Wall clock time and date at job start Sun Mar 29 2020 21:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31441 * 1 3 3 Si 1.86801 * 120.00076 * 2 1 4 4 H 1.48493 * 109.47079 * 239.99791 * 3 2 1 5 5 H 1.48500 * 109.46664 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47336 * 119.99494 * 3 2 1 7 7 C 1.38755 * 120.00098 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00068 * 180.02562 * 7 2 1 9 9 O 1.34922 * 120.00272 * 0.02562 * 7 2 1 10 10 C 1.34310 * 117.00349 * 179.97438 * 9 7 2 11 11 O 1.21213 * 119.99644 * 0.02562 * 10 9 7 12 12 C 1.50693 * 119.99805 * 180.27868 * 10 9 7 13 13 H 1.09001 * 109.61168 * 58.61313 * 12 10 9 14 14 C 1.53863 * 109.60928 * 178.77336 * 12 10 9 15 15 C 1.55131 * 106.90286 * 167.17570 * 14 12 10 16 16 S 1.83468 * 102.20312 * 317.88054 * 15 14 12 17 17 C 1.54277 * 109.61028 * 298.26918 * 12 10 9 18 18 H 0.96993 * 120.00374 * 0.02562 * 1 2 3 19 19 H 1.09006 * 109.96997 * 286.53556 * 14 12 10 20 20 H 1.08996 * 109.97429 * 47.80766 * 14 12 10 21 21 H 1.08999 * 110.85481 * 199.70709 * 15 14 12 22 22 H 1.09001 * 111.03502 * 76.13881 * 15 14 12 23 23 H 1.08994 * 110.39967 * 330.92188 * 17 12 10 24 24 H 1.08996 * 110.39727 * 93.33656 * 17 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6177 0.0000 4 1 3.1022 1.6964 -1.2124 5 1 1.2834 2.7464 -0.0006 6 1 3.1021 1.6965 1.2125 7 6 2.0082 -1.2016 0.0005 8 1 3.0882 -1.2016 0.0010 9 8 1.3337 -2.3701 0.0005 10 6 2.0652 -3.4966 0.0005 11 8 3.2756 -3.4330 0.0010 12 6 1.3810 -4.8392 -0.0058 13 1 0.7420 -4.9201 -0.8852 14 6 2.4378 -5.9571 -0.0355 15 6 1.7009 -7.2832 0.2887 16 16 0.5814 -6.7812 1.6528 17 6 0.5274 -4.9915 1.2703 18 1 -0.4850 0.8400 -0.0004 19 1 2.8907 -6.0151 -1.0253 20 1 3.2049 -5.7644 0.7145 21 1 2.4037 -8.0457 0.6242 22 1 1.1311 -7.6345 -0.5716 23 1 0.9602 -4.4150 2.0878 24 1 -0.4980 -4.6740 1.0815 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306657765.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:16 Heat of formation + Delta-G solvation = -91.137984 kcal Electronic energy + Delta-G solvation = -11076.290575 eV Core-core repulsion = 8887.901109 eV Total energy + Delta-G solvation = -2188.389467 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 202.045 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.28409 -36.10697 -34.61112 -32.20732 -29.69352 -25.80763 -24.74589 -22.05813 -19.42233 -17.79942 -16.83793 -16.40309 -15.52065 -14.73034 -14.42694 -14.04551 -13.51933 -12.92312 -12.43463 -12.06581 -11.80434 -11.51644 -11.44444 -11.18337 -10.74717 -10.49398 -10.46374 -9.98989 -9.84287 -9.02560 -8.62997 -7.56796 -6.46538 -4.14913 1.95127 2.46253 3.08715 3.15786 3.19801 3.43206 3.85473 4.37243 4.79087 4.95931 5.08084 5.14172 5.26796 5.33894 5.61260 5.81013 5.90998 6.15131 6.30684 6.69033 7.33528 7.88679 8.62071 9.01895 9.76968 10.70976 Molecular weight = 202.05amu Principal moments of inertia in cm(-1) A = 0.073061 B = 0.008444 C = 0.007855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 383.148924 B = 3315.217097 C = 3563.791134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.044 3.956 3 Si 0.944 3.056 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.269 1.269 7 C -0.385 4.385 8 H 0.096 0.904 9 O -0.209 6.209 10 C 0.404 3.596 11 O -0.552 6.552 12 C -0.080 4.080 13 H 0.105 0.895 14 C -0.109 4.109 15 C -0.068 4.068 16 S -0.308 6.308 17 C -0.050 4.050 18 H 0.271 0.729 19 H 0.088 0.912 20 H 0.090 0.910 21 H 0.103 0.897 22 H 0.091 0.909 23 H 0.098 0.902 24 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.756 -9.044 -0.059 9.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.161 4.161 3 Si 0.769 3.231 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.194 1.194 7 C -0.461 4.461 8 H 0.113 0.887 9 O -0.116 6.116 10 C 0.249 3.751 11 O -0.449 6.449 12 C -0.101 4.101 13 H 0.123 0.877 14 C -0.148 4.148 15 C -0.216 4.216 16 S -0.082 6.082 17 C -0.198 4.198 18 H 0.081 0.919 19 H 0.107 0.893 20 H 0.109 0.891 21 H 0.121 0.879 22 H 0.109 0.891 23 H 0.117 0.883 24 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 0.328 -9.495 0.814 9.535 hybrid contribution 0.868 1.485 -0.912 1.947 sum 1.196 -8.010 -0.099 8.099 Atomic orbital electron populations 1.69975 1.06010 1.27939 1.46032 1.25345 0.95823 0.98895 0.96022 0.85732 0.78654 0.79346 0.79392 1.19451 1.20307 1.19424 1.21198 0.92392 0.79793 1.52762 0.88676 1.83872 1.39290 1.13301 1.75101 1.22702 0.86504 0.86731 0.79197 1.90562 1.15503 1.87875 1.50986 1.21606 0.97062 0.91938 0.99451 0.87654 1.22396 0.97839 0.89880 1.04637 1.24247 0.99051 1.00275 0.98072 1.87405 1.65927 1.10550 1.44308 1.23954 1.04044 0.92283 0.99542 0.91917 0.89306 0.89118 0.87906 0.89078 0.88333 0.87431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.96 13.67 55.48 0.76 -24.20 14 2 C 0.04 1.22 5.49 -17.53 -0.10 1.12 14 3 Si 0.94 21.09 29.55 -169.99 -5.02 16.07 14 4 H -0.27 -5.88 7.11 56.52 0.40 -5.48 14 5 H -0.28 -5.95 7.11 56.52 0.40 -5.55 14 6 H -0.27 -5.89 7.11 56.52 0.40 -5.49 14 7 C -0.39 -11.27 9.65 30.92 0.30 -10.97 14 8 H 0.10 2.80 6.86 -52.48 -0.36 2.44 14 9 O -0.21 -5.86 9.71 -20.71 -0.20 -6.06 14 10 C 0.40 9.71 7.05 36.00 0.25 9.97 14 11 O -0.55 -14.48 15.03 -19.05 -0.29 -14.77 14 12 C -0.08 -1.43 3.04 -90.66 -0.28 -1.70 14 13 H 0.11 1.72 8.14 -51.93 -0.42 1.30 14 14 C -0.11 -1.64 5.26 -25.15 -0.13 -1.77 14 15 C -0.07 -0.84 7.38 38.28 0.28 -0.56 14 16 S -0.31 -4.64 23.26 -107.50 -2.50 -7.14 14 17 C -0.05 -0.85 6.78 37.83 0.26 -0.60 14 18 H 0.27 7.20 8.31 -40.82 -0.34 6.86 14 19 H 0.09 1.24 8.14 -51.93 -0.42 0.82 14 20 H 0.09 1.50 7.70 -51.93 -0.40 1.10 14 21 H 0.10 1.08 8.14 -51.93 -0.42 0.65 14 22 H 0.09 0.97 8.14 -51.93 -0.42 0.55 14 23 H 0.10 1.80 7.88 -51.93 -0.41 1.39 14 24 H 0.11 1.76 8.14 -51.93 -0.42 1.34 14 LS Contribution 228.64 15.07 3.45 3.45 Total: -1.00 -31.61 228.64 -5.64 -37.24 By element: Atomic # 1 Polarization: 2.34 SS G_CDS: -2.42 Total: -0.07 kcal Atomic # 6 Polarization: -5.10 SS G_CDS: 0.59 Total: -4.51 kcal Atomic # 7 Polarization: -24.96 SS G_CDS: 0.76 Total: -24.20 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: -0.49 Total: -20.83 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: -4.64 SS G_CDS: -2.50 Total: -7.14 kcal Total LS contribution 3.45 Total: 3.45 kcal Total: -31.61 -5.64 -37.24 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306657765.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.893 kcal (2) G-P(sol) polarization free energy of solvation -31.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds