Wall clock time and date at job start Sun Mar 29 2020 21:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47269 * 2 1 4 4 C 1.52997 * 109.47232 * 239.99603 * 2 1 3 5 5 C 1.53002 * 109.46817 * 300.00239 * 4 2 1 6 6 C 1.52996 * 109.46972 * 299.99733 * 5 4 2 7 7 C 1.52997 * 109.47131 * 60.00459 * 6 5 4 8 8 H 1.08993 * 109.47194 * 60.00154 * 7 6 5 9 9 O 1.42905 * 109.46915 * 179.97438 * 7 6 5 10 10 C 1.34932 * 116.99538 * 269.99768 * 9 7 6 11 11 H 1.08000 * 120.00277 * 0.02562 * 10 9 7 12 12 C 1.38639 * 119.99737 * 180.02562 * 10 9 7 13 13 N 1.31583 * 119.99847 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 120.00014 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.47158 * 0.02562 * 14 12 10 16 16 H 1.48506 * 109.47030 * 119.99914 * 14 12 10 17 17 H 1.48498 * 109.47454 * 240.00074 * 14 12 10 18 18 C 1.52999 * 109.46991 * 299.99311 * 7 6 5 19 19 H 1.09000 * 109.47140 * 300.00547 * 1 2 3 20 20 H 1.09001 * 109.47230 * 59.99691 * 1 2 3 21 21 H 1.09001 * 109.47375 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47362 * 180.02562 * 3 2 1 23 23 H 1.09002 * 109.46716 * 299.99747 * 3 2 1 24 24 H 1.09000 * 109.47486 * 59.99665 * 3 2 1 25 25 H 1.09002 * 109.47153 * 60.00008 * 4 2 1 26 26 H 1.08996 * 109.46952 * 180.02562 * 4 2 1 27 27 H 1.08996 * 109.47407 * 60.00219 * 5 4 2 28 28 H 1.09000 * 109.46986 * 179.97438 * 5 4 2 29 29 H 1.09001 * 109.46993 * 180.02562 * 6 5 4 30 30 H 1.09000 * 109.47380 * 299.99696 * 6 5 4 31 31 H 0.97007 * 119.99961 * 180.02562 * 13 12 10 32 32 H 1.08993 * 109.47839 * 300.00447 * 18 7 6 33 33 H 1.09000 * 109.47160 * 180.02562 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5299 -2.1638 -1.2490 6 6 2.0399 -2.8849 0.0002 7 6 1.5299 -2.1636 1.2494 8 1 0.4400 -2.1637 1.2494 9 8 2.0058 -2.8376 2.4162 10 6 1.2278 -3.8202 2.9161 11 1 0.2924 -4.0657 2.4354 12 6 1.6293 -4.5146 4.0469 13 7 2.7688 -4.2152 4.6328 14 14 0.5520 -5.8745 4.7393 15 1 -0.6675 -6.0139 3.9036 16 1 1.3051 -7.1545 4.7326 17 1 0.1624 -5.5367 6.1319 18 6 2.0400 -0.7212 1.2494 19 1 -0.3633 0.5139 0.8899 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3634 -1.0277 0.0005 22 1 3.1300 1.4425 -0.0005 23 1 1.6767 1.9562 -0.8900 24 1 1.6767 1.9564 0.8899 25 1 1.6767 -0.2075 -2.1392 26 1 3.1300 -0.7217 -1.2489 27 1 0.4399 -2.1638 -1.2491 28 1 1.8929 -2.6776 -2.1392 29 1 1.6769 -3.9127 0.0001 30 1 3.1299 -2.8850 0.0002 31 1 3.0499 -4.7013 5.4238 32 1 3.1299 -0.7211 1.2493 33 1 1.6770 -0.2074 2.1395 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224381514.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:18 Heat of formation + Delta-G solvation = -66.503791 kcal Electronic energy + Delta-G solvation = -13314.779407 eV Core-core repulsion = 11146.827529 eV Total energy + Delta-G solvation = -2167.951879 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.13278 -35.78104 -32.42646 -31.53047 -29.06857 -27.09496 -25.91310 -24.38438 -21.77095 -20.40260 -18.13988 -17.24922 -15.56408 -14.53768 -14.40101 -14.08928 -13.80504 -13.41696 -13.07542 -12.39224 -12.26862 -11.89066 -11.59079 -11.41510 -11.24034 -11.05311 -10.87817 -10.60325 -10.47816 -10.26763 -10.12986 -10.04892 -9.47542 -9.20120 -8.90137 -7.88743 -5.88521 -3.50772 3.33625 3.36925 3.41236 4.35068 4.98047 5.00412 5.11873 5.40360 5.52619 5.58413 5.72410 5.80115 5.84798 5.92112 6.00286 6.05914 6.10254 6.18449 6.20099 6.31072 6.34054 6.40560 6.54252 6.63663 6.74402 6.79357 6.96235 7.10918 7.17177 7.53899 8.49950 9.55351 10.27283 11.32860 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.055352 B = 0.008947 C = 0.008650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.735601 B = 3128.621263 C = 3236.058068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.063 4.063 3 C -0.138 4.138 4 C -0.105 4.105 5 C -0.118 4.118 6 C -0.138 4.138 7 C 0.099 3.901 8 H 0.040 0.960 9 O -0.290 6.290 10 C -0.353 4.353 11 H 0.061 0.939 12 C 0.020 3.980 13 N -0.890 5.890 14 Si 0.921 3.079 15 H -0.275 1.275 16 H -0.283 1.283 17 H -0.283 1.283 18 C -0.101 4.101 19 H 0.052 0.948 20 H 0.047 0.953 21 H 0.063 0.937 22 H 0.053 0.947 23 H 0.049 0.951 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.256 0.744 32 H 0.062 0.938 33 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.271 7.264 -10.285 13.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.063 4.063 3 C -0.196 4.196 4 C -0.143 4.143 5 C -0.156 4.156 6 C -0.176 4.176 7 C 0.040 3.960 8 H 0.058 0.942 9 O -0.204 6.204 10 C -0.432 4.432 11 H 0.079 0.921 12 C -0.178 4.178 13 N -0.534 5.534 14 Si 0.749 3.251 15 H -0.200 1.200 16 H -0.210 1.210 17 H -0.210 1.210 18 C -0.139 4.139 19 H 0.071 0.929 20 H 0.066 0.934 21 H 0.081 0.919 22 H 0.072 0.928 23 H 0.068 0.932 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.081 0.919 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.006 7.265 -10.063 12.770 hybrid contribution -0.698 -0.820 0.258 1.107 sum -3.704 6.445 -9.804 12.304 Atomic orbital electron populations 1.21974 0.95044 1.02210 1.00902 1.20508 0.95514 0.94733 0.95580 1.21843 1.00888 0.95656 1.01164 1.21578 1.00453 0.95627 0.96619 1.21562 1.00571 0.95400 0.98029 1.22079 1.01178 0.99614 0.94742 1.21743 0.96276 0.90880 0.87131 0.94242 1.85671 1.46150 1.49371 1.39256 1.20907 1.01447 1.11354 1.09538 0.92138 1.24935 0.97048 0.98937 0.96879 1.70035 1.20965 1.41565 1.20826 0.85948 0.79313 0.80962 0.78898 1.20000 1.20970 1.20962 1.21578 1.00937 0.95292 0.96080 0.92854 0.93385 0.91859 0.92796 0.93167 0.92754 0.92733 0.92150 0.92200 0.92801 0.92174 0.92150 0.93416 0.91893 0.91968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 7.78 37.16 0.29 -1.73 16 2 C -0.06 -0.93 0.77 -154.51 -0.12 -1.05 16 3 C -0.14 -1.74 8.47 37.16 0.31 -1.43 16 4 C -0.11 -1.47 4.73 -26.73 -0.13 -1.60 16 5 C -0.12 -1.80 5.65 -26.73 -0.15 -1.95 16 6 C -0.14 -2.72 5.54 -26.73 -0.15 -2.87 16 7 C 0.10 2.21 2.38 -26.73 -0.06 2.14 16 8 H 0.04 0.88 6.09 -51.93 -0.32 0.56 16 9 O -0.29 -8.45 9.43 -16.52 -0.16 -8.60 16 10 C -0.35 -10.54 9.77 30.88 0.30 -10.24 16 11 H 0.06 1.71 7.64 -52.49 -0.40 1.31 16 12 C 0.02 0.59 5.49 -17.51 -0.10 0.49 16 13 N -0.89 -28.46 13.67 55.48 0.76 -27.70 16 14 Si 0.92 22.50 29.55 -169.99 -5.02 17.47 16 15 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 16 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 17 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 18 C -0.10 -1.93 4.38 -26.73 -0.12 -2.04 16 19 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 20 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 21 H 0.06 0.95 4.81 -51.93 -0.25 0.70 16 22 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 27 H 0.06 0.88 6.43 -51.93 -0.33 0.55 16 28 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 32 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 LS Contribution 259.92 15.07 3.92 3.92 Total: -1.00 -32.41 259.92 -5.93 -38.34 By element: Atomic # 1 Polarization: 2.36 SS G_CDS: -5.51 Total: -3.15 kcal Atomic # 6 Polarization: -20.36 SS G_CDS: 0.08 Total: -20.27 kcal Atomic # 7 Polarization: -28.46 SS G_CDS: 0.76 Total: -27.70 kcal Atomic # 8 Polarization: -8.45 SS G_CDS: -0.16 Total: -8.60 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -32.41 -5.93 -38.34 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224381514.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.164 kcal (2) G-P(sol) polarization free energy of solvation -32.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds