Wall clock time and date at job start Sun Mar 29 2020 21:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47269 * 2 1 4 4 C 1.52997 * 109.47232 * 239.99603 * 2 1 3 5 5 C 1.53002 * 109.46817 * 300.00239 * 4 2 1 6 6 C 1.52996 * 109.46972 * 299.99733 * 5 4 2 7 7 C 1.52997 * 109.47131 * 60.00459 * 6 5 4 8 8 H 1.08993 * 109.47194 * 60.00154 * 7 6 5 9 9 O 1.42905 * 109.46915 * 179.97438 * 7 6 5 10 10 C 1.34932 * 116.99538 * 269.99768 * 9 7 6 11 11 H 1.08000 * 120.00277 * 0.02562 * 10 9 7 12 12 C 1.38639 * 119.99737 * 180.02562 * 10 9 7 13 13 N 1.31583 * 119.99847 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 120.00014 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.47158 * 0.02562 * 14 12 10 16 16 H 1.48506 * 109.47030 * 119.99914 * 14 12 10 17 17 H 1.48498 * 109.47454 * 240.00074 * 14 12 10 18 18 C 1.52999 * 109.46991 * 299.99311 * 7 6 5 19 19 H 1.09000 * 109.47140 * 300.00547 * 1 2 3 20 20 H 1.09001 * 109.47230 * 59.99691 * 1 2 3 21 21 H 1.09001 * 109.47375 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47362 * 180.02562 * 3 2 1 23 23 H 1.09002 * 109.46716 * 299.99747 * 3 2 1 24 24 H 1.09000 * 109.47486 * 59.99665 * 3 2 1 25 25 H 1.09002 * 109.47153 * 60.00008 * 4 2 1 26 26 H 1.08996 * 109.46952 * 180.02562 * 4 2 1 27 27 H 1.08996 * 109.47407 * 60.00219 * 5 4 2 28 28 H 1.09000 * 109.46986 * 179.97438 * 5 4 2 29 29 H 1.09001 * 109.46993 * 180.02562 * 6 5 4 30 30 H 1.09000 * 109.47380 * 299.99696 * 6 5 4 31 31 H 0.97007 * 119.99961 * 180.02562 * 13 12 10 32 32 H 1.08993 * 109.47839 * 300.00447 * 18 7 6 33 33 H 1.09000 * 109.47160 * 180.02562 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5299 -2.1638 -1.2490 6 6 2.0399 -2.8849 0.0002 7 6 1.5299 -2.1636 1.2494 8 1 0.4400 -2.1637 1.2494 9 8 2.0058 -2.8376 2.4162 10 6 1.2278 -3.8202 2.9161 11 1 0.2924 -4.0657 2.4354 12 6 1.6293 -4.5146 4.0469 13 7 2.7688 -4.2152 4.6328 14 14 0.5520 -5.8745 4.7393 15 1 -0.6675 -6.0139 3.9036 16 1 1.3051 -7.1545 4.7326 17 1 0.1624 -5.5367 6.1319 18 6 2.0400 -0.7212 1.2494 19 1 -0.3633 0.5139 0.8899 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3634 -1.0277 0.0005 22 1 3.1300 1.4425 -0.0005 23 1 1.6767 1.9562 -0.8900 24 1 1.6767 1.9564 0.8899 25 1 1.6767 -0.2075 -2.1392 26 1 3.1300 -0.7217 -1.2489 27 1 0.4399 -2.1638 -1.2491 28 1 1.8929 -2.6776 -2.1392 29 1 1.6769 -3.9127 0.0001 30 1 3.1299 -2.8850 0.0002 31 1 3.0499 -4.7013 5.4238 32 1 3.1299 -0.7211 1.2493 33 1 1.6770 -0.2074 2.1395 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224381514.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:18 Heat of formation + Delta-G solvation = -86.882047 kcal Electronic energy + Delta-G solvation = -13315.663075 eV Core-core repulsion = 11146.827529 eV Total energy + Delta-G solvation = -2168.835546 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.57091 -37.72131 -34.13512 -33.39572 -30.70409 -28.18432 -27.20602 -26.63633 -23.21020 -21.94367 -19.92481 -18.96920 -17.50726 -16.17224 -15.99438 -15.57539 -15.26532 -14.94939 -14.57705 -14.18134 -13.63461 -13.36345 -13.16248 -12.87643 -12.75739 -12.59709 -12.36726 -12.20624 -12.07490 -11.81223 -11.58976 -11.47862 -11.09005 -10.91612 -10.73923 -10.06966 -8.16652 -5.84746 1.37300 1.43225 1.53773 2.32576 3.15780 3.54631 3.76996 3.88033 4.16460 4.27088 4.38706 4.42873 4.45515 4.57221 4.74125 4.74783 4.88325 4.93740 5.03058 5.08607 5.10696 5.15723 5.17776 5.22100 5.28788 5.36469 5.43299 5.53060 5.55474 5.68396 6.22859 7.26584 8.11789 9.08870 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.055352 B = 0.008947 C = 0.008650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.735601 B = 3128.621263 C = 3236.058068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.059 4.059 3 C -0.135 4.135 4 C -0.103 4.103 5 C -0.110 4.110 6 C -0.133 4.133 7 C 0.088 3.912 8 H 0.037 0.963 9 O -0.336 6.336 10 C -0.366 4.366 11 H 0.068 0.932 12 C -0.047 4.047 13 N -0.942 5.942 14 Si 1.003 2.997 15 H -0.258 1.258 16 H -0.276 1.276 17 H -0.275 1.275 18 C -0.096 4.096 19 H 0.048 0.952 20 H 0.078 0.922 21 H 0.048 0.952 22 H 0.053 0.947 23 H 0.077 0.923 24 H 0.051 0.949 25 H 0.089 0.911 26 H 0.058 0.942 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.040 0.960 30 H 0.046 0.954 31 H 0.259 0.741 32 H 0.048 0.952 33 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.612 7.720 -11.999 14.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.059 4.059 3 C -0.192 4.192 4 C -0.140 4.140 5 C -0.147 4.147 6 C -0.171 4.171 7 C 0.030 3.970 8 H 0.055 0.945 9 O -0.252 6.252 10 C -0.445 4.445 11 H 0.085 0.915 12 C -0.240 4.240 13 N -0.587 5.587 14 Si 0.825 3.175 15 H -0.181 1.181 16 H -0.201 1.201 17 H -0.201 1.201 18 C -0.134 4.134 19 H 0.067 0.933 20 H 0.097 0.903 21 H 0.066 0.934 22 H 0.072 0.928 23 H 0.096 0.904 24 H 0.070 0.930 25 H 0.108 0.892 26 H 0.077 0.923 27 H 0.087 0.913 28 H 0.095 0.905 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -4.357 7.740 -11.807 14.775 hybrid contribution -0.260 -0.906 0.754 1.207 sum -4.617 6.834 -11.053 13.791 Atomic orbital electron populations 1.21965 0.94193 1.01639 1.02224 1.20520 0.96170 0.95714 0.93524 1.21812 1.00953 0.93980 1.02446 1.21598 1.00477 0.94604 0.97315 1.21531 1.01056 0.96104 0.96054 1.21983 1.00214 0.98916 0.95967 1.22121 0.96322 0.92419 0.86146 0.94501 1.85596 1.47609 1.49839 1.42134 1.21354 1.01724 1.11587 1.09861 0.91465 1.26215 0.98752 1.01882 0.97116 1.70211 1.23383 1.43486 1.21662 0.84733 0.77631 0.76950 0.78186 1.18148 1.20123 1.20082 1.21586 0.99997 0.93621 0.98212 0.93335 0.90303 0.93351 0.92784 0.90394 0.92981 0.89217 0.92280 0.91329 0.90539 0.94132 0.93548 0.93216 0.93289 0.93690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.67 7.78 71.98 0.56 -3.11 16 2 C -0.06 -1.63 0.77 -52.18 -0.04 -1.67 16 3 C -0.13 -3.03 8.47 71.98 0.61 -2.42 16 4 C -0.10 -2.54 4.73 30.59 0.14 -2.39 16 5 C -0.11 -3.12 5.65 30.59 0.17 -2.95 16 6 C -0.13 -5.29 5.54 30.59 0.17 -5.12 16 7 C 0.09 4.04 2.38 30.59 0.07 4.11 16 8 H 0.04 1.69 6.09 -2.39 -0.01 1.67 16 9 O -0.34 -20.46 9.43 -82.01 -0.77 -21.23 16 10 C -0.37 -22.48 9.77 67.92 0.66 -21.82 16 11 H 0.07 3.88 7.64 -2.91 -0.02 3.86 16 12 C -0.05 -2.89 5.49 84.83 0.47 -2.42 16 13 N -0.94 -62.03 13.67 21.61 0.30 -61.73 16 14 Si 1.00 46.60 29.55 68.60 2.03 48.62 16 15 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 16 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 17 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 18 C -0.10 -3.74 4.38 30.60 0.13 -3.61 16 19 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 20 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 21 H 0.05 1.37 4.81 -2.39 -0.01 1.36 16 22 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 23 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 24 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.07 1.85 6.43 -2.39 -0.02 1.83 16 28 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.26 15.82 8.31 -92.70 -0.77 15.05 16 32 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -72.34 259.92 5.56 -66.78 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: 1.05 Total: 8.96 kcal Atomic # 6 Polarization: -44.36 SS G_CDS: 2.95 Total: -41.40 kcal Atomic # 7 Polarization: -62.03 SS G_CDS: 0.30 Total: -61.73 kcal Atomic # 8 Polarization: -20.46 SS G_CDS: -0.77 Total: -21.23 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 2.03 Total: 48.62 kcal Total: -72.34 5.56 -66.78 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224381514.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.101 kcal (2) G-P(sol) polarization free energy of solvation -72.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds