Wall clock time and date at job start Sun Mar 29 2020 22:07:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86807 * 119.99970 * 2 1 4 4 H 1.48493 * 109.47192 * 270.00020 * 3 2 1 5 5 H 1.48497 * 109.46987 * 30.00181 * 3 2 1 6 6 H 1.48503 * 109.46992 * 149.99801 * 3 2 1 7 7 C 1.37874 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00562 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99813 * 0.02562 * 7 2 1 10 10 C 1.50700 * 109.46879 * 180.02562 * 9 7 2 11 11 O 1.21280 * 120.00420 * 359.97438 * 10 9 7 12 12 N 1.34782 * 119.99598 * 180.02562 * 10 9 7 13 13 C 1.47052 * 120.80772 * 180.02562 * 12 10 9 14 14 C 1.53339 * 108.41001 * 129.60956 * 13 12 10 15 15 C 1.53201 * 109.02219 * 52.73191 * 14 13 12 16 16 C 1.53069 * 109.39881 * 300.27338 * 15 14 13 17 17 O 1.42127 * 120.80971 * 359.97438 * 12 10 9 18 18 H 0.97011 * 120.00120 * 359.97438 * 1 2 3 19 19 H 1.08997 * 109.46714 * 60.00096 * 9 7 2 20 20 H 1.08998 * 109.46545 * 299.99907 * 9 7 2 21 21 H 1.08998 * 109.67852 * 249.33726 * 13 12 10 22 22 H 1.09004 * 109.68355 * 9.83829 * 13 12 10 23 23 H 1.09002 * 109.55155 * 172.59572 * 14 13 12 24 24 H 1.09000 * 109.54478 * 292.87724 * 14 13 12 25 25 H 1.09001 * 109.51924 * 180.27833 * 15 14 13 26 26 H 1.09002 * 109.46562 * 60.23651 * 15 14 13 27 27 H 1.09002 * 109.49458 * 299.99500 * 16 15 14 28 28 H 1.08996 * 109.49215 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2303 -3.6446 0.0018 11 8 3.4227 -3.4230 0.0022 12 7 1.7810 -4.9153 0.0015 13 6 2.7207 -6.0464 0.0033 14 6 2.3149 -7.0113 1.1238 15 6 0.8330 -7.3659 0.9652 16 6 -0.0068 -6.0887 1.0460 17 8 0.3874 -5.1947 0.0005 18 1 -0.4851 0.8401 0.0004 19 1 0.6247 -2.5570 -0.8897 20 1 0.6240 -2.5566 0.8903 21 1 2.6781 -6.5604 -0.9569 22 1 3.7329 -5.6825 0.1801 23 1 2.9158 -7.9184 1.0595 24 1 2.4742 -6.5346 2.0910 25 1 0.5345 -8.0481 1.7612 26 1 0.6754 -7.8440 -0.0016 27 1 0.1512 -5.6100 2.0125 28 1 -1.0616 -6.3392 0.9329 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143189596.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:26 Heat of formation + Delta-G solvation = -62.746672 kcal Electronic energy + Delta-G solvation = -12916.496859 eV Core-core repulsion = 10547.448896 eV Total energy + Delta-G solvation = -2369.047963 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 199.100 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.87687 -38.99487 -35.25081 -34.77069 -33.81962 -31.14077 -28.29867 -26.01308 -24.93951 -22.23960 -20.67964 -18.67201 -18.14596 -17.74237 -16.64773 -16.44513 -16.05932 -15.44420 -15.14305 -14.92506 -14.36380 -14.09318 -13.99629 -13.23371 -12.84760 -12.59692 -12.32051 -12.11597 -12.01838 -11.70818 -11.48020 -11.38446 -10.64329 -10.60474 -9.82684 -8.25231 -6.35024 0.98313 1.40509 1.42488 1.55184 1.64846 2.41221 3.09095 3.22086 3.79348 3.85338 3.89358 4.21978 4.40399 4.42777 4.59778 4.80225 4.83043 4.96388 5.03753 5.09791 5.21976 5.25401 5.56040 5.71992 5.98229 6.46203 6.78263 7.18780 7.35514 8.87387 Molecular weight = 199.10amu Principal moments of inertia in cm(-1) A = 0.065746 B = 0.008762 C = 0.007964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 425.779820 B = 3194.686626 C = 3515.067536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.008 3.992 3 Si 0.971 3.029 4 H -0.270 1.270 5 H -0.273 1.273 6 H -0.271 1.271 7 C -0.542 4.542 8 H 0.060 0.940 9 C 0.022 3.978 10 C 0.536 3.464 11 O -0.562 6.562 12 N -0.488 5.488 13 C 0.092 3.908 14 C -0.133 4.133 15 C -0.142 4.142 16 C 0.014 3.986 17 O -0.160 6.160 18 H 0.268 0.732 19 H 0.034 0.966 20 H 0.034 0.966 21 H 0.086 0.914 22 H 0.089 0.911 23 H 0.113 0.887 24 H 0.059 0.941 25 H 0.108 0.892 26 H 0.083 0.917 27 H 0.051 0.949 28 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.073 -15.089 2.635 15.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.190 4.190 3 Si 0.795 3.205 4 H -0.195 1.195 5 H -0.198 1.198 6 H -0.195 1.195 7 C -0.580 4.580 8 H 0.078 0.922 9 C -0.018 4.018 10 C 0.329 3.671 11 O -0.441 6.441 12 N -0.269 5.269 13 C -0.028 4.028 14 C -0.171 4.171 15 C -0.180 4.180 16 C -0.063 4.063 17 O -0.163 6.163 18 H 0.077 0.923 19 H 0.052 0.948 20 H 0.052 0.948 21 H 0.104 0.896 22 H 0.107 0.893 23 H 0.132 0.868 24 H 0.078 0.922 25 H 0.126 0.874 26 H 0.102 0.898 27 H 0.070 0.930 28 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 0.413 -14.784 2.497 14.999 hybrid contribution 0.032 0.795 0.147 0.809 sum 0.445 -13.989 2.645 14.244 Atomic orbital electron populations 1.70071 1.07426 1.28199 1.50879 1.25890 0.95875 1.03056 0.94208 0.85359 0.78445 0.78003 0.78693 1.19521 1.19758 1.19520 1.21418 0.93787 0.91064 1.51713 0.92196 1.18904 0.93937 0.90624 0.98302 1.21405 0.89727 0.83007 0.73008 1.90549 1.18197 1.83017 1.52322 1.50386 0.95582 1.05798 1.75107 1.22230 0.92720 0.86631 1.01171 1.21996 0.97915 0.99883 0.97319 1.22074 0.94133 0.96856 1.04933 1.23516 1.01388 0.90558 0.90869 1.90738 1.04235 1.68874 1.52495 0.92314 0.94827 0.94819 0.89566 0.89273 0.86826 0.92177 0.87380 0.89818 0.93049 0.84462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.50 13.29 21.44 0.28 -56.21 15 2 C 0.01 0.49 5.46 84.66 0.46 0.95 15 3 Si 0.97 46.29 29.54 68.60 2.03 48.32 15 4 H -0.27 -12.39 7.11 99.48 0.71 -11.68 15 5 H -0.27 -12.29 7.11 99.48 0.71 -11.58 15 6 H -0.27 -12.75 7.11 99.48 0.71 -12.04 15 7 C -0.54 -33.40 8.92 25.60 0.23 -33.17 15 8 H 0.06 3.80 6.75 -2.91 -0.02 3.78 15 9 C 0.02 1.23 4.82 29.10 0.14 1.37 15 10 C 0.54 27.00 7.80 87.66 0.68 27.69 15 11 O -0.56 -30.68 14.91 -3.03 -0.05 -30.73 15 12 N -0.49 -19.34 3.60 -461.28 -1.66 -21.00 15 13 C 0.09 2.71 6.62 86.39 0.57 3.28 15 14 C -0.13 -2.73 6.14 30.78 0.19 -2.54 15 15 C -0.14 -2.52 6.07 30.68 0.19 -2.33 15 16 C 0.01 0.34 7.08 72.01 0.51 0.85 15 17 O -0.16 -5.80 11.01 -39.97 -0.44 -6.24 15 18 H 0.27 15.19 8.31 -92.70 -0.77 14.42 15 19 H 0.03 2.00 8.14 -2.39 -0.02 1.98 15 20 H 0.03 1.97 8.14 -2.39 -0.02 1.95 15 21 H 0.09 2.20 8.14 -2.39 -0.02 2.18 15 22 H 0.09 2.86 7.07 -2.39 -0.02 2.85 15 23 H 0.11 1.58 8.14 -2.39 -0.02 1.56 15 24 H 0.06 1.37 8.14 -2.39 -0.02 1.35 15 25 H 0.11 1.28 8.14 -2.39 -0.02 1.26 15 26 H 0.08 1.37 8.14 -2.39 -0.02 1.35 15 27 H 0.05 1.35 8.14 -2.39 -0.02 1.33 15 28 H 0.14 2.55 8.14 -2.39 -0.02 2.53 15 Total: -1.00 -72.83 241.97 4.28 -68.55 By element: Atomic # 1 Polarization: 0.09 SS G_CDS: 1.14 Total: 1.23 kcal Atomic # 6 Polarization: -6.89 SS G_CDS: 2.97 Total: -3.92 kcal Atomic # 7 Polarization: -75.84 SS G_CDS: -1.37 Total: -77.21 kcal Atomic # 8 Polarization: -36.48 SS G_CDS: -0.49 Total: -36.96 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.32 kcal Total: -72.83 4.28 -68.55 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143189596.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.804 kcal (2) G-P(sol) polarization free energy of solvation -72.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds