 4.134 16 C -0.142 4.142 17 C -0.131 4.131 18 H 0.271 0.729 19 H 0.384 0.616 20 H 0.048 0.952 21 H 0.048 0.952 22 H 0.098 0.902 23 H 0.081 0.919 24 H 0.070 0.930 25 H 0.079 0.921 26 H 0.066 0.934 27 H 0.068 0.932 28 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.237 -11.614 0.809 13.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.134 4.134 3 Si 0.742 3.258 4 H -0.187 1.187 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.574 4.574 8 H 0.091 0.909 9 C 0.370 3.630 10 O -0.440 6.440 11 N -0.338 5.338 12 O -0.169 6.169 13 C -0.031 4.031 14 C -0.124 4.124 15 C -0.172 4.172 16 C -0.180 4.180 17 C -0.169 4.169 18 H 0.081 0.919 19 H 0.221 0.779 20 H 0.066 0.934 21 H 0.066 0.934 22 H 0.117 0.883 23 H 0.099 0.901 24 H 0.089 0.911 25 H 0.098 0.902 26 H 0.085 0.915 27 H 0.087 0.913 28 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.899 -11.531 0.810 12.555 hybrid contribution 1.153 0.520 -0.025 1.265 sum 6.052 -11.011 0.786 12.590 Atomic orbital electron populations 1.70038 1.07098 1.27529 1.34742 1.25714 0.94753 1.00312 0.92614 0.86159 0.80285 0.81091 0.78298 1.18669 1.20029 1.20034 1.20637 0.93620 0.87591 1.55518 0.90856 1.18604 0.87838 0.79902 0.76660 1.90620 1.13990 1.85015 1.54378 1.48575 1.05894 0.94271 1.85083 1.90509 1.22961 1.06163 1.97232 1.22727 0.94358 0.86227 0.99814 1.22488 0.99090 0.91913 0.98905 1.22987 1.02262 0.95312 0.96600 1.22840 0.99469 0.96759 0.98914 1.22896 0.98506 0.95727 0.99742 0.91851 0.77921 0.93395 0.93362 0.88332 0.90065 0.91130 0.90219 0.91529 0.91323 0.90056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.20 11.83 55.55 0.66 -22.55 15 2 C 0.09 2.41 5.50 -17.37 -0.10 2.31 15 3 Si 0.92 19.96 29.56 -169.99 -5.02 14.93 15 4 H -0.26 -5.46 7.11 56.52 0.40 -5.06 15 5 H -0.27 -5.85 7.11 56.52 0.40 -5.45 15 6 H -0.27 -5.85 7.11 56.52 0.40 -5.45 15 7 C -0.54 -15.27 9.54 -35.63 -0.34 -15.61 15 8 H 0.07 1.87 7.85 -52.49 -0.41 1.45 15 9 C 0.57 17.09 7.89 -12.99 -0.10 16.99 15 10 O -0.56 -19.51 15.43 -12.94 -0.20 -19.71 15 11 N -0.63 -15.62 6.39 30.19 0.19 -15.43 15 12 O -0.17 -3.94 11.11 -29.60 -0.33 -4.27 15 13 C 0.05 0.78 6.05 37.16 0.22 1.01 15 14 C -0.10 -1.47 4.00 -89.81 -0.36 -1.83 15 15 C -0.13 -1.74 7.65 -25.82 -0.20 -1.94 15 16 C -0.14 -1.46 8.09 -25.83 -0.21 -1.67 15 17 C -0.13 -1.39 7.65 -25.92 -0.20 -1.59 15 18 H 0.27 7.34 8.29 -40.82 -0.34 7.01 15 19 H 0.38 7.94 8.52 -40.82 -0.35 7.60 15 20 H 0.05 0.73 8.14 -51.93 -0.42 0.31 15 21 H 0.05 0.74 7.88 -51.93 -0.41 0.33 15 22 H 0.10 1.47 8.14 -51.93 -0.42 1.05 15 23 H 0.08 1.04 7.92 -51.93 -0.41 0.63 15 24 H 0.07 0.96 8.14 -51.93 -0.42 0.54 15 25 H 0.08 0.76 8.14 -51.93 -0.42 0.34 15 26 H 0.07 0.60 8.14 -51.93 -0.42 0.18 15 27 H 0.07 0.66 8.14 -51.92 -0.42 0.24 15 28 H 0.08 0.79 8.10 -51.93 -0.42 0.37 15 LS Contribution 249.40 15.07 3.76 3.76 Total: -1.00 -35.63 249.40 -5.89 -41.52 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -3.67 Total: 4.08 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: -1.28 Total: -2.33 kcal Atomic # 7 Polarization: -38.83 SS G_CDS: 0.85 Total: -37.98 kcal Atomic # 8 Polarization: -23.45 SS G_CDS: -0.53 Total: -23.98 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.93 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -35.63 -5.89 -41.52 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688532764.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.289 kcal (2) G-P(sol) polarization free energy of solvation -35.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds