Wall clock time and date at job start Sun Mar 29 2020 21:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32562 * 1 3 3 C 1.50703 * 120.00209 * 2 1 4 4 C 1.47816 * 120.00382 * 179.97438 * 2 1 3 5 5 C 1.39549 * 120.14405 * 245.03046 * 4 2 1 6 6 C 1.37955 * 119.85556 * 179.97438 * 5 4 2 7 7 C 1.38366 * 120.14311 * 359.74554 * 6 5 4 8 8 C 1.38321 * 120.28309 * 0.51076 * 7 6 5 9 9 C 1.50700 * 119.92758 * 179.76955 * 8 7 6 10 10 C 1.50706 * 109.47062 * 269.71631 * 9 8 7 11 11 H 1.07998 * 119.99503 * 0.02562 * 10 9 8 12 12 C 1.37871 * 120.00434 * 179.97438 * 10 9 8 13 13 N 1.31516 * 119.99826 * 359.72891 * 12 10 9 14 14 Si 1.86800 * 120.00406 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47364 * 179.72558 * 14 12 10 16 16 H 1.48508 * 109.46883 * 299.72681 * 14 12 10 17 17 H 1.48497 * 109.46870 * 59.72491 * 14 12 10 18 18 C 1.37997 * 120.14205 * 359.48518 * 8 7 6 19 19 H 1.08005 * 119.99660 * 0.02562 * 1 2 3 20 20 H 1.08001 * 120.00198 * 179.97438 * 1 2 3 21 21 H 1.09003 * 109.47102 * 269.99877 * 3 2 1 22 22 H 1.08999 * 109.47168 * 29.99762 * 3 2 1 23 23 H 1.09004 * 109.47358 * 149.99894 * 3 2 1 24 24 H 1.07999 * 120.07084 * 359.95106 * 5 4 2 25 25 H 1.07994 * 119.92645 * 180.02562 * 6 5 4 26 26 H 1.07998 * 119.85851 * 180.25183 * 7 6 5 27 27 H 1.09004 * 109.47406 * 149.72337 * 9 8 7 28 28 H 1.08993 * 109.47274 * 29.71964 * 9 8 7 29 29 H 0.97000 * 120.00236 * 0.27947 * 13 12 10 30 30 H 1.08007 * 120.07360 * 180.23635 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3256 0.0000 0.0000 3 6 2.0792 1.3051 0.0000 4 6 2.0648 -1.2801 0.0006 5 6 2.8564 -1.6317 1.0947 6 6 3.5433 -2.8281 1.0892 7 6 3.4444 -3.6810 0.0042 8 6 2.6657 -3.3359 -1.0857 9 6 2.5679 -4.2686 -2.2653 10 6 3.6506 -3.9363 -3.2596 11 1 4.3407 -3.1306 -3.0572 12 6 3.7608 -4.6614 -4.4270 13 7 2.9243 -5.6466 -4.6706 14 14 5.1032 -4.2499 -5.6590 15 1 5.0114 -5.1736 -6.8182 16 1 4.9341 -2.8505 -6.1265 17 1 6.4315 -4.3985 -5.0118 18 6 1.9735 -2.1421 -1.0925 19 1 -0.5400 0.9354 -0.0004 20 1 -0.5400 -0.9353 -0.0004 21 1 2.2609 1.6197 -1.0277 22 1 1.4901 2.0648 0.5138 23 1 3.0316 1.1748 0.5139 24 1 2.9314 -0.9685 1.9438 25 1 4.1559 -3.1016 1.9355 26 1 3.9809 -4.6183 0.0064 27 1 1.5926 -4.1547 -2.7387 28 1 2.6892 -5.2973 -1.9262 29 1 2.2273 -5.8605 -4.0307 30 1 1.3627 -1.8755 -1.9425 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260214899.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:14 Heat of formation + Delta-G solvation = -0.597319 kcal Electronic energy + Delta-G solvation = -12085.625037 eV Core-core repulsion = 10037.383946 eV Total energy + Delta-G solvation = -2048.241091 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 202.105 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.33405 -36.63246 -35.45984 -32.84473 -30.97104 -28.60920 -27.98135 -25.26633 -23.90597 -22.35830 -19.66093 -18.83799 -17.35511 -16.24392 -16.18827 -15.68011 -15.48280 -14.81872 -14.67417 -14.10788 -13.97699 -13.42449 -13.15768 -13.01701 -12.96535 -12.51689 -12.48559 -11.97591 -11.77273 -11.58761 -11.05080 -10.62228 -10.20882 -9.64226 -9.35328 -8.71861 -6.46611 0.31951 0.54748 1.29385 1.49395 1.57798 1.78093 2.51861 2.89198 3.08867 3.73105 4.05539 4.08351 4.22376 4.26339 4.54990 4.64690 4.66588 4.76504 4.84710 4.95313 4.97527 5.10790 5.17602 5.23825 5.46260 5.55209 5.68549 5.84763 5.88622 5.93592 6.09381 6.14627 6.49200 7.33937 8.64740 Molecular weight = 202.11amu Principal moments of inertia in cm(-1) A = 0.037379 B = 0.008162 C = 0.007681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.895728 B = 3429.546442 C = 3644.478727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.101 4.101 3 C -0.110 4.110 4 C -0.057 4.057 5 C -0.127 4.127 6 C -0.110 4.110 7 C -0.142 4.142 8 C -0.062 4.062 9 C 0.041 3.959 10 C -0.606 4.606 11 H 0.045 0.955 12 C -0.035 4.035 13 N -0.933 5.933 14 Si 1.118 2.882 15 H -0.279 1.279 16 H -0.269 1.269 17 H -0.268 1.268 18 C -0.130 4.130 19 H 0.129 0.871 20 H 0.086 0.914 21 H 0.066 0.934 22 H 0.089 0.911 23 H 0.066 0.934 24 H 0.151 0.849 25 H 0.153 0.847 26 H 0.112 0.888 27 H -0.004 1.004 28 H 0.000 1.000 29 H 0.255 0.745 30 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.740 11.813 11.163 16.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.101 4.101 3 C -0.167 4.167 4 C -0.057 4.057 5 C -0.144 4.144 6 C -0.127 4.127 7 C -0.160 4.160 8 C -0.062 4.062 9 C 0.004 3.996 10 C -0.643 4.643 11 H 0.063 0.937 12 C -0.232 4.232 13 N -0.570 5.570 14 Si 0.938 3.062 15 H -0.204 1.204 16 H -0.195 1.195 17 H -0.193 1.193 18 C -0.148 4.148 19 H 0.148 0.852 20 H 0.105 0.895 21 H 0.085 0.915 22 H 0.107 0.893 23 H 0.085 0.915 24 H 0.168 0.832 25 H 0.170 0.830 26 H 0.130 0.870 27 H 0.014 0.986 28 H 0.018 0.982 29 H 0.065 0.935 30 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -0.116 11.379 9.722 14.967 hybrid contribution -0.958 -0.246 1.131 1.503 sum -1.074 11.132 10.853 15.584 Atomic orbital electron populations 1.24258 0.94393 1.02649 1.00420 1.20706 0.94995 0.93207 1.01171 1.20852 1.00342 0.92871 1.02586 1.19219 0.98035 0.94397 0.94066 1.21386 0.97300 0.97429 0.98334 1.21332 0.99360 0.94007 0.98035 1.21191 0.99811 1.00839 0.94151 1.20143 0.95474 0.95585 0.95019 1.18272 0.95959 0.93257 0.92102 1.22216 1.16315 1.19814 1.05984 0.93698 1.27500 1.02302 0.92890 1.00541 1.70917 1.17932 1.29567 1.38630 0.82935 0.72886 0.76605 0.73733 1.20370 1.19451 1.19304 1.21089 1.01154 0.94295 0.98240 0.85249 0.89524 0.91522 0.89273 0.91470 0.83153 0.82961 0.86976 0.98592 0.98159 0.93523 0.88075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.38 13.95 66.67 0.93 -3.45 16 2 C -0.10 -2.73 5.44 -18.48 -0.10 -2.83 16 3 C -0.11 -2.30 10.02 71.24 0.71 -1.58 16 4 C -0.06 -1.94 5.31 -20.12 -0.11 -2.05 16 5 C -0.13 -3.78 9.69 22.52 0.22 -3.56 16 6 C -0.11 -3.47 10.03 22.23 0.22 -3.25 16 7 C -0.14 -5.75 9.69 22.32 0.22 -5.53 16 8 C -0.06 -2.92 5.06 -19.90 -0.10 -3.02 16 9 C 0.04 2.28 4.41 29.10 0.13 2.41 16 10 C -0.61 -36.23 9.09 25.60 0.23 -36.00 16 11 H 0.04 2.67 7.74 -2.91 -0.02 2.65 16 12 C -0.03 -2.08 5.46 84.65 0.46 -1.62 16 13 N -0.93 -59.12 13.65 21.45 0.29 -58.82 16 14 Si 1.12 51.42 29.90 68.60 2.05 53.47 16 15 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 16 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 17 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 18 C -0.13 -5.49 9.36 22.52 0.21 -5.28 16 19 H 0.13 2.34 8.05 -2.91 -0.02 2.32 16 20 H 0.09 2.29 8.05 -2.91 -0.02 2.26 16 21 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 22 H 0.09 1.38 8.07 -2.39 -0.02 1.36 16 23 H 0.07 1.35 8.03 -2.38 -0.02 1.33 16 24 H 0.15 3.36 8.06 -2.91 -0.02 3.34 16 25 H 0.15 3.62 8.06 -2.91 -0.02 3.59 16 26 H 0.11 4.50 8.06 -2.91 -0.02 4.48 16 27 H 0.00 -0.24 7.96 -2.39 -0.02 -0.26 16 28 H 0.00 0.01 7.94 -2.39 -0.02 -0.01 16 29 H 0.26 16.39 7.22 -92.71 -0.67 15.72 16 30 H 0.10 4.44 8.06 -2.91 -0.02 4.41 16 Total: -1.00 -68.52 265.84 6.56 -61.95 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: 1.19 Total: 9.16 kcal Atomic # 6 Polarization: -68.78 SS G_CDS: 3.03 Total: -65.75 kcal Atomic # 7 Polarization: -59.12 SS G_CDS: 0.29 Total: -58.82 kcal Atomic # 14 Polarization: 51.42 SS G_CDS: 2.05 Total: 53.47 kcal Total: -68.52 6.56 -61.95 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260214899.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.356 kcal (2) G-P(sol) polarization free energy of solvation -68.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds