Wall clock time and date at job start Sun Mar 29 2020 22:01:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30678 * 1 3 3 Si 1.86794 * 119.99949 * 2 1 4 4 H 1.48496 * 109.47341 * 0.02562 * 3 2 1 5 5 H 1.48510 * 109.46748 * 120.00672 * 3 2 1 6 6 H 1.48498 * 109.47206 * 240.00348 * 3 2 1 7 7 C 1.40055 * 119.99845 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99784 * 179.97438 * 7 2 1 9 9 C 1.46374 * 119.99881 * 359.97438 * 7 2 1 10 10 O 1.21691 * 120.00342 * 359.97438 * 9 7 2 11 11 N 1.34774 * 119.99951 * 180.02562 * 9 7 2 12 12 C 1.46504 * 120.00240 * 179.97438 * 11 9 7 13 13 H 1.09006 * 110.62093 * 31.90971 * 12 11 9 14 14 C 1.54364 * 110.70309 * 268.62894 * 12 11 9 15 15 O 1.45947 * 105.06651 * 223.79086 * 14 12 11 16 16 C 1.34562 * 108.40510 * 32.43846 * 15 14 12 17 17 O 1.20831 * 125.94270 * 146.64192 * 16 15 14 18 18 C 1.51506 * 108.11015 * 326.66311 * 16 15 14 19 19 H 0.97001 * 119.99601 * 359.97438 * 1 2 3 20 20 H 0.97005 * 119.99841 * 359.97438 * 11 9 7 21 21 H 1.09004 * 110.32319 * 342.68181 * 14 12 11 22 22 H 1.08995 * 110.32510 * 104.89386 * 14 12 11 23 23 H 1.08994 * 110.41074 * 261.59364 * 18 16 15 24 24 H 1.09003 * 110.50699 * 139.21422 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 1.2758 2.7464 0.0006 5 1 3.0946 1.6962 1.2125 6 1 3.0944 1.6964 -1.2125 7 6 2.0070 -1.2129 -0.0005 8 1 3.0869 -1.2129 -0.0010 9 6 1.2751 -2.4805 -0.0005 10 8 0.0582 -2.4805 0.0004 11 7 1.9489 -3.6477 -0.0005 12 6 1.2164 -4.9165 0.0000 13 1 0.2742 -4.8161 -0.5389 14 6 0.9740 -5.4061 1.4438 15 8 1.2754 -6.8338 1.4159 16 6 2.2515 -7.0444 0.5139 17 8 3.1166 -7.8847 0.5882 18 6 2.0772 -6.0443 -0.6108 19 1 -0.4849 0.8401 0.0004 20 1 2.9190 -3.6477 -0.0009 21 1 1.6417 -4.8917 2.1350 22 1 -0.0654 -5.2441 1.7290 23 1 1.5591 -6.5047 -1.4520 24 1 3.0444 -5.6545 -0.9284 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001351012396.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:02 Heat of formation + Delta-G solvation = -121.772344 kcal Electronic energy + Delta-G solvation = -12448.489607 eV Core-core repulsion = 9941.049004 eV Total energy + Delta-G solvation = -2507.440603 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 199.068 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.71005 -37.74283 -36.93115 -33.93795 -32.51381 -30.21907 -27.68745 -26.17997 -21.97864 -21.09942 -19.86384 -17.67191 -16.69167 -16.46899 -16.13989 -15.42540 -14.85580 -14.19287 -13.50454 -13.12930 -12.96149 -12.45726 -12.40590 -11.52308 -11.45544 -11.24448 -11.03710 -10.61187 -10.42107 -10.35686 -10.05906 -8.97823 -7.89447 -7.81253 -6.33496 -4.80372 2.03365 3.08320 3.14082 3.15493 3.56266 3.94699 4.14327 4.35914 4.54254 4.71558 5.03051 5.31671 5.47565 5.64600 5.74806 5.97696 6.19577 6.82608 7.30179 7.51981 7.66255 7.82509 8.14433 8.87963 9.27035 10.41084 10.59430 Molecular weight = 199.07amu Principal moments of inertia in cm(-1) A = 0.078669 B = 0.007956 C = 0.007585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 355.835477 B = 3518.432232 C = 3690.431994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.765 5.765 2 C 0.087 3.913 3 Si 0.911 3.089 4 H -0.280 1.280 5 H -0.267 1.267 6 H -0.267 1.267 7 C -0.544 4.544 8 H 0.069 0.931 9 C 0.552 3.448 10 O -0.577 6.577 11 N -0.756 5.756 12 C 0.128 3.872 13 H 0.110 0.890 14 C 0.041 3.959 15 O -0.359 6.359 16 C 0.489 3.511 17 O -0.462 6.462 18 C -0.196 4.196 19 H 0.271 0.729 20 H 0.385 0.615 21 H 0.087 0.913 22 H 0.114 0.886 23 H 0.118 0.882 24 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.419 -5.373 -0.268 6.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C -0.133 4.133 3 Si 0.735 3.265 4 H -0.205 1.205 5 H -0.192 1.192 6 H -0.192 1.192 7 C -0.581 4.581 8 H 0.087 0.913 9 C 0.358 3.642 10 O -0.460 6.460 11 N -0.413 5.413 12 C 0.020 3.980 13 H 0.128 0.872 14 C -0.034 4.034 15 O -0.276 6.276 16 C 0.329 3.671 17 O -0.346 6.346 18 C -0.235 4.235 19 H 0.082 0.918 20 H 0.217 0.783 21 H 0.105 0.895 22 H 0.132 0.868 23 H 0.136 0.864 24 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 2.626 -5.794 -0.095 6.362 hybrid contribution 0.907 0.903 -0.063 1.281 sum 3.532 -4.891 -0.158 6.035 Atomic orbital electron populations 1.69994 1.07090 1.27703 1.34525 1.25718 0.94674 1.00424 0.92507 0.86384 0.79805 0.80774 0.79541 1.20469 1.19214 1.19208 1.20834 0.93688 0.89164 1.54372 0.91255 1.18299 0.87292 0.82273 0.76381 1.90617 1.13924 1.86518 1.54906 1.46312 1.08602 1.03915 1.82461 1.21619 0.97591 0.85079 0.93728 0.87204 1.24869 1.04132 0.74642 0.99789 1.87239 1.51157 1.28964 1.60255 1.23290 0.77745 0.82646 0.83379 1.90669 1.29390 1.36001 1.78520 1.23222 1.04183 0.97067 0.99010 0.91829 0.78266 0.89496 0.86811 0.86400 0.86965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -21.78 11.83 55.55 0.66 -21.12 14 2 C 0.09 2.31 5.50 -17.36 -0.10 2.21 14 3 Si 0.91 19.17 29.56 -169.99 -5.02 14.14 14 4 H -0.28 -5.78 7.11 56.52 0.40 -5.38 14 5 H -0.27 -5.49 7.11 56.52 0.40 -5.09 14 6 H -0.27 -5.49 7.11 56.52 0.40 -5.09 14 7 C -0.54 -14.36 9.54 -35.63 -0.34 -14.70 14 8 H 0.07 1.67 7.85 -52.49 -0.41 1.25 14 9 C 0.55 14.34 7.75 -12.99 -0.10 14.24 14 10 O -0.58 -17.13 14.66 5.20 0.08 -17.06 14 11 N -0.76 -14.86 5.06 -53.77 -0.27 -15.14 14 12 C 0.13 2.11 3.56 -66.44 -0.24 1.88 14 13 H 0.11 1.98 7.55 -51.93 -0.39 1.59 14 14 C 0.04 0.64 7.60 37.87 0.29 0.93 14 15 O -0.36 -5.73 11.17 -39.73 -0.44 -6.17 14 16 C 0.49 7.63 8.50 36.40 0.31 7.94 14 17 O -0.46 -8.36 18.00 -18.32 -0.33 -8.69 14 18 C -0.20 -2.61 6.72 -26.71 -0.18 -2.78 14 19 H 0.27 7.03 8.29 -40.82 -0.34 6.69 14 20 H 0.38 6.61 8.38 -40.82 -0.34 6.27 14 21 H 0.09 1.36 8.02 -51.93 -0.42 0.94 14 22 H 0.11 1.72 8.14 -51.93 -0.42 1.30 14 23 H 0.12 1.32 8.14 -51.93 -0.42 0.90 14 24 H 0.11 1.38 7.71 -51.93 -0.40 0.98 14 LS Contribution 224.84 15.07 3.39 3.39 Total: -1.00 -32.32 224.84 -4.25 -36.57 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -1.94 Total: 4.36 kcal Atomic # 6 Polarization: 10.07 SS G_CDS: -0.35 Total: 9.72 kcal Atomic # 7 Polarization: -36.65 SS G_CDS: 0.38 Total: -36.26 kcal Atomic # 8 Polarization: -31.22 SS G_CDS: -0.70 Total: -31.92 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.02 Total: 14.14 kcal Total LS contribution 3.39 Total: 3.39 kcal Total: -32.32 -4.25 -36.57 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351012396.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.203 kcal (2) G-P(sol) polarization free energy of solvation -32.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds