Wall clock time and date at job start Sun Mar 29 2020 22:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30675 * 1 3 3 Si 1.86804 * 119.99453 * 2 1 4 4 H 1.48503 * 109.46823 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47318 * 299.99769 * 3 2 1 6 6 H 1.48501 * 109.46975 * 60.00431 * 3 2 1 7 7 C 1.40048 * 120.00320 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99531 * 180.02562 * 7 2 1 9 9 C 1.46370 * 120.00161 * 359.97438 * 7 2 1 10 10 O 1.21694 * 119.99619 * 0.02562 * 9 7 2 11 11 N 1.34774 * 120.00366 * 180.02562 * 9 7 2 12 12 O 1.41596 * 120.00327 * 180.02562 * 11 9 7 13 13 C 1.42898 * 114.00162 * 179.97438 * 12 11 9 14 14 C 1.52997 * 109.47319 * 180.02562 * 13 12 11 15 15 C 1.53785 * 113.61570 * 274.13969 * 14 13 12 16 16 C 1.53956 * 87.02052 * 220.04627 * 15 14 13 17 17 C 1.53777 * 87.11087 * 25.36196 * 16 15 14 18 18 H 0.96993 * 120.00549 * 0.02562 * 1 2 3 19 19 H 0.96996 * 119.99938 * 0.02562 * 11 9 7 20 20 H 1.09002 * 109.47259 * 300.00377 * 13 12 11 21 21 H 1.09001 * 109.47074 * 60.00398 * 13 12 11 22 22 H 1.09001 * 112.85054 * 45.33390 * 14 13 12 23 23 H 1.09000 * 113.61195 * 334.56762 * 15 14 13 24 24 H 1.09001 * 113.61520 * 105.46896 * 15 14 13 25 25 H 1.09005 * 113.53676 * 270.80967 * 16 15 14 26 26 H 1.08993 * 113.66514 * 139.93360 * 16 15 14 27 27 H 1.09011 * 113.61618 * 220.09268 * 17 16 15 28 28 H 1.09000 * 113.69499 * 89.19666 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2406 1.6179 0.0000 4 1 3.7007 1.3466 0.0006 5 1 1.8819 2.3965 -1.2125 6 1 1.8819 2.3965 1.2126 7 6 2.0071 -1.2128 -0.0005 8 1 3.0871 -1.2127 -0.0001 9 6 1.2753 -2.4805 -0.0005 10 8 0.0584 -2.4805 -0.0005 11 7 1.9492 -3.6476 -0.0005 12 8 1.2413 -4.8739 -0.0011 13 6 2.0813 -6.0300 -0.0016 14 6 1.2142 -7.2905 -0.0028 15 6 0.7807 -7.7414 1.4021 16 6 1.0332 -9.1846 0.9292 17 6 2.0238 -8.5952 -0.0886 18 1 -0.4850 0.8399 -0.0004 19 1 2.9192 -3.6476 -0.0002 20 1 2.7106 -6.0215 -0.8916 21 1 2.7105 -6.0223 0.8884 22 1 0.3928 -7.2385 -0.7175 23 1 1.4569 -7.4165 2.1929 24 1 -0.2652 -7.5307 1.6250 25 1 0.1614 -9.6511 0.4703 26 1 1.5048 -9.8157 1.6824 27 1 1.9799 -9.0726 -1.0677 28 1 3.0409 -8.5037 0.2924 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688532764.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:09 Heat of formation + Delta-G solvation = -48.575010 kcal Electronic energy + Delta-G solvation = -12349.096563 eV Core-core repulsion = 9980.663129 eV Total energy + Delta-G solvation = -2368.433434 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 199.100 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.06261 -39.17030 -37.30374 -34.68216 -32.67095 -29.36491 -27.90857 -26.51356 -23.71704 -22.38779 -20.35616 -19.56917 -18.24285 -17.56690 -16.80555 -16.22865 -15.90674 -15.47377 -14.89042 -14.53023 -14.06751 -13.37317 -13.30250 -13.10232 -12.77495 -12.74271 -12.65218 -11.96047 -11.83786 -11.54511 -11.31711 -11.09674 -10.96766 -10.00319 -9.39020 -8.36204 -6.95661 1.37991 1.44086 1.55027 1.67132 2.31192 2.42481 3.54707 3.57842 3.65766 3.74941 3.92206 4.24676 4.27931 4.46669 4.55195 4.80789 4.81783 4.91069 5.07137 5.09064 5.27400 5.29674 5.54331 5.63059 6.11003 6.50484 6.77470 7.37059 8.43145 8.61131 Molecular weight = 199.10amu Principal moments of inertia in cm(-1) A = 0.102416 B = 0.006255 C = 0.006045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 273.329674 B = 4474.994218 C = 4631.101721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.025 3.975 3 Si 1.014 2.986 4 H -0.241 1.241 5 H -0.267 1.267 6 H -0.267 1.267 7 C -0.558 4.558 8 H 0.102 0.898 9 C 0.545 3.455 10 O -0.624 6.624 11 N -0.619 5.619 12 O -0.200 6.200 13 C 0.040 3.960 14 C -0.117 4.117 15 C -0.145 4.145 16 C -0.129 4.129 17 C -0.115 4.115 18 H 0.279 0.721 19 H 0.404 0.596 20 H 0.063 0.937 21 H 0.064 0.936 22 H 0.083 0.917 23 H 0.082 0.918 24 H 0.053 0.947 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.603 -11.859 0.856 14.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.190 4.190 3 Si 0.832 3.168 4 H -0.164 1.164 5 H -0.192 1.192 6 H -0.192 1.192 7 C -0.595 4.595 8 H 0.120 0.880 9 C 0.351 3.649 10 O -0.509 6.509 11 N -0.327 5.327 12 O -0.203 6.203 13 C -0.037 4.037 14 C -0.137 4.137 15 C -0.182 4.182 16 C -0.166 4.166 17 C -0.152 4.152 18 H 0.089 0.911 19 H 0.245 0.755 20 H 0.082 0.918 21 H 0.082 0.918 22 H 0.101 0.899 23 H 0.101 0.899 24 H 0.072 0.928 25 H 0.105 0.895 26 H 0.105 0.895 27 H 0.101 0.899 28 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 7.337 -11.837 0.856 13.952 hybrid contribution 0.421 0.461 -0.034 0.625 sum 7.758 -11.376 0.822 13.794 Atomic orbital electron populations 1.70216 1.09859 1.29457 1.35610 1.27160 0.95681 1.05217 0.90971 0.84742 0.79298 0.74169 0.78608 1.16358 1.19208 1.19216 1.21248 0.95098 0.87705 1.55456 0.88024 1.19141 0.87427 0.81831 0.76513 1.90564 1.16483 1.86552 1.57304 1.47928 1.06607 0.94632 1.83509 1.90490 1.25348 1.06974 1.97484 1.23152 0.94734 0.84605 1.01240 1.22646 0.99405 0.92213 0.99434 1.23075 1.01303 0.97817 0.96044 1.22802 0.99734 0.95087 0.98994 1.22882 0.98790 0.92760 1.00817 0.91135 0.75539 0.91841 0.91758 0.89907 0.89946 0.92790 0.89510 0.89508 0.89857 0.88590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.04 11.83 21.84 0.26 -50.78 15 2 C 0.02 1.39 5.50 85.30 0.47 1.85 15 3 Si 1.01 40.14 29.56 68.60 2.03 42.17 15 4 H -0.24 -8.60 7.11 99.48 0.71 -7.89 15 5 H -0.27 -10.18 7.11 99.48 0.71 -9.47 15 6 H -0.27 -10.18 7.11 99.48 0.71 -9.47 15 7 C -0.56 -31.82 9.54 24.83 0.24 -31.59 15 8 H 0.10 5.01 7.85 -2.91 -0.02 4.98 15 9 C 0.55 33.81 7.89 86.36 0.68 34.49 15 10 O -0.62 -45.37 15.43 13.01 0.20 -45.17 15 11 N -0.62 -31.09 6.39 -176.63 -1.13 -32.22 15 12 O -0.20 -9.60 11.11 -21.44 -0.24 -9.83 15 13 C 0.04 1.29 6.05 71.98 0.44 1.73 15 14 C -0.12 -3.20 4.00 -10.27 -0.04 -3.25 15 15 C -0.14 -3.66 7.65 31.18 0.24 -3.42 15 16 C -0.13 -2.32 8.09 31.18 0.25 -2.07 15 17 C -0.12 -2.12 7.65 31.12 0.24 -1.89 15 18 H 0.28 15.45 8.29 -92.71 -0.77 14.68 15 19 H 0.40 16.49 8.52 -92.71 -0.79 15.70 15 20 H 0.06 1.85 8.14 -2.39 -0.02 1.83 15 21 H 0.06 1.88 7.88 -2.39 -0.02 1.86 15 22 H 0.08 2.51 8.14 -2.39 -0.02 2.49 15 23 H 0.08 2.03 7.92 -2.39 -0.02 2.01 15 24 H 0.05 1.51 8.14 -2.39 -0.02 1.49 15 25 H 0.09 1.45 8.14 -2.38 -0.02 1.43 15 26 H 0.09 1.26 8.14 -2.39 -0.02 1.24 15 27 H 0.08 1.33 8.14 -2.38 -0.02 1.31 15 28 H 0.10 1.52 8.10 -2.39 -0.02 1.51 15 Total: -1.00 -80.26 249.40 4.00 -76.27 By element: Atomic # 1 Polarization: 23.33 SS G_CDS: 0.37 Total: 23.70 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: 2.51 Total: -4.13 kcal Atomic # 7 Polarization: -82.12 SS G_CDS: -0.87 Total: -82.99 kcal Atomic # 8 Polarization: -54.97 SS G_CDS: -0.04 Total: -55.01 kcal Atomic # 14 Polarization: 40.14 SS G_CDS: 2.03 Total: 42.17 kcal Total: -80.26 4.00 -76.27 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688532764.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.691 kcal (2) G-P(sol) polarization free energy of solvation -80.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds