Wall clock time and date at job start Sun Mar 29 2020 22:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34774 * 120.00296 * 2 1 4 4 O 1.21276 * 120.00422 * 180.02562 * 3 2 1 5 5 C 1.50708 * 119.99524 * 0.02562 * 3 2 1 6 6 C 1.50705 * 109.46894 * 179.97438 * 5 3 2 7 7 H 1.08001 * 120.00066 * 0.02562 * 6 5 3 8 8 C 1.37872 * 119.99863 * 180.02562 * 6 5 3 9 9 N 1.31512 * 120.00088 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 120.00105 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47295 * 89.99669 * 10 8 6 12 12 H 1.48500 * 109.47314 * 210.00074 * 10 8 6 13 13 H 1.48502 * 109.46843 * 330.00032 * 10 8 6 14 14 C 1.46502 * 119.99918 * 180.02562 * 2 1 3 15 15 C 1.54033 * 113.92462 * 321.59704 * 14 2 1 16 16 O 1.44178 * 85.51776 * 91.66116 * 15 14 2 17 17 C 1.44179 * 93.33804 * 24.19196 * 16 15 14 18 18 H 1.09001 * 109.47305 * 269.99738 * 1 2 3 19 19 H 1.09005 * 109.47311 * 30.00019 * 1 2 3 20 20 H 1.09007 * 109.47064 * 149.99588 * 1 2 3 21 21 H 1.08995 * 109.47508 * 299.99969 * 5 3 2 22 22 H 1.09000 * 109.47168 * 60.00059 * 5 3 2 23 23 H 0.97007 * 120.00045 * 179.97438 * 9 8 6 24 24 H 1.09002 * 112.99960 * 189.66590 * 14 2 1 25 25 H 1.09001 * 113.86391 * 205.81093 * 15 14 2 26 26 H 1.09001 * 113.86819 * 337.51314 * 15 14 2 27 27 H 1.09000 * 113.86339 * 221.65750 * 17 16 15 28 28 H 1.09001 * 113.98205 * 89.96709 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3853 2.4723 0.0006 6 6 2.3647 3.6178 0.0011 7 1 3.4265 3.4204 0.0006 8 6 1.9051 4.9176 0.0022 9 7 0.6121 5.1579 0.0033 10 14 3.1189 6.3375 0.0021 11 1 3.4396 6.7146 -1.3980 12 1 2.5195 7.5012 0.7033 13 1 4.3627 5.9254 0.7010 14 6 2.1975 -1.2688 -0.0006 15 6 1.5542 -2.3618 0.8736 16 8 0.8589 -2.7539 -0.3270 17 6 1.8589 -2.1819 -1.1939 18 1 -0.3634 0.0000 1.0277 19 1 -0.3634 0.8900 -0.5139 20 1 -0.3633 -0.8900 -0.5139 21 1 0.7583 2.5303 -0.8891 22 1 0.7590 2.5298 0.8908 23 1 0.2887 6.0725 0.0045 24 1 3.2670 -1.1431 0.1680 25 1 2.2607 -3.1078 1.2377 26 1 0.9007 -1.9739 1.6550 27 1 1.4470 -1.6513 -2.0523 28 1 2.6592 -2.8715 -1.4625 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143196681.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:50 Heat of formation + Delta-G solvation = -68.480271 kcal Electronic energy + Delta-G solvation = -12855.338294 eV Core-core repulsion = 10486.041704 eV Total energy + Delta-G solvation = -2369.296591 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 199.100 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.86614 -39.91715 -35.85110 -35.13415 -31.43961 -29.71747 -27.65111 -27.37088 -25.72952 -22.00653 -19.75244 -18.71181 -17.95152 -17.63014 -16.98420 -16.68013 -16.26988 -16.12862 -15.55082 -14.35039 -14.32482 -14.02501 -13.36110 -13.31293 -13.16079 -12.80011 -12.64508 -12.42028 -12.06020 -11.60810 -11.40391 -10.99788 -10.63650 -10.41748 -9.66014 -8.26433 -6.34371 1.40139 1.40916 1.53477 1.73692 1.99084 2.42602 2.64176 3.08644 3.41065 3.99055 4.12543 4.23565 4.35422 4.43513 4.56834 4.69018 4.82005 4.87235 5.00029 5.03508 5.11368 5.23406 5.60083 5.74755 6.00537 6.44867 6.78456 7.29238 7.39155 8.85652 Molecular weight = 199.10amu Principal moments of inertia in cm(-1) A = 0.077284 B = 0.008053 C = 0.007579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 362.214194 B = 3476.333147 C = 3693.723172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.605 5.605 3 C 0.518 3.482 4 O -0.581 6.581 5 C 0.015 3.985 6 C -0.540 4.540 7 H 0.055 0.945 8 C 0.012 3.988 9 N -0.924 5.924 10 Si 0.965 3.035 11 H -0.271 1.271 12 H -0.273 1.273 13 H -0.274 1.274 14 C 0.054 3.946 15 C 0.040 3.960 16 O -0.392 6.392 17 C 0.033 3.967 18 H 0.064 0.936 19 H 0.068 0.932 20 H 0.095 0.905 21 H 0.042 0.958 22 H 0.041 0.959 23 H 0.268 0.732 24 H 0.091 0.909 25 H 0.119 0.881 26 H 0.098 0.902 27 H 0.089 0.911 28 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.109 -13.156 0.117 13.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.339 5.339 3 C 0.309 3.691 4 O -0.460 6.460 5 C -0.024 4.024 6 C -0.578 4.578 7 H 0.073 0.927 8 C -0.187 4.187 9 N -0.563 5.563 10 Si 0.790 3.210 11 H -0.196 1.196 12 H -0.198 1.198 13 H -0.199 1.199 14 C -0.051 4.051 15 C -0.038 4.038 16 O -0.311 6.311 17 C -0.045 4.045 18 H 0.082 0.918 19 H 0.087 0.913 20 H 0.113 0.887 21 H 0.060 0.940 22 H 0.059 0.941 23 H 0.077 0.923 24 H 0.109 0.891 25 H 0.137 0.863 26 H 0.116 0.884 27 H 0.107 0.893 28 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -0.870 -13.143 0.074 13.172 hybrid contribution 0.518 1.011 0.013 1.136 sum -0.352 -12.132 0.088 12.137 Atomic orbital electron populations 1.21932 0.77573 1.04022 1.02799 1.47768 1.07991 1.04264 1.73834 1.21660 0.87876 0.86430 0.73126 1.90493 1.16245 1.87956 1.51326 1.19058 0.96114 0.88600 0.98643 1.21388 0.93623 0.91347 1.51481 0.92715 1.25787 0.97224 1.01369 0.94347 1.70028 1.13902 1.21410 1.50983 0.85442 0.78791 0.78171 0.78605 1.19635 1.19807 1.19884 1.23922 0.98409 0.85015 0.97765 1.24465 0.95559 0.93888 0.89847 1.89614 1.41996 1.81820 1.17689 1.24511 0.91600 0.93700 0.94695 0.91766 0.91309 0.88696 0.93985 0.94069 0.92317 0.89051 0.86343 0.88419 0.89298 0.86601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.31 9.23 127.77 1.18 3.49 15 2 N -0.61 -21.57 3.10 -857.59 -2.66 -24.23 15 3 C 0.52 24.37 7.67 87.66 0.67 25.05 15 4 O -0.58 -31.06 14.94 -3.02 -0.05 -31.10 15 5 C 0.02 0.79 4.01 29.11 0.12 0.91 15 6 C -0.54 -32.14 8.92 25.60 0.23 -31.91 15 7 H 0.05 3.42 6.75 -2.91 -0.02 3.40 15 8 C 0.01 0.66 5.46 84.65 0.46 1.13 15 9 N -0.92 -54.07 13.29 21.44 0.28 -53.79 15 10 Si 0.97 45.34 29.54 68.60 2.03 47.36 15 11 H -0.27 -12.28 7.11 99.48 0.71 -11.58 15 12 H -0.27 -12.15 7.11 99.48 0.71 -11.45 15 13 H -0.27 -12.87 7.11 99.48 0.71 -12.16 15 14 C 0.05 1.55 4.56 45.69 0.21 1.76 15 15 C 0.04 0.86 8.45 72.27 0.61 1.47 15 16 O -0.39 -9.55 10.83 -148.98 -1.61 -11.16 15 17 C 0.03 0.76 8.58 72.27 0.62 1.38 15 18 H 0.06 1.72 8.14 -2.39 -0.02 1.70 15 19 H 0.07 2.19 6.44 -2.38 -0.02 2.17 15 20 H 0.09 2.41 6.23 -2.38 -0.01 2.40 15 21 H 0.04 2.23 7.40 -2.39 -0.02 2.21 15 22 H 0.04 2.19 8.11 -2.39 -0.02 2.17 15 23 H 0.27 14.67 8.31 -92.70 -0.77 13.90 15 24 H 0.09 2.90 7.22 -2.39 -0.02 2.88 15 25 H 0.12 1.87 8.14 -2.39 -0.02 1.85 15 26 H 0.10 2.05 7.86 -2.39 -0.02 2.03 15 27 H 0.09 2.14 8.14 -2.39 -0.02 2.13 15 28 H 0.12 2.03 8.14 -2.39 -0.02 2.01 15 Total: -1.00 -69.24 240.78 3.24 -66.00 By element: Atomic # 1 Polarization: 2.50 SS G_CDS: 1.15 Total: 3.65 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: 4.10 Total: 3.27 kcal Atomic # 7 Polarization: -75.64 SS G_CDS: -2.37 Total: -78.02 kcal Atomic # 8 Polarization: -40.61 SS G_CDS: -1.66 Total: -42.27 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.36 kcal Total: -69.24 3.24 -66.00 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143196681.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.483 kcal (2) G-P(sol) polarization free energy of solvation -69.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds