Wall clock time and date at job start Sun Mar 29 2020 21:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.37098 * 119.99332 * 2 1 4 4 H 1.07998 * 119.99591 * 156.87190 * 3 2 1 5 5 C 1.38952 * 120.00264 * 336.59779 * 3 2 1 6 6 N 1.31403 * 120.00154 * 349.35040 * 5 3 2 7 7 Si 1.86803 * 119.99902 * 169.34846 * 5 3 2 8 8 H 1.48497 * 109.46924 * 93.06714 * 7 5 3 9 9 H 1.48506 * 109.47042 * 213.06832 * 7 5 3 10 10 H 1.48500 * 109.47168 * 333.06754 * 7 5 3 11 11 C 1.34769 * 120.00076 * 180.02562 * 2 1 3 12 12 O 1.21298 * 119.99742 * 179.97438 * 11 2 1 13 13 C 1.50697 * 120.00377 * 0.02562 * 11 2 1 14 14 H 1.08995 * 112.84919 * 311.19739 * 13 11 2 15 15 C 1.53785 * 113.61348 * 82.50374 * 13 11 2 16 16 C 1.53781 * 87.08096 * 139.98318 * 15 13 11 17 17 C 1.53778 * 113.61693 * 179.97438 * 13 11 2 18 18 H 1.09005 * 113.61508 * 334.57038 * 17 13 11 19 19 N 1.46901 * 113.61380 * 105.46871 * 17 13 11 20 20 H 1.09005 * 109.46796 * 88.15002 * 1 2 3 21 21 H 1.08998 * 109.46571 * 208.13702 * 1 2 3 22 22 H 1.08995 * 109.47657 * 328.14770 * 1 2 3 23 23 H 0.97006 * 120.00144 * 180.02562 * 6 5 3 24 24 H 1.09005 * 113.61257 * 254.52827 * 15 13 11 25 25 H 1.08990 * 113.61470 * 25.43279 * 15 13 11 26 26 H 1.08998 * 113.61245 * 220.02190 * 16 15 13 27 27 H 1.09002 * 113.69003 * 89.12375 * 16 15 13 28 28 H 1.00897 * 111.00152 * 180.02562 * 19 17 13 29 29 H 1.00901 * 111.00316 * 303.95122 * 19 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1504 1.1874 0.0000 4 1 3.1653 1.2250 0.3674 5 6 1.5413 2.3412 -0.4779 6 7 0.3970 2.2628 -1.1191 7 14 2.3492 4.0039 -0.2090 8 1 3.1939 4.3395 -1.3834 9 1 1.3009 5.0421 -0.0403 10 1 3.1951 3.9518 1.0104 11 6 2.1389 -1.1671 -0.0005 12 8 3.3519 -1.1670 -0.0010 13 6 1.3856 -2.4723 -0.0017 14 1 0.6007 -2.5086 0.7538 15 6 0.9189 -2.9129 -1.3992 16 6 1.3050 -4.3443 -0.9906 17 6 2.2978 -3.7102 -0.0028 18 1 3.2830 -3.5262 -0.4315 19 7 2.3579 -4.3980 1.2938 20 1 -0.3633 0.0332 -1.0272 21 1 -0.3632 -0.9062 0.4846 22 1 -0.3634 0.8728 0.5423 23 1 -0.0281 3.0683 -1.4530 24 1 -0.1502 -2.7795 -1.5648 25 1 1.5272 -2.5111 -2.2094 26 1 1.7849 -4.9116 -1.7880 27 1 0.4980 -4.8943 -0.5064 28 1 2.9661 -5.2019 1.2489 29 1 2.6478 -3.7663 2.0253 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160584359.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:10 Heat of formation + Delta-G solvation = -33.090544 kcal Electronic energy + Delta-G solvation = -12996.251211 eV Core-core repulsion = 10726.207896 eV Total energy + Delta-G solvation = -2270.043315 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.11467 -38.63623 -36.58086 -33.68780 -32.77973 -28.78924 -27.52906 -25.78371 -24.72738 -21.54264 -19.89521 -18.92335 -18.12042 -16.90576 -16.46264 -16.29294 -15.92904 -15.64452 -15.00775 -14.17867 -13.76951 -13.65529 -13.25194 -13.09009 -12.71222 -12.49836 -12.39527 -12.18614 -12.09537 -11.74836 -11.30897 -11.04283 -10.23077 -9.69572 -9.69015 -8.34155 -6.01215 1.35260 1.38754 1.51943 2.00656 2.26407 3.06174 3.07307 3.59196 3.70186 3.83759 3.94118 4.08773 4.25538 4.67234 4.72984 4.81160 4.93534 5.04392 5.07095 5.27500 5.38237 5.41711 5.45925 6.07971 6.20397 6.47496 6.58159 7.15255 7.47365 8.03552 8.67299 Molecular weight = 198.11amu Principal moments of inertia in cm(-1) A = 0.063217 B = 0.009873 C = 0.009129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 442.815395 B = 2835.321997 C = 3066.477932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.126 3.874 2 N -0.460 5.460 3 C -0.349 4.349 4 H 0.068 0.932 5 C -0.002 4.002 6 N -0.896 5.896 7 Si 0.990 3.010 8 H -0.276 1.276 9 H -0.265 1.265 10 H -0.272 1.272 11 C 0.441 3.559 12 O -0.641 6.641 13 C -0.118 4.118 14 H 0.120 0.880 15 C -0.120 4.120 16 C -0.105 4.105 17 C 0.079 3.921 18 H 0.044 0.956 19 N -0.831 5.831 20 H 0.047 0.953 21 H 0.065 0.935 22 H 0.050 0.950 23 H 0.274 0.726 24 H 0.093 0.907 25 H 0.060 0.940 26 H 0.080 0.920 27 H 0.107 0.893 28 H 0.349 0.651 29 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.073 -8.566 1.231 9.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.017 4.017 2 N -0.178 5.178 3 C -0.477 4.477 4 H 0.086 0.914 5 C -0.204 4.204 6 N -0.535 5.535 7 Si 0.814 3.186 8 H -0.202 1.202 9 H -0.189 1.189 10 H -0.196 1.196 11 C 0.231 3.769 12 O -0.529 6.529 13 C -0.139 4.139 14 H 0.137 0.863 15 C -0.158 4.158 16 C -0.143 4.143 17 C -0.033 4.033 18 H 0.062 0.938 19 N -0.360 5.360 20 H 0.066 0.934 21 H 0.084 0.916 22 H 0.069 0.931 23 H 0.084 0.916 24 H 0.111 0.889 25 H 0.079 0.921 26 H 0.099 0.901 27 H 0.125 0.875 28 H 0.162 0.838 29 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -3.456 -8.519 1.046 9.253 hybrid contribution 1.526 1.461 0.003 2.113 sum -1.929 -7.058 1.048 7.392 Atomic orbital electron populations 1.21417 0.79312 0.99814 1.01142 1.43861 1.06801 1.04662 1.62447 1.19635 0.99651 0.86285 1.42177 0.91387 1.26108 0.97003 1.02901 0.94372 1.70062 1.17901 1.30589 1.34907 0.84981 0.78086 0.76987 0.78591 1.20177 1.18921 1.19634 1.21044 0.87779 0.86336 0.81697 1.90438 1.16325 1.88120 1.58064 1.22789 0.99482 0.90436 1.01216 0.86252 1.22652 1.02195 0.97137 0.93846 1.22865 0.98839 0.95048 0.97503 1.22635 0.96369 0.92795 0.91526 0.93787 1.59016 1.59809 1.12212 1.04965 0.93409 0.91622 0.93142 0.91645 0.88860 0.92129 0.90095 0.87462 0.83802 0.84846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 5.74 8.52 127.77 1.09 6.82 15 2 N -0.46 -24.64 3.02 -658.88 -1.99 -26.63 15 3 C -0.35 -20.56 9.27 84.04 0.78 -19.78 15 4 H 0.07 4.28 7.42 -2.91 -0.02 4.26 15 5 C 0.00 -0.11 5.13 84.93 0.44 0.32 15 6 N -0.90 -48.27 10.63 21.66 0.23 -48.04 15 7 Si 0.99 43.29 29.57 68.60 2.03 45.32 15 8 H -0.28 -11.95 7.11 99.48 0.71 -11.24 15 9 H -0.26 -10.76 7.11 99.48 0.71 -10.05 15 10 H -0.27 -11.87 7.11 99.48 0.71 -11.16 15 11 C 0.44 22.44 7.15 87.66 0.63 23.07 15 12 O -0.64 -37.63 15.60 -3.08 -0.05 -37.68 15 13 C -0.12 -4.39 2.73 -11.01 -0.03 -4.42 15 14 H 0.12 4.07 6.94 -2.39 -0.02 4.05 15 15 C -0.12 -3.80 7.61 31.12 0.24 -3.57 15 16 C -0.10 -2.71 7.88 31.11 0.25 -2.47 15 17 C 0.08 2.58 4.28 45.43 0.19 2.77 15 18 H 0.04 1.71 7.43 -2.38 -0.02 1.69 15 19 N -0.83 -22.71 9.57 -166.55 -1.59 -24.30 15 20 H 0.05 2.24 7.54 -2.38 -0.02 2.22 15 21 H 0.07 2.42 6.14 -2.39 -0.01 2.41 15 22 H 0.05 2.42 7.08 -2.39 -0.02 2.40 15 23 H 0.27 13.74 8.31 -92.70 -0.77 12.97 15 24 H 0.09 2.57 8.14 -2.38 -0.02 2.55 15 25 H 0.06 2.18 8.09 -2.39 -0.02 2.17 15 26 H 0.08 1.83 8.14 -2.39 -0.02 1.81 15 27 H 0.11 2.40 8.14 -2.39 -0.02 2.38 15 28 H 0.35 7.81 9.08 -89.70 -0.81 6.99 15 29 H 0.34 9.81 9.07 -89.69 -0.81 9.00 15 Total: -1.00 -67.85 243.80 1.74 -66.10 By element: Atomic # 1 Polarization: 22.92 SS G_CDS: -0.46 Total: 22.46 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: 3.58 Total: 2.76 kcal Atomic # 7 Polarization: -95.62 SS G_CDS: -3.35 Total: -98.97 kcal Atomic # 8 Polarization: -37.63 SS G_CDS: -0.05 Total: -37.68 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -67.85 1.74 -66.10 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160584359.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.014 kcal (2) G-P(sol) polarization free energy of solvation -67.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds