Wall clock time and date at job start Sun Mar 29 2020 21:45:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 110.43632 * 2 1 4 4 C 1.54892 * 110.48623 * 122.68237 * 2 1 3 5 5 C 1.54893 * 102.74908 * 156.62162 * 4 2 1 6 6 C 1.54269 * 104.19601 * 322.06180 * 5 4 2 7 7 H 1.09001 * 110.02855 * 264.32411 * 6 5 4 8 8 O 1.42894 * 110.07275 * 142.91821 * 6 5 4 9 9 C 1.42898 * 114.00073 * 92.80588 * 8 6 5 10 10 C 1.53007 * 109.47073 * 179.97438 * 9 8 6 11 11 C 1.50696 * 109.46838 * 179.97438 * 10 9 8 12 12 H 1.07995 * 120.00290 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99567 * 180.02562 * 11 10 9 14 14 N 1.31507 * 120.00147 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 119.99730 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47549 * 60.00229 * 15 13 11 17 17 H 1.48503 * 109.47119 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47017 * 300.00159 * 15 13 11 19 19 C 1.53873 * 106.59739 * 23.60384 * 6 5 4 20 20 H 1.09002 * 109.47153 * 182.54082 * 1 2 3 21 21 H 1.09001 * 109.46832 * 62.54273 * 1 2 3 22 22 H 1.09004 * 109.47261 * 302.54255 * 1 2 3 23 23 H 1.09006 * 110.75509 * 274.93413 * 4 2 1 24 24 H 1.08994 * 110.75559 * 38.30451 * 4 2 1 25 25 H 1.08996 * 110.48467 * 203.38049 * 5 4 2 26 26 H 1.08999 * 110.59761 * 80.79225 * 5 4 2 27 27 H 1.08999 * 109.47215 * 299.99732 * 9 8 6 28 28 H 1.09009 * 109.46871 * 59.99920 * 9 8 6 29 29 H 1.08999 * 109.47382 * 300.00243 * 10 9 8 30 30 H 1.09002 * 109.46188 * 60.00476 * 10 9 8 31 31 H 0.96998 * 120.00104 * 179.97438 * 14 13 11 32 32 H 1.09000 * 110.03271 * 240.71599 * 19 6 5 33 33 H 1.09009 * 110.02602 * 119.28924 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 6 2.0721 -0.7835 1.2212 5 6 3.4907 -1.1989 0.7586 6 6 3.3166 -1.5395 -0.7359 7 1 3.1693 -2.6124 -0.8596 8 8 4.4652 -1.1154 -1.4727 9 6 5.4631 -2.1266 -1.6263 10 6 6.6398 -1.5645 -2.4267 11 6 7.6924 -2.6307 -2.5882 12 1 7.5376 -3.6113 -2.1629 13 6 8.8533 -2.3543 -3.2790 14 7 9.0420 -1.1602 -3.7964 15 14 10.1578 -3.6762 -3.4797 16 1 9.5788 -4.8376 -4.2015 17 1 11.3004 -3.1303 -4.2555 18 1 10.6317 -4.1114 -2.1413 19 6 2.0699 -0.7773 -1.2181 20 1 -0.3633 -1.0267 0.0456 21 1 -0.3633 0.4739 -0.9119 22 1 -0.3634 0.5528 0.8663 23 1 2.1251 -0.1407 2.1000 24 1 1.4580 -1.6617 1.4203 25 1 3.8315 -2.0738 1.3121 26 1 4.1915 -0.3733 0.8825 27 1 5.8111 -2.4460 -0.6439 28 1 5.0380 -2.9792 -2.1561 29 1 6.2916 -1.2454 -3.4091 30 1 7.0650 -0.7119 -1.8972 31 1 9.8588 -0.9656 -4.2820 32 1 1.3177 -1.4803 -1.5759 33 1 2.3413 -0.0832 -2.0137 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000721547213.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:57 Heat of formation + Delta-G solvation = -82.191884 kcal Electronic energy + Delta-G solvation = -12534.432198 eV Core-core repulsion = 10365.800033 eV Total energy + Delta-G solvation = -2168.632165 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.77726 -36.07268 -33.14454 -30.79339 -29.70926 -27.99128 -24.76969 -24.30470 -20.83280 -20.42162 -19.65432 -16.75014 -15.90091 -15.24960 -14.80248 -14.43302 -14.16490 -13.54072 -13.19397 -12.67748 -12.32650 -12.06946 -11.82350 -11.41006 -11.02650 -10.89015 -10.83975 -10.67464 -10.51343 -10.48381 -10.21271 -10.07211 -9.42511 -9.18444 -8.77335 -8.32995 -6.00964 -4.04596 3.33466 3.37516 3.39827 4.31106 4.53190 4.66801 4.73872 4.91868 5.34857 5.38829 5.39545 5.54208 5.61495 5.64522 5.80081 5.86069 5.91148 6.02503 6.09662 6.16980 6.26620 6.29562 6.42784 6.46828 6.48791 6.93738 7.60438 7.82530 7.88483 8.18020 8.39426 9.01907 9.58903 11.10718 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.091741 B = 0.005775 C = 0.005647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 305.134762 B = 4847.032777 C = 4957.248605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.097 4.097 3 H 0.075 0.925 4 C -0.117 4.117 5 C -0.147 4.147 6 C 0.082 3.918 7 H 0.055 0.945 8 O -0.385 6.385 9 C 0.068 3.932 10 C 0.025 3.975 11 C -0.524 4.524 12 H 0.055 0.945 13 C 0.059 3.941 14 N -0.892 5.892 15 Si 0.897 3.103 16 H -0.276 1.276 17 H -0.286 1.286 18 H -0.276 1.276 19 C -0.119 4.119 20 H 0.053 0.947 21 H 0.054 0.946 22 H 0.052 0.948 23 H 0.064 0.936 24 H 0.065 0.935 25 H 0.063 0.937 26 H 0.077 0.923 27 H 0.033 0.967 28 H 0.033 0.967 29 H 0.023 0.977 30 H 0.024 0.976 31 H 0.262 0.738 32 H 0.067 0.933 33 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.156 0.298 7.828 16.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.116 4.116 3 H 0.094 0.906 4 C -0.155 4.155 5 C -0.185 4.185 6 C 0.024 3.976 7 H 0.073 0.927 8 O -0.304 6.304 9 C -0.007 4.007 10 C -0.012 4.012 11 C -0.563 4.563 12 H 0.074 0.926 13 C -0.143 4.143 14 N -0.530 5.530 15 Si 0.724 3.276 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.202 1.202 19 C -0.157 4.157 20 H 0.072 0.928 21 H 0.073 0.927 22 H 0.071 0.929 23 H 0.083 0.917 24 H 0.083 0.917 25 H 0.081 0.919 26 H 0.096 0.904 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.042 0.958 30 H 0.042 0.958 31 H 0.072 0.928 32 H 0.085 0.915 33 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -13.999 0.587 7.636 15.956 hybrid contribution 0.801 -0.995 -0.032 1.278 sum -13.197 -0.408 7.604 15.237 Atomic orbital electron populations 1.21807 0.95248 1.01569 1.01416 1.21945 0.95035 0.99598 0.94974 0.90618 1.22500 0.96106 0.99537 0.97363 1.22900 0.97277 1.01879 0.96467 1.22639 0.86976 0.97362 0.90646 0.92662 1.87987 1.28550 1.39667 1.74215 1.22889 0.89227 0.89869 0.98739 1.19064 0.90012 0.96893 0.95233 1.21031 1.02226 0.97965 1.35054 0.92646 1.24992 0.98253 0.95557 0.95450 1.69970 1.26682 1.20382 1.35999 0.86591 0.81002 0.81775 0.78229 1.20177 1.21172 1.20182 1.22312 0.95682 0.99456 0.98255 0.92766 0.92731 0.92891 0.91742 0.91653 0.91872 0.90432 0.94844 0.94858 0.95813 0.95805 0.92809 0.91464 0.90413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 9.12 37.16 0.34 -1.00 16 2 C -0.10 -1.12 3.46 -88.96 -0.31 -1.43 16 3 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 4 C -0.12 -1.33 6.33 -24.73 -0.16 -1.49 16 5 C -0.15 -2.10 6.56 -25.07 -0.16 -2.26 16 6 C 0.08 1.33 3.38 -25.61 -0.09 1.25 16 7 H 0.06 0.86 7.80 -51.93 -0.41 0.46 16 8 O -0.38 -8.11 9.90 -35.23 -0.35 -8.46 16 9 C 0.07 1.56 5.72 37.16 0.21 1.77 16 10 C 0.03 0.69 5.34 -27.88 -0.15 0.54 16 11 C -0.52 -15.25 9.11 -34.44 -0.31 -15.56 16 12 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 13 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 14 N -0.89 -27.33 13.29 55.43 0.74 -26.60 16 15 Si 0.90 21.83 29.54 -169.99 -5.02 16.80 16 16 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 17 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 C -0.12 -1.64 6.18 -25.62 -0.16 -1.79 16 20 H 0.05 0.48 8.12 -51.93 -0.42 0.06 16 21 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 22 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 23 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.06 0.67 8.04 -51.93 -0.42 0.26 16 25 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.08 1.21 8.08 -51.93 -0.42 0.79 16 27 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.03 0.73 8.10 -51.92 -0.42 0.31 16 29 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.02 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 32 H 0.07 0.81 7.84 -51.93 -0.41 0.41 16 33 H 0.08 1.16 7.96 -51.92 -0.41 0.75 16 LS Contribution 271.82 15.07 4.10 4.10 Total: -1.00 -30.62 271.82 -7.25 -37.87 By element: Atomic # 1 Polarization: 0.45 SS G_CDS: -5.83 Total: -5.38 kcal Atomic # 6 Polarization: -17.46 SS G_CDS: -0.88 Total: -18.34 kcal Atomic # 7 Polarization: -27.33 SS G_CDS: 0.74 Total: -26.60 kcal Atomic # 8 Polarization: -8.11 SS G_CDS: -0.35 Total: -8.46 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -30.62 -7.25 -37.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721547213.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.320 kcal (2) G-P(sol) polarization free energy of solvation -30.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds