Wall clock time and date at job start Sun Mar 29 2020 22:07:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38258 * 120.02332 * 2 1 4 4 C 1.38143 * 119.96364 * 180.23476 * 3 2 1 5 5 C 1.38449 * 120.10356 * 359.52277 * 4 3 2 6 6 C 1.38065 * 119.93194 * 0.25758 * 5 4 3 7 7 C 1.38148 * 120.01921 * 179.77619 * 2 1 3 8 8 C 1.50781 * 108.86152 * 179.97438 * 6 5 4 9 9 N 1.46634 * 107.70246 * 0.02562 * 8 6 5 10 10 C 1.36929 * 126.56839 * 180.02562 * 9 8 6 11 11 H 1.08005 * 120.00070 * 0.02562 * 10 9 8 12 12 C 1.38814 * 120.00426 * 179.97438 * 10 9 8 13 13 N 1.31617 * 119.99648 * 359.97438 * 12 10 9 14 14 Si 1.86806 * 120.00072 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.47141 * 0.02562 * 14 12 10 16 16 H 1.48497 * 109.46759 * 120.00185 * 14 12 10 17 17 H 1.48503 * 109.47043 * 240.00236 * 14 12 10 18 18 C 1.46643 * 106.87045 * 359.97438 * 9 8 6 19 19 H 1.08997 * 109.47844 * 270.22115 * 1 2 3 20 20 H 1.09005 * 109.46770 * 30.22114 * 1 2 3 21 21 H 1.09003 * 109.47260 * 150.21636 * 1 2 3 22 22 H 1.07998 * 120.01283 * 0.03461 * 3 2 1 23 23 H 1.08002 * 119.95132 * 179.80781 * 4 3 2 24 24 H 1.08002 * 119.94394 * 0.03126 * 7 2 1 25 25 H 1.09000 * 109.81260 * 119.54868 * 8 6 5 26 26 H 1.08998 * 109.81519 * 240.45467 * 8 6 5 27 27 H 0.97001 * 119.99333 * 179.97438 * 13 12 10 28 28 H 1.09002 * 109.80797 * 240.45438 * 18 9 8 29 29 H 1.08999 * 109.81012 * 119.54608 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1987 1.1971 0.0000 4 6 3.5801 1.1956 -0.0049 5 6 4.2733 -0.0028 0.0002 6 6 3.5825 -1.1982 0.0047 7 6 2.1981 -1.1962 0.0047 8 6 4.5740 -2.3342 0.0090 9 7 5.9196 -1.7515 0.0073 10 6 7.1052 -2.4365 0.0096 11 1 7.1049 -3.5166 0.0125 12 6 8.3077 -1.7429 0.0070 13 7 8.3081 -0.4268 0.0019 14 14 9.9251 -2.6776 0.0108 15 1 9.6532 -4.1375 0.0158 16 1 10.7040 -2.3237 -1.2029 17 1 10.7038 -2.3144 1.2221 18 6 5.7525 -0.2946 0.0016 19 1 -0.3635 0.0040 1.0276 20 1 -0.3633 0.8880 -0.5173 21 1 -0.3634 -0.8919 -0.5105 22 1 1.6593 2.1327 0.0006 23 1 4.1203 2.1309 -0.0080 24 1 1.6575 -2.1311 0.0078 25 1 4.4360 -2.9417 0.9034 26 1 4.4360 -2.9484 -0.8807 27 1 9.1484 0.0578 0.0005 28 1 6.2133 0.1265 -0.8921 29 1 6.2124 0.1335 0.8922 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060198373.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:23 Heat of formation + Delta-G solvation = 30.378204 kcal Electronic energy + Delta-G solvation = -12535.737771 eV Core-core repulsion = 10423.413968 eV Total energy + Delta-G solvation = -2112.323803 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 203.101 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.98785 -37.69757 -34.45417 -32.94798 -31.58131 -29.38066 -27.74147 -26.10951 -23.55937 -22.07979 -21.22766 -18.99678 -17.19305 -16.28577 -16.10988 -16.09945 -15.71576 -14.95581 -14.48190 -14.32952 -13.49359 -13.48898 -13.13528 -13.07709 -12.89883 -12.84548 -12.48325 -12.05090 -11.95404 -11.79860 -11.55868 -10.91574 -9.68738 -9.41217 -8.83178 -7.94755 -5.32538 0.45699 0.49699 1.44606 1.47092 1.57856 2.43719 2.83066 3.27387 3.53240 3.62027 3.97529 4.10851 4.21028 4.50543 4.64612 4.72465 4.81440 4.86015 4.94417 4.97397 5.22203 5.26503 5.27704 5.40472 5.49487 5.54288 5.70040 5.88669 6.08431 6.17588 6.98429 7.63342 8.32444 9.18848 Molecular weight = 203.10amu Principal moments of inertia in cm(-1) A = 0.082100 B = 0.008009 C = 0.007346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 340.966444 B = 3495.404607 C = 3810.570850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.094 4.094 3 C -0.118 4.118 4 C -0.112 4.112 5 C -0.135 4.135 6 C -0.118 4.118 7 C -0.106 4.106 8 C 0.171 3.829 9 N -0.625 5.625 10 C -0.248 4.248 11 H 0.092 0.908 12 C -0.066 4.066 13 N -0.954 5.954 14 Si 0.991 3.009 15 H -0.262 1.262 16 H -0.289 1.289 17 H -0.289 1.289 18 C 0.225 3.775 19 H 0.081 0.919 20 H 0.081 0.919 21 H 0.075 0.925 22 H 0.156 0.844 23 H 0.126 0.874 24 H 0.142 0.858 25 H 0.041 0.959 26 H 0.042 0.958 27 H 0.251 0.749 28 H 0.021 0.979 29 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.350 1.315 0.013 14.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.094 4.094 3 C -0.135 4.135 4 C -0.130 4.130 5 C -0.136 4.136 6 C -0.118 4.118 7 C -0.124 4.124 8 C 0.047 3.953 9 N -0.352 5.352 10 C -0.375 4.375 11 H 0.110 0.890 12 C -0.259 4.259 13 N -0.602 5.602 14 Si 0.818 3.182 15 H -0.186 1.186 16 H -0.216 1.216 17 H -0.216 1.216 18 C 0.100 3.900 19 H 0.099 0.901 20 H 0.100 0.900 21 H 0.094 0.906 22 H 0.174 0.826 23 H 0.144 0.856 24 H 0.160 0.840 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.039 0.961 29 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -14.130 1.316 0.011 14.191 hybrid contribution 1.546 -0.234 0.007 1.564 sum -12.583 1.083 0.018 12.630 Atomic orbital electron populations 1.20782 0.87943 1.03938 1.03302 1.20209 0.97944 0.92007 0.99206 1.21243 0.92501 0.99143 1.00631 1.20723 0.95049 0.96182 1.01044 1.21138 0.96502 0.95249 1.00698 1.20670 0.94821 0.95188 1.01118 1.20622 0.90766 0.99496 1.01535 1.19808 0.83279 0.93428 0.98821 1.44293 1.01258 1.02077 1.87531 1.19492 0.82663 0.91216 1.44160 0.89042 1.25824 1.01504 0.96764 1.01777 1.70192 1.25760 1.06652 1.57613 0.84830 0.78322 0.78160 0.76876 1.18568 1.21571 1.21558 1.19217 0.87937 0.84862 0.98002 0.90074 0.89993 0.90601 0.82609 0.85560 0.84021 0.94081 0.94079 0.94011 0.96133 0.96132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.71 10.01 71.23 0.71 -1.00 15 2 C -0.09 -2.46 5.88 -19.88 -0.12 -2.58 15 3 C -0.12 -3.25 9.70 22.25 0.22 -3.04 15 4 C -0.11 -3.98 10.05 22.30 0.22 -3.76 15 5 C -0.14 -6.00 6.22 -19.83 -0.12 -6.13 15 6 C -0.12 -4.81 6.22 -19.83 -0.12 -4.93 15 7 C -0.11 -3.32 9.70 22.30 0.22 -3.10 15 8 C 0.17 7.90 7.25 85.63 0.62 8.52 15 9 N -0.63 -35.28 3.41 -709.69 -2.42 -37.70 15 10 C -0.25 -14.56 10.32 84.04 0.87 -13.69 15 11 H 0.09 5.05 7.83 -2.91 -0.02 5.03 15 12 C -0.07 -3.86 5.49 84.86 0.47 -3.39 15 13 N -0.95 -59.40 10.44 21.65 0.23 -59.17 15 14 Si 0.99 46.57 29.55 68.60 2.03 48.60 15 15 H -0.26 -11.44 7.11 99.48 0.71 -10.73 15 16 H -0.29 -13.46 7.11 99.48 0.71 -12.75 15 17 H -0.29 -13.45 7.11 99.48 0.71 -12.75 15 18 C 0.22 12.41 5.39 85.63 0.46 12.87 15 19 H 0.08 1.17 8.14 -2.39 -0.02 1.15 15 20 H 0.08 1.09 8.09 -2.38 -0.02 1.07 15 21 H 0.08 1.11 8.09 -2.39 -0.02 1.09 15 22 H 0.16 3.09 8.06 -2.91 -0.02 3.07 15 23 H 0.13 4.14 8.06 -2.91 -0.02 4.12 15 24 H 0.14 3.58 8.06 -2.91 -0.02 3.56 15 25 H 0.04 1.83 8.14 -2.39 -0.02 1.81 15 26 H 0.04 1.83 8.14 -2.39 -0.02 1.81 15 27 H 0.25 14.96 8.31 -92.71 -0.77 14.19 15 28 H 0.02 1.26 7.49 -2.39 -0.02 1.24 15 29 H 0.02 1.26 7.49 -2.39 -0.02 1.24 15 Total: -1.00 -69.75 246.85 4.38 -65.36 By element: Atomic # 1 Polarization: 2.02 SS G_CDS: 1.12 Total: 3.14 kcal Atomic # 6 Polarization: -23.65 SS G_CDS: 3.42 Total: -20.23 kcal Atomic # 7 Polarization: -94.68 SS G_CDS: -2.19 Total: -96.87 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.60 kcal Total: -69.75 4.38 -65.36 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060198373.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.742 kcal (2) G-P(sol) polarization free energy of solvation -69.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds