Wall clock time and date at job start Sun Mar 29 2020 21:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.46866 * 2 1 4 4 C 1.52999 * 109.47000 * 240.00185 * 2 1 3 5 5 C 1.53006 * 109.46626 * 180.02562 * 4 2 1 6 6 C 1.52997 * 109.47164 * 59.99702 * 5 4 2 7 7 H 1.09001 * 109.47230 * 179.97438 * 6 5 4 8 8 C 1.53002 * 109.46978 * 60.00126 * 6 5 4 9 9 C 1.53002 * 109.47415 * 300.00027 * 6 5 4 10 10 H 1.08996 * 109.46550 * 300.00288 * 9 6 5 11 11 O 1.42898 * 109.47113 * 180.02562 * 9 6 5 12 12 C 1.34924 * 116.99705 * 149.99905 * 11 9 6 13 13 H 1.07997 * 120.00326 * 359.97438 * 12 11 9 14 14 C 1.38642 * 119.99789 * 179.97438 * 12 11 9 15 15 N 1.31576 * 119.99891 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 119.99765 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47414 * 60.00009 * 16 14 12 18 18 H 1.48503 * 109.46964 * 179.97438 * 16 14 12 19 19 H 1.48507 * 109.47114 * 299.99803 * 16 14 12 20 20 C 1.52996 * 109.46972 * 59.99860 * 9 6 5 21 21 H 1.09000 * 109.46866 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47372 * 300.00408 * 1 2 3 23 23 H 1.09004 * 109.47107 * 60.00109 * 1 2 3 24 24 H 1.08993 * 109.47839 * 60.00073 * 4 2 1 25 25 H 1.09000 * 109.47160 * 299.99635 * 4 2 1 26 26 H 1.09001 * 109.46998 * 179.97438 * 5 4 2 27 27 H 1.09000 * 109.47050 * 299.99699 * 5 4 2 28 28 H 1.09001 * 109.47600 * 60.00041 * 8 6 5 29 29 H 1.09004 * 109.47006 * 179.97438 * 8 6 5 30 30 H 1.09002 * 109.47097 * 299.99801 * 8 6 5 31 31 H 0.97000 * 120.00011 * 180.02562 * 15 14 12 32 32 H 1.09000 * 109.47054 * 60.00300 * 20 9 6 33 33 H 1.09001 * 109.46997 * 180.02562 * 20 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5701 -0.7217 -1.2489 6 6 4.0795 -1.4433 0.0004 7 1 5.1695 -1.4440 0.0005 8 6 3.5690 -2.8856 0.0000 9 6 3.5695 -0.7221 1.2497 10 1 3.9331 0.3054 1.2498 11 8 4.0458 -1.3957 2.4164 12 6 4.2499 -0.6433 3.5176 13 1 4.0542 0.4184 3.4901 14 6 4.7109 -1.2332 4.6845 15 7 4.9498 -2.5267 4.7179 16 14 4.9928 -0.1917 6.2093 17 1 3.7165 0.4515 6.6125 18 1 5.4825 -1.0543 7.3144 19 1 6.0031 0.8558 5.9134 20 6 2.0395 -0.7216 1.2493 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.6768 -0.2075 -2.1392 25 1 1.6767 -1.7489 -1.2493 26 1 3.9335 -1.2359 -2.1386 27 1 3.9338 0.3058 -1.2486 28 1 3.9324 -3.3995 -0.8899 29 1 3.9324 -3.3999 0.8898 30 1 2.4790 -2.8853 -0.0002 31 1 5.2720 -2.9395 5.5344 32 1 1.6758 -1.7491 1.2490 33 1 1.6761 -0.2074 2.1390 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224378086.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:22 Heat of formation + Delta-G solvation = -86.645793 kcal Electronic energy + Delta-G solvation = -13367.980509 eV Core-core repulsion = 11199.155208 eV Total energy + Delta-G solvation = -2168.825301 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.46859 -37.41419 -34.32842 -33.67146 -30.65967 -28.79689 -26.78491 -26.01172 -23.20062 -21.74414 -19.81180 -19.37252 -17.37597 -16.45780 -15.97346 -15.64689 -15.42289 -14.89812 -14.18168 -13.96616 -13.79316 -13.37275 -13.26048 -12.83743 -12.79351 -12.65732 -12.37240 -12.19773 -11.98765 -11.76068 -11.64209 -11.32028 -10.96001 -10.93039 -10.75807 -10.03099 -8.15015 -5.82365 1.36991 1.44648 1.51525 2.33379 3.16911 3.62191 3.82589 3.87075 4.14909 4.24385 4.35976 4.49149 4.56041 4.63977 4.66304 4.78842 4.81290 4.95952 5.04606 5.07893 5.08956 5.14518 5.22049 5.26480 5.29507 5.36446 5.51121 5.56326 5.59426 5.73079 6.23815 7.28211 8.13883 9.09736 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.045532 B = 0.010002 C = 0.008986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.805995 B = 2798.773708 C = 3115.139715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.087 4.087 3 H 0.065 0.935 4 C -0.109 4.109 5 C -0.103 4.103 6 C -0.087 4.087 7 H 0.049 0.951 8 C -0.132 4.132 9 C 0.092 3.908 10 H 0.024 0.976 11 O -0.325 6.325 12 C -0.370 4.370 13 H 0.065 0.935 14 C -0.044 4.044 15 N -0.939 5.939 16 Si 1.000 3.000 17 H -0.266 1.266 18 H -0.279 1.279 19 H -0.265 1.265 20 C -0.124 4.124 21 H 0.053 0.947 22 H 0.046 0.954 23 H 0.075 0.925 24 H 0.087 0.913 25 H 0.066 0.934 26 H 0.085 0.915 27 H 0.062 0.938 28 H 0.069 0.931 29 H 0.023 0.977 30 H 0.062 0.938 31 H 0.259 0.741 32 H 0.054 0.946 33 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.446 5.123 -11.436 14.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.105 4.105 3 H 0.084 0.916 4 C -0.147 4.147 5 C -0.141 4.141 6 C -0.105 4.105 7 H 0.067 0.933 8 C -0.189 4.189 9 C 0.033 3.967 10 H 0.042 0.958 11 O -0.241 6.241 12 C -0.449 4.449 13 H 0.082 0.918 14 C -0.237 4.237 15 N -0.585 5.585 16 Si 0.822 3.178 17 H -0.191 1.191 18 H -0.204 1.204 19 H -0.190 1.190 20 C -0.162 4.162 21 H 0.073 0.927 22 H 0.066 0.934 23 H 0.094 0.906 24 H 0.105 0.895 25 H 0.085 0.915 26 H 0.103 0.897 27 H 0.081 0.919 28 H 0.088 0.912 29 H 0.042 0.958 30 H 0.081 0.919 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -6.366 4.813 -11.347 13.872 hybrid contribution 0.357 0.409 1.208 1.325 sum -6.009 5.223 -10.138 12.891 Atomic orbital electron populations 1.21784 0.93927 1.01980 1.02077 1.21111 0.96465 0.99005 0.93956 0.91641 1.21629 0.94692 1.01107 0.97232 1.21521 0.96455 1.00180 0.95924 1.21155 0.99053 0.96315 0.94000 0.93282 1.21699 1.01211 0.95472 1.00498 1.22089 0.93518 0.94053 0.87013 0.95804 1.85611 1.84380 1.35722 1.18341 1.21273 1.42629 0.91210 0.89750 0.91780 1.26143 0.98702 0.97498 1.01331 1.70185 1.48499 1.11418 1.28367 0.84910 0.78929 0.77289 0.76676 1.19067 1.20352 1.19006 1.22027 0.95986 1.00325 0.97815 0.92748 0.93439 0.90595 0.89483 0.91495 0.89666 0.91907 0.91221 0.95814 0.91878 0.93262 0.92727 0.94696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.30 9.19 71.98 0.66 -2.63 16 2 C -0.09 -2.47 2.72 -10.79 -0.03 -2.50 16 3 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 4 C -0.11 -2.64 4.93 30.60 0.15 -2.49 16 5 C -0.10 -2.79 5.45 30.60 0.17 -2.62 16 6 C -0.09 -3.26 2.94 -10.79 -0.03 -3.29 16 7 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 8 C -0.13 -4.84 8.35 71.98 0.60 -4.24 16 9 C 0.09 4.18 2.33 30.59 0.07 4.25 16 10 H 0.02 1.11 7.80 -2.39 -0.02 1.09 16 11 O -0.32 -19.44 8.75 -81.93 -0.72 -20.16 16 12 C -0.37 -22.62 9.77 67.92 0.66 -21.95 16 13 H 0.06 3.71 7.64 -2.91 -0.02 3.68 16 14 C -0.04 -2.68 5.49 84.83 0.47 -2.22 16 15 N -0.94 -61.50 13.67 21.61 0.30 -61.20 16 16 Si 1.00 46.61 29.55 68.60 2.03 48.64 16 17 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 18 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 19 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 20 C -0.12 -4.87 4.55 30.59 0.14 -4.73 16 21 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 22 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 23 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 24 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 25 H 0.07 1.62 6.43 -2.39 -0.02 1.60 16 26 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 27 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 29 H 0.02 1.06 7.68 -2.38 -0.02 1.04 16 30 H 0.06 2.16 4.81 -2.39 -0.01 2.14 16 31 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 32 H 0.05 2.23 6.43 -2.39 -0.02 2.21 16 33 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -71.57 259.55 5.52 -66.05 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: 1.05 Total: 9.10 kcal Atomic # 6 Polarization: -45.29 SS G_CDS: 2.86 Total: -42.43 kcal Atomic # 7 Polarization: -61.50 SS G_CDS: 0.30 Total: -61.20 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: -0.72 Total: -20.16 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.64 kcal Total: -71.57 5.52 -66.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224378086.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.593 kcal (2) G-P(sol) polarization free energy of solvation -71.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds