Wall clock time and date at job start Sun Mar 29 2020 22:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38258 * 120.02332 * 2 1 4 4 C 1.38143 * 119.96364 * 180.23476 * 3 2 1 5 5 C 1.38449 * 120.10356 * 359.52277 * 4 3 2 6 6 C 1.38065 * 119.93194 * 0.25758 * 5 4 3 7 7 C 1.38148 * 120.01921 * 179.77619 * 2 1 3 8 8 C 1.50781 * 108.86152 * 179.97438 * 6 5 4 9 9 N 1.46634 * 107.70246 * 0.02562 * 8 6 5 10 10 C 1.36929 * 126.56839 * 180.02562 * 9 8 6 11 11 H 1.08005 * 120.00070 * 0.02562 * 10 9 8 12 12 C 1.38814 * 120.00426 * 179.97438 * 10 9 8 13 13 N 1.31617 * 119.99648 * 359.97438 * 12 10 9 14 14 Si 1.86806 * 120.00072 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.47141 * 0.02562 * 14 12 10 16 16 H 1.48497 * 109.46759 * 120.00185 * 14 12 10 17 17 H 1.48503 * 109.47043 * 240.00236 * 14 12 10 18 18 C 1.46643 * 106.87045 * 359.97438 * 9 8 6 19 19 H 1.08997 * 109.47844 * 270.22115 * 1 2 3 20 20 H 1.09005 * 109.46770 * 30.22114 * 1 2 3 21 21 H 1.09003 * 109.47260 * 150.21636 * 1 2 3 22 22 H 1.07998 * 120.01283 * 0.03461 * 3 2 1 23 23 H 1.08002 * 119.95132 * 179.80781 * 4 3 2 24 24 H 1.08002 * 119.94394 * 0.03126 * 7 2 1 25 25 H 1.09000 * 109.81260 * 119.54868 * 8 6 5 26 26 H 1.08998 * 109.81519 * 240.45467 * 8 6 5 27 27 H 0.97001 * 119.99333 * 179.97438 * 13 12 10 28 28 H 1.09002 * 109.80797 * 240.45438 * 18 9 8 29 29 H 1.08999 * 109.81012 * 119.54608 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1987 1.1971 0.0000 4 6 3.5801 1.1956 -0.0049 5 6 4.2733 -0.0028 0.0002 6 6 3.5825 -1.1982 0.0047 7 6 2.1981 -1.1962 0.0047 8 6 4.5740 -2.3342 0.0090 9 7 5.9196 -1.7515 0.0073 10 6 7.1052 -2.4365 0.0096 11 1 7.1049 -3.5166 0.0125 12 6 8.3077 -1.7429 0.0070 13 7 8.3081 -0.4268 0.0019 14 14 9.9251 -2.6776 0.0108 15 1 9.6532 -4.1375 0.0158 16 1 10.7040 -2.3237 -1.2029 17 1 10.7038 -2.3144 1.2221 18 6 5.7525 -0.2946 0.0016 19 1 -0.3635 0.0040 1.0276 20 1 -0.3633 0.8880 -0.5173 21 1 -0.3634 -0.8919 -0.5105 22 1 1.6593 2.1327 0.0006 23 1 4.1203 2.1309 -0.0080 24 1 1.6575 -2.1311 0.0078 25 1 4.4360 -2.9417 0.9034 26 1 4.4360 -2.9484 -0.8807 27 1 9.1484 0.0578 0.0005 28 1 6.2133 0.1265 -0.8921 29 1 6.2124 0.1335 0.8922 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060198373.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:24 Heat of formation + Delta-G solvation = 48.218431 kcal Electronic energy + Delta-G solvation = -12534.964161 eV Core-core repulsion = 10423.413968 eV Total energy + Delta-G solvation = -2111.550192 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 203.101 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.46256 -36.01174 -32.60333 -31.45085 -29.87978 -27.78510 -25.98442 -24.49263 -21.90855 -20.32457 -19.80369 -16.93798 -15.43802 -14.71503 -14.60376 -14.29215 -14.13021 -13.31743 -13.18574 -12.90439 -11.99670 -11.80628 -11.61827 -11.56445 -11.26734 -11.04259 -10.79682 -10.35415 -10.11511 -10.04749 -9.76224 -8.87188 -8.26890 -7.81851 -6.80038 -5.78296 -3.11433 1.87471 1.88433 3.38816 3.43753 3.46761 4.23766 4.44173 5.02464 5.19269 5.37611 5.45915 5.46167 5.63037 5.68517 5.73092 5.96281 6.03275 6.14051 6.29434 6.61535 6.63556 6.66732 6.92726 6.97801 7.17305 7.40330 7.50547 7.61084 7.74296 8.17184 9.14906 9.74778 10.42966 11.35855 Molecular weight = 203.10amu Principal moments of inertia in cm(-1) A = 0.082100 B = 0.008009 C = 0.007346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 340.966444 B = 3495.404607 C = 3810.570850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.108 4.108 3 C -0.125 4.125 4 C -0.108 4.108 5 C -0.097 4.097 6 C -0.103 4.103 7 C -0.105 4.105 8 C 0.175 3.825 9 N -0.601 5.601 10 C -0.225 4.225 11 H 0.084 0.916 12 C -0.008 4.008 13 N -0.923 5.923 14 Si 0.918 3.082 15 H -0.279 1.279 16 H -0.289 1.289 17 H -0.289 1.289 18 C 0.208 3.792 19 H 0.063 0.937 20 H 0.061 0.939 21 H 0.061 0.939 22 H 0.116 0.884 23 H 0.118 0.882 24 H 0.114 0.886 25 H 0.036 0.964 26 H 0.036 0.964 27 H 0.254 0.746 28 H 0.062 0.938 29 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.724 1.581 0.010 11.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.108 4.108 3 C -0.144 4.144 4 C -0.126 4.126 5 C -0.098 4.098 6 C -0.103 4.103 7 C -0.124 4.124 8 C 0.050 3.950 9 N -0.328 5.328 10 C -0.353 4.353 11 H 0.102 0.898 12 C -0.204 4.204 13 N -0.570 5.570 14 Si 0.748 3.252 15 H -0.204 1.204 16 H -0.216 1.216 17 H -0.216 1.216 18 C 0.084 3.916 19 H 0.082 0.918 20 H 0.080 0.920 21 H 0.080 0.920 22 H 0.134 0.866 23 H 0.136 0.864 24 H 0.132 0.868 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.064 0.936 28 H 0.080 0.920 29 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -11.469 1.600 0.009 11.581 hybrid contribution 0.875 -0.349 0.006 0.943 sum -10.594 1.251 0.015 10.668 Atomic orbital electron populations 1.20676 0.91675 1.02118 1.01690 1.19621 0.95407 0.93079 1.02693 1.20787 0.93822 0.97020 1.02723 1.20480 0.93524 0.97110 1.01500 1.21446 0.99094 0.93010 0.96263 1.20718 0.93473 0.96917 0.99235 1.20278 0.92437 0.97227 1.02442 1.19703 0.84412 0.92373 0.98532 1.43974 0.99853 1.01320 1.87629 1.19039 0.81517 0.90508 1.44215 0.89827 1.24842 0.97839 0.95807 1.01943 1.69951 1.25263 1.05001 1.56770 0.85953 0.83291 0.78690 0.77281 1.20374 1.21637 1.21630 1.19687 0.84886 0.85443 1.01624 0.91797 0.92045 0.92013 0.86613 0.86417 0.86814 0.94682 0.94683 0.93569 0.92045 0.92047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.17 10.01 36.00 0.36 -0.81 15 2 C -0.11 -1.65 5.88 -104.65 -0.62 -2.27 15 3 C -0.13 -1.96 9.70 -39.61 -0.38 -2.35 15 4 C -0.11 -1.96 10.05 -39.54 -0.40 -2.36 15 5 C -0.10 -2.10 6.22 -104.57 -0.65 -2.75 15 6 C -0.10 -2.12 6.22 -104.57 -0.65 -2.77 15 7 C -0.11 -1.80 9.70 -39.54 -0.38 -2.18 15 8 C 0.18 3.96 7.25 -5.08 -0.04 3.92 15 9 N -0.60 -16.19 3.41 -175.67 -0.60 -16.79 15 10 C -0.23 -6.40 10.32 -15.06 -0.16 -6.55 15 11 H 0.08 2.27 7.83 -52.48 -0.41 1.85 15 12 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 15 13 N -0.92 -27.28 10.44 55.49 0.58 -26.70 15 14 Si 0.92 22.13 29.55 -169.99 -5.02 17.10 15 15 H -0.28 -6.49 7.11 56.52 0.40 -6.09 15 16 H -0.29 -7.00 7.11 56.52 0.40 -6.60 15 17 H -0.29 -7.00 7.11 56.52 0.40 -6.60 15 18 C 0.21 5.35 5.39 -5.08 -0.03 5.33 15 19 H 0.06 0.65 8.14 -51.93 -0.42 0.23 15 20 H 0.06 0.60 8.09 -51.93 -0.42 0.18 15 21 H 0.06 0.63 8.09 -51.93 -0.42 0.21 15 22 H 0.12 1.46 8.06 -52.49 -0.42 1.04 15 23 H 0.12 1.93 8.06 -52.49 -0.42 1.51 15 24 H 0.11 1.66 8.06 -52.49 -0.42 1.24 15 25 H 0.04 0.77 8.14 -51.93 -0.42 0.35 15 26 H 0.04 0.77 8.14 -51.93 -0.42 0.35 15 27 H 0.25 7.23 8.31 -40.82 -0.34 6.89 15 28 H 0.06 1.72 7.49 -51.93 -0.39 1.33 15 29 H 0.06 1.72 7.49 -51.93 -0.39 1.33 15 LS Contribution 246.85 15.07 3.72 3.72 Total: -1.00 -30.50 246.85 -8.06 -38.56 By element: Atomic # 1 Polarization: 0.91 SS G_CDS: -3.70 Total: -2.79 kcal Atomic # 6 Polarization: -10.08 SS G_CDS: -3.04 Total: -13.11 kcal Atomic # 7 Polarization: -43.46 SS G_CDS: -0.02 Total: -43.48 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -30.50 -8.06 -38.56 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060198373.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.778 kcal (2) G-P(sol) polarization free energy of solvation -30.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds