Wall clock time and date at job start Sun Mar 29 2020 21:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.37098 * 119.99332 * 2 1 4 4 H 1.07998 * 119.99591 * 156.87190 * 3 2 1 5 5 C 1.38952 * 120.00264 * 336.59779 * 3 2 1 6 6 N 1.31403 * 120.00154 * 349.35040 * 5 3 2 7 7 Si 1.86803 * 119.99902 * 169.34846 * 5 3 2 8 8 H 1.48497 * 109.46924 * 93.06714 * 7 5 3 9 9 H 1.48506 * 109.47042 * 213.06832 * 7 5 3 10 10 H 1.48500 * 109.47168 * 333.06754 * 7 5 3 11 11 C 1.34769 * 120.00076 * 180.02562 * 2 1 3 12 12 O 1.21298 * 119.99742 * 179.97438 * 11 2 1 13 13 C 1.50697 * 120.00377 * 0.02562 * 11 2 1 14 14 H 1.08995 * 112.84919 * 311.19739 * 13 11 2 15 15 C 1.53785 * 113.61348 * 82.50374 * 13 11 2 16 16 C 1.53781 * 87.08096 * 139.98318 * 15 13 11 17 17 C 1.53778 * 113.61693 * 179.97438 * 13 11 2 18 18 H 1.09005 * 113.61508 * 334.57038 * 17 13 11 19 19 N 1.46901 * 113.61380 * 105.46871 * 17 13 11 20 20 H 1.09005 * 109.46796 * 88.15002 * 1 2 3 21 21 H 1.08998 * 109.46571 * 208.13702 * 1 2 3 22 22 H 1.08995 * 109.47657 * 328.14770 * 1 2 3 23 23 H 0.97006 * 120.00144 * 180.02562 * 6 5 3 24 24 H 1.09005 * 113.61257 * 254.52827 * 15 13 11 25 25 H 1.08990 * 113.61470 * 25.43279 * 15 13 11 26 26 H 1.08998 * 113.61245 * 220.02190 * 16 15 13 27 27 H 1.09002 * 113.69003 * 89.12375 * 16 15 13 28 28 H 1.00897 * 111.00152 * 180.02562 * 19 17 13 29 29 H 1.00901 * 111.00316 * 303.95122 * 19 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1504 1.1874 0.0000 4 1 3.1653 1.2250 0.3674 5 6 1.5413 2.3412 -0.4779 6 7 0.3970 2.2628 -1.1191 7 14 2.3492 4.0039 -0.2090 8 1 3.1939 4.3395 -1.3834 9 1 1.3009 5.0421 -0.0403 10 1 3.1951 3.9518 1.0104 11 6 2.1389 -1.1671 -0.0005 12 8 3.3519 -1.1670 -0.0010 13 6 1.3856 -2.4723 -0.0017 14 1 0.6007 -2.5086 0.7538 15 6 0.9189 -2.9129 -1.3992 16 6 1.3050 -4.3443 -0.9906 17 6 2.2978 -3.7102 -0.0028 18 1 3.2830 -3.5262 -0.4315 19 7 2.3579 -4.3980 1.2938 20 1 -0.3633 0.0332 -1.0272 21 1 -0.3632 -0.9062 0.4846 22 1 -0.3634 0.8728 0.5423 23 1 -0.0281 3.0683 -1.4530 24 1 -0.1502 -2.7795 -1.5648 25 1 1.5272 -2.5111 -2.2094 26 1 1.7849 -4.9116 -1.7880 27 1 0.4980 -4.8943 -0.5064 28 1 2.9661 -5.2019 1.2489 29 1 2.6478 -3.7663 2.0253 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160584359.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:11 Heat of formation + Delta-G solvation = -10.219685 kcal Electronic energy + Delta-G solvation = -12995.259456 eV Core-core repulsion = 10726.207896 eV Total energy + Delta-G solvation = -2269.051560 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.44696 -36.93663 -34.52961 -31.81480 -31.32989 -26.96116 -25.74917 -23.89922 -23.40286 -19.89106 -18.32794 -16.86872 -16.33558 -15.24388 -14.94412 -14.80687 -14.12132 -13.80391 -13.23891 -12.79758 -11.99901 -11.83424 -11.38503 -11.23007 -11.07595 -10.87390 -10.77170 -10.39906 -10.34688 -10.26256 -9.90287 -9.00119 -8.45155 -8.25447 -7.63158 -6.27950 -3.85398 3.17605 3.25866 3.31777 3.91495 4.15632 4.73326 4.94390 5.08355 5.13255 5.21968 5.40840 5.50261 5.92789 6.07767 6.14259 6.15526 6.29206 6.47306 6.62465 6.75669 6.94438 7.28033 7.47702 7.58644 7.68521 8.17965 8.52988 9.22621 9.47936 10.04556 10.75455 Molecular weight = 198.11amu Principal moments of inertia in cm(-1) A = 0.063217 B = 0.009873 C = 0.009129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 442.815395 B = 2835.321997 C = 3066.477932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.115 3.885 2 N -0.444 5.444 3 C -0.307 4.307 4 H 0.097 0.903 5 C 0.030 3.970 6 N -0.884 5.884 7 Si 0.926 3.074 8 H -0.278 1.278 9 H -0.283 1.283 10 H -0.270 1.270 11 C 0.452 3.548 12 O -0.597 6.597 13 C -0.117 4.117 14 H 0.104 0.896 15 C -0.121 4.121 16 C -0.130 4.130 17 C 0.080 3.920 18 H 0.073 0.927 19 N -0.840 5.840 20 H 0.057 0.943 21 H 0.027 0.973 22 H 0.066 0.934 23 H 0.267 0.733 24 H 0.072 0.928 25 H 0.081 0.919 26 H 0.061 0.939 27 H 0.085 0.915 28 H 0.334 0.666 29 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.886 -7.807 1.217 8.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 N -0.162 5.162 3 C -0.435 4.435 4 H 0.114 0.886 5 C -0.173 4.173 6 N -0.523 5.523 7 Si 0.753 3.247 8 H -0.204 1.204 9 H -0.208 1.208 10 H -0.195 1.195 11 C 0.240 3.760 12 O -0.483 6.483 13 C -0.138 4.138 14 H 0.122 0.878 15 C -0.159 4.159 16 C -0.168 4.168 17 C -0.032 4.032 18 H 0.091 0.909 19 N -0.369 5.369 20 H 0.076 0.924 21 H 0.045 0.955 22 H 0.085 0.915 23 H 0.077 0.923 24 H 0.091 0.909 25 H 0.100 0.900 26 H 0.080 0.920 27 H 0.104 0.896 28 H 0.145 0.855 29 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -2.236 -7.737 1.036 8.120 hybrid contribution 1.140 1.237 0.012 1.682 sum -1.096 -6.500 1.048 6.675 Atomic orbital electron populations 1.21490 0.81135 0.98663 1.01611 1.43580 1.05545 1.04732 1.62301 1.19665 0.99864 0.84207 1.39758 0.88574 1.25347 0.96505 1.00066 0.95370 1.69996 1.17467 1.29325 1.35543 0.85924 0.78657 0.81188 0.78940 1.20409 1.20831 1.19452 1.19984 0.87850 0.84775 0.83379 1.90481 1.14114 1.87182 1.56480 1.22677 0.98977 0.93155 0.99034 0.87840 1.22639 1.01376 0.95707 0.96199 1.22961 0.99399 0.96328 0.98084 1.22719 0.97427 0.93112 0.89909 0.90877 1.58998 1.59416 1.12138 1.06310 0.92437 0.95464 0.91546 0.92326 0.90925 0.89990 0.92025 0.89608 0.85516 0.84493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.64 8.52 59.85 0.51 3.15 15 2 N -0.44 -11.69 3.02 -122.19 -0.37 -12.05 15 3 C -0.31 -8.77 9.27 -14.93 -0.14 -8.91 15 4 H 0.10 2.88 7.42 -52.49 -0.39 2.49 15 5 C 0.03 0.81 5.13 -17.47 -0.09 0.72 15 6 N -0.88 -23.93 10.63 55.50 0.59 -23.34 15 7 Si 0.93 21.10 29.57 -169.99 -5.03 16.07 15 8 H -0.28 -6.34 7.11 56.52 0.40 -5.94 15 9 H -0.28 -6.25 7.11 56.52 0.40 -5.85 15 10 H -0.27 -6.11 7.11 56.52 0.40 -5.71 15 11 C 0.45 11.30 7.15 -10.99 -0.08 11.22 15 12 O -0.60 -16.88 15.60 5.54 0.09 -16.79 15 13 C -0.12 -2.25 2.73 -90.96 -0.25 -2.49 15 14 H 0.10 1.90 6.94 -51.93 -0.36 1.54 15 15 C -0.12 -2.04 7.61 -25.92 -0.20 -2.24 15 16 C -0.13 -1.89 7.88 -25.94 -0.20 -2.10 15 17 C 0.08 1.37 4.28 -66.92 -0.29 1.08 15 18 H 0.07 1.41 7.43 -51.93 -0.39 1.02 15 19 N -0.84 -12.36 9.57 -3.99 -0.04 -12.39 15 20 H 0.06 1.36 7.54 -51.93 -0.39 0.97 15 21 H 0.03 0.53 6.14 -51.93 -0.32 0.21 15 22 H 0.07 1.60 7.08 -51.93 -0.37 1.23 15 23 H 0.27 6.82 8.31 -40.82 -0.34 6.48 15 24 H 0.07 1.11 8.14 -51.93 -0.42 0.69 15 25 H 0.08 1.50 8.09 -51.93 -0.42 1.08 15 26 H 0.06 0.81 8.14 -51.93 -0.42 0.39 15 27 H 0.09 1.17 8.14 -51.93 -0.42 0.75 15 28 H 0.33 4.11 9.08 -39.29 -0.36 3.76 15 29 H 0.34 5.17 9.07 -39.29 -0.36 4.81 15 LS Contribution 243.80 15.07 3.67 3.67 Total: -1.00 -30.93 243.80 -5.57 -36.49 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -3.75 Total: 7.92 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: -0.73 Total: 0.43 kcal Atomic # 7 Polarization: -47.97 SS G_CDS: 0.18 Total: -47.79 kcal Atomic # 8 Polarization: -16.88 SS G_CDS: 0.09 Total: -16.79 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.03 Total: 16.07 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -30.93 -5.57 -36.49 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160584359.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.273 kcal (2) G-P(sol) polarization free energy of solvation -30.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds