Wall clock time and date at job start Sun Mar 29 2020 21:41:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36934 * 120.00061 * 2 1 4 4 H 1.07999 * 120.00049 * 322.09177 * 3 2 1 5 5 C 1.38808 * 120.00202 * 142.09360 * 3 2 1 6 6 N 1.31617 * 120.00546 * 157.10993 * 5 3 2 7 7 Si 1.86804 * 120.00115 * 337.10764 * 5 3 2 8 8 H 1.48498 * 109.47316 * 95.72935 * 7 5 3 9 9 H 1.48497 * 109.47203 * 215.73336 * 7 5 3 10 10 H 1.48503 * 109.46587 * 335.73208 * 7 5 3 11 11 C 1.46505 * 119.99884 * 179.97438 * 2 1 3 12 12 C 1.52997 * 109.46839 * 90.00523 * 11 2 1 13 13 H 1.08996 * 109.52998 * 59.86853 * 12 11 2 14 14 C 1.53147 * 109.52306 * 179.97438 * 12 11 2 15 15 O 1.43077 * 109.15114 * 175.27854 * 14 12 11 16 16 C 1.43079 * 113.58985 * 302.04666 * 15 14 12 17 17 C 1.53138 * 109.15339 * 57.95441 * 16 15 14 18 18 O 1.43083 * 109.20411 * 304.65436 * 17 16 15 19 19 H 1.08994 * 109.46876 * 269.56329 * 1 2 3 20 20 H 1.08997 * 109.46533 * 29.56124 * 1 2 3 21 21 H 1.09006 * 109.46778 * 149.56021 * 1 2 3 22 22 H 0.96999 * 120.00526 * 179.97438 * 6 5 3 23 23 H 1.09001 * 109.47085 * 330.00476 * 11 2 1 24 24 H 1.08998 * 109.46808 * 209.99986 * 11 2 1 25 25 H 1.09002 * 109.52481 * 55.37708 * 14 12 11 26 26 H 1.08997 * 109.52608 * 295.18089 * 14 12 11 27 27 H 1.08999 * 109.52485 * 298.04849 * 16 15 14 28 28 H 1.09001 * 109.57661 * 177.88813 * 16 15 14 29 29 H 1.09002 * 109.52474 * 64.58533 * 17 16 15 30 30 H 1.08994 * 109.53062 * 184.71797 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 1.7807 2.0225 -0.5746 5 6 3.3182 1.3127 0.7385 6 7 4.2040 2.2313 0.4164 7 14 3.6335 0.1797 2.1899 8 1 4.4726 -0.9644 1.7516 9 1 4.3392 0.9300 3.2595 10 1 2.3391 -0.3273 2.7123 11 6 2.1976 -1.2688 0.0006 12 6 2.4526 -1.7110 -1.4417 13 1 3.0397 -0.9511 -1.9574 14 6 3.2189 -3.0370 -1.4426 15 8 3.3567 -3.4985 -2.7898 16 6 2.1077 -3.6778 -3.4643 17 6 1.3414 -2.3519 -3.4635 18 8 1.2023 -1.8895 -2.1166 19 1 -0.3633 -0.0078 1.0276 20 1 -0.3632 0.8939 -0.5070 21 1 -0.3633 -0.8861 -0.5207 22 1 5.0204 2.3202 0.9327 23 1 1.6084 -2.0282 0.5147 24 1 3.1500 -1.1382 0.5143 25 1 2.6695 -3.7756 -0.8589 26 1 4.2063 -2.8874 -1.0060 27 1 1.5209 -4.4379 -2.9485 28 1 2.2893 -3.9929 -4.4918 29 1 1.8908 -1.6133 -4.0472 30 1 0.3544 -2.5012 -3.9011 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595743952.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:45 Heat of formation + Delta-G solvation = -61.993711 kcal Electronic energy + Delta-G solvation = -13847.002011 eV Core-core repulsion = 11450.675221 eV Total energy + Delta-G solvation = -2396.326791 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 201.115 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.50321 -36.16577 -35.14793 -31.92986 -31.13676 -28.34990 -26.18952 -25.46375 -23.11432 -21.05529 -20.55591 -16.99378 -16.47196 -16.01237 -15.70083 -15.14067 -14.83455 -14.45905 -13.69623 -13.22217 -12.83514 -12.69252 -12.07248 -12.00723 -11.56671 -11.30870 -11.02260 -10.66814 -10.47058 -10.34710 -10.01308 -9.89292 -9.58752 -8.73247 -8.51588 -6.77052 -6.00153 -3.39611 3.25910 3.44625 3.51100 3.95903 4.15435 4.50557 4.82281 5.08319 5.21004 5.32062 5.36495 5.49261 5.62700 5.70475 5.76304 5.92412 6.02609 6.16401 6.41885 6.54233 6.62129 6.80125 6.87023 7.20362 7.59431 8.06359 8.40300 8.99987 9.71395 10.15439 11.15947 Molecular weight = 201.12amu Principal moments of inertia in cm(-1) A = 0.041189 B = 0.012299 C = 0.011141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.631647 B = 2276.063630 C = 2512.586810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.129 3.871 2 N -0.604 5.604 3 C -0.267 4.267 4 H 0.078 0.922 5 C 0.033 3.967 6 N -0.899 5.899 7 Si 0.872 3.128 8 H -0.285 1.285 9 H -0.298 1.298 10 H -0.268 1.268 11 C 0.150 3.850 12 C 0.038 3.962 13 H 0.075 0.925 14 C 0.028 3.972 15 O -0.384 6.384 16 C 0.025 3.975 17 C 0.023 3.977 18 O -0.363 6.363 19 H 0.003 0.997 20 H 0.039 0.961 21 H 0.039 0.961 22 H 0.263 0.737 23 H 0.046 0.954 24 H 0.068 0.932 25 H 0.055 0.945 26 H 0.101 0.899 27 H 0.054 0.946 28 H 0.096 0.904 29 H 0.056 0.944 30 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.179 -11.239 -4.682 12.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.016 4.016 2 N -0.327 5.327 3 C -0.396 4.396 4 H 0.096 0.904 5 C -0.168 4.168 6 N -0.540 5.540 7 Si 0.702 3.298 8 H -0.213 1.213 9 H -0.226 1.226 10 H -0.193 1.193 11 C 0.023 3.977 12 C -0.022 4.022 13 H 0.093 0.907 14 C -0.049 4.049 15 O -0.303 6.303 16 C -0.052 4.052 17 C -0.054 4.054 18 O -0.282 6.282 19 H 0.021 0.979 20 H 0.058 0.942 21 H 0.058 0.942 22 H 0.073 0.927 23 H 0.065 0.935 24 H 0.086 0.914 25 H 0.073 0.927 26 H 0.120 0.880 27 H 0.073 0.927 28 H 0.115 0.885 29 H 0.074 0.926 30 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -4.063 -11.113 -4.623 12.703 hybrid contribution 0.366 -0.571 0.737 1.001 sum -3.698 -11.683 -3.886 12.856 Atomic orbital electron populations 1.21061 0.83995 0.99426 0.97078 1.43895 1.01123 1.01413 1.86232 1.18842 1.06029 0.90781 1.23967 0.90412 1.25497 0.96865 0.96579 0.97811 1.69881 1.08485 1.36196 1.39476 0.86987 0.78024 0.80080 0.84713 1.21329 1.22625 1.19281 1.21186 0.97125 0.88624 0.90797 1.23735 0.85407 0.94980 0.98123 0.90712 1.23350 1.02227 0.96114 0.83237 1.88042 1.28613 1.87184 1.26438 1.23197 0.86532 0.97376 0.98069 1.23112 1.01012 0.95084 0.86241 1.88162 1.29337 1.86721 1.23982 0.97869 0.94221 0.94208 0.92688 0.93516 0.91402 0.92680 0.88048 0.92727 0.88547 0.92590 0.88699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 2.78 10.45 59.85 0.63 3.41 16 2 N -0.60 -15.01 2.40 -181.12 -0.43 -15.44 16 3 C -0.27 -7.65 9.90 -15.06 -0.15 -7.80 16 4 H 0.08 2.41 8.06 -52.49 -0.42 1.98 16 5 C 0.03 0.95 5.29 -17.43 -0.09 0.86 16 6 N -0.90 -27.51 13.97 55.49 0.78 -26.74 16 7 Si 0.87 22.02 25.09 -169.99 -4.26 17.76 16 8 H -0.29 -6.82 6.68 56.52 0.38 -6.45 16 9 H -0.30 -7.62 7.11 56.52 0.40 -7.22 16 10 H -0.27 -6.70 7.11 56.52 0.40 -6.29 16 11 C 0.15 3.32 4.24 -4.04 -0.02 3.30 16 12 C 0.04 0.76 3.11 -26.66 -0.08 0.68 16 13 H 0.07 1.71 8.14 -51.93 -0.42 1.29 16 14 C 0.03 0.48 6.34 37.23 0.24 0.71 16 15 O -0.38 -6.42 10.85 -48.72 -0.53 -6.94 16 16 C 0.03 0.34 7.05 37.23 0.26 0.60 16 17 C 0.02 0.34 7.05 37.23 0.26 0.60 16 18 O -0.36 -6.90 9.14 -48.72 -0.45 -7.34 16 19 H 0.00 0.07 8.14 -51.93 -0.42 -0.36 16 20 H 0.04 0.84 8.04 -51.93 -0.42 0.42 16 21 H 0.04 0.78 7.06 -51.93 -0.37 0.41 16 22 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 23 H 0.05 0.94 8.07 -51.93 -0.42 0.52 16 24 H 0.07 1.60 3.36 -51.93 -0.17 1.42 16 25 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.10 1.66 8.14 -51.93 -0.42 1.23 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 243.79 15.07 3.67 3.67 Total: -1.00 -31.48 243.79 -4.52 -36.00 By element: Atomic # 1 Polarization: 1.02 SS G_CDS: -4.34 Total: -3.33 kcal Atomic # 6 Polarization: 1.32 SS G_CDS: 1.04 Total: 2.37 kcal Atomic # 7 Polarization: -42.52 SS G_CDS: 0.34 Total: -42.18 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: -0.97 Total: -14.29 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.26 Total: 17.76 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -31.48 -4.52 -36.00 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595743952.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.998 kcal (2) G-P(sol) polarization free energy of solvation -31.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds