Wall clock time and date at job start Sun Mar 29 2020 21:41:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36934 * 120.00061 * 2 1 4 4 H 1.07999 * 120.00049 * 322.09177 * 3 2 1 5 5 C 1.38808 * 120.00202 * 142.09360 * 3 2 1 6 6 N 1.31617 * 120.00546 * 157.10993 * 5 3 2 7 7 Si 1.86804 * 120.00115 * 337.10764 * 5 3 2 8 8 H 1.48498 * 109.47316 * 95.72935 * 7 5 3 9 9 H 1.48497 * 109.47203 * 215.73336 * 7 5 3 10 10 H 1.48503 * 109.46587 * 335.73208 * 7 5 3 11 11 C 1.46505 * 119.99884 * 179.97438 * 2 1 3 12 12 C 1.52997 * 109.46839 * 90.00523 * 11 2 1 13 13 H 1.08996 * 109.52998 * 59.86853 * 12 11 2 14 14 C 1.53147 * 109.52306 * 179.97438 * 12 11 2 15 15 O 1.43077 * 109.15114 * 175.27854 * 14 12 11 16 16 C 1.43079 * 113.58985 * 302.04666 * 15 14 12 17 17 C 1.53138 * 109.15339 * 57.95441 * 16 15 14 18 18 O 1.43083 * 109.20411 * 304.65436 * 17 16 15 19 19 H 1.08994 * 109.46876 * 269.56329 * 1 2 3 20 20 H 1.08997 * 109.46533 * 29.56124 * 1 2 3 21 21 H 1.09006 * 109.46778 * 149.56021 * 1 2 3 22 22 H 0.96999 * 120.00526 * 179.97438 * 6 5 3 23 23 H 1.09001 * 109.47085 * 330.00476 * 11 2 1 24 24 H 1.08998 * 109.46808 * 209.99986 * 11 2 1 25 25 H 1.09002 * 109.52481 * 55.37708 * 14 12 11 26 26 H 1.08997 * 109.52608 * 295.18089 * 14 12 11 27 27 H 1.08999 * 109.52485 * 298.04849 * 16 15 14 28 28 H 1.09001 * 109.57661 * 177.88813 * 16 15 14 29 29 H 1.09002 * 109.52474 * 64.58533 * 17 16 15 30 30 H 1.08994 * 109.53062 * 184.71797 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 1.7807 2.0225 -0.5746 5 6 3.3182 1.3127 0.7385 6 7 4.2040 2.2313 0.4164 7 14 3.6335 0.1797 2.1899 8 1 4.4726 -0.9644 1.7516 9 1 4.3392 0.9300 3.2595 10 1 2.3391 -0.3273 2.7123 11 6 2.1976 -1.2688 0.0006 12 6 2.4526 -1.7110 -1.4417 13 1 3.0397 -0.9511 -1.9574 14 6 3.2189 -3.0370 -1.4426 15 8 3.3567 -3.4985 -2.7898 16 6 2.1077 -3.6778 -3.4643 17 6 1.3414 -2.3519 -3.4635 18 8 1.2023 -1.8895 -2.1166 19 1 -0.3633 -0.0078 1.0276 20 1 -0.3632 0.8939 -0.5070 21 1 -0.3633 -0.8861 -0.5207 22 1 5.0204 2.3202 0.9327 23 1 1.6084 -2.0282 0.5147 24 1 3.1500 -1.1382 0.5143 25 1 2.6695 -3.7756 -0.8589 26 1 4.2063 -2.8874 -1.0060 27 1 1.5209 -4.4379 -2.9485 28 1 2.2893 -3.9929 -4.4918 29 1 1.8908 -1.6133 -4.0472 30 1 0.3544 -2.5012 -3.9011 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595743952.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:45 Heat of formation + Delta-G solvation = -84.916525 kcal Electronic energy + Delta-G solvation = -13847.996019 eV Core-core repulsion = 11450.675221 eV Total energy + Delta-G solvation = -2397.320799 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 201.115 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.84598 -37.84823 -36.66804 -33.90667 -32.77331 -29.70462 -28.03708 -27.11030 -24.55457 -22.86272 -22.03850 -18.96290 -17.88817 -17.49498 -17.12602 -16.80475 -16.21142 -15.99458 -15.42646 -14.93245 -14.67663 -14.26203 -13.95557 -13.35307 -13.25608 -12.78276 -12.64114 -12.38920 -12.23591 -12.01749 -11.69676 -11.55692 -11.26702 -10.68129 -10.07707 -8.77355 -8.22734 -5.61003 1.27352 1.41221 1.53301 2.39724 2.72929 2.80621 3.00385 3.37059 3.79845 4.02951 4.09029 4.17222 4.21329 4.39075 4.50081 4.58587 4.61091 4.77945 4.80976 4.94546 5.00508 5.09146 5.17450 5.90707 6.01396 6.12658 6.20344 6.95269 7.59233 8.03787 8.97525 Molecular weight = 201.12amu Principal moments of inertia in cm(-1) A = 0.041189 B = 0.012299 C = 0.011141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.631647 B = 2276.063630 C = 2512.586810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.131 3.869 2 N -0.618 5.618 3 C -0.267 4.267 4 H 0.034 0.966 5 C -0.021 4.021 6 N -0.947 5.947 7 Si 0.941 3.059 8 H -0.262 1.262 9 H -0.303 1.303 10 H -0.258 1.258 11 C 0.144 3.856 12 C 0.046 3.954 13 H 0.031 0.969 14 C 0.036 3.964 15 O -0.400 6.400 16 C 0.024 3.976 17 C 0.016 3.984 18 O -0.380 6.380 19 H 0.015 0.985 20 H 0.031 0.969 21 H 0.061 0.939 22 H 0.265 0.735 23 H 0.075 0.925 24 H 0.054 0.946 25 H 0.079 0.921 26 H 0.104 0.896 27 H 0.073 0.927 28 H 0.127 0.873 29 H 0.041 0.959 30 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.906 -14.068 -4.328 15.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.013 4.013 2 N -0.342 5.342 3 C -0.396 4.396 4 H 0.052 0.948 5 C -0.218 4.218 6 N -0.591 5.591 7 Si 0.768 3.232 8 H -0.188 1.188 9 H -0.232 1.232 10 H -0.182 1.182 11 C 0.018 3.982 12 C -0.014 4.014 13 H 0.049 0.951 14 C -0.042 4.042 15 O -0.319 6.319 16 C -0.052 4.052 17 C -0.061 4.061 18 O -0.299 6.299 19 H 0.033 0.967 20 H 0.050 0.950 21 H 0.080 0.920 22 H 0.074 0.926 23 H 0.093 0.907 24 H 0.072 0.928 25 H 0.097 0.903 26 H 0.122 0.878 27 H 0.091 0.909 28 H 0.145 0.855 29 H 0.059 0.941 30 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -4.816 -13.980 -4.287 15.396 hybrid contribution 0.493 0.339 0.465 0.758 sum -4.323 -13.641 -3.822 14.811 Atomic orbital electron populations 1.21114 0.82149 1.00108 0.97934 1.44025 1.02426 1.01103 1.86636 1.18673 1.06324 0.91462 1.23189 0.94807 1.26138 0.96576 0.98846 1.00245 1.70012 1.09290 1.38972 1.40818 0.85876 0.78524 0.78586 0.80201 1.18835 1.23154 1.18196 1.21265 0.96619 0.87939 0.92328 1.23357 0.85847 0.95772 0.96446 0.95052 1.23244 1.02159 0.94691 0.84095 1.88027 1.30589 1.86942 1.26329 1.23435 0.85350 0.96686 0.99739 1.23412 1.03088 0.95528 0.84088 1.88095 1.28635 1.87223 1.25964 0.96685 0.95013 0.92044 0.92613 0.90654 0.92787 0.90260 0.87822 0.90890 0.85524 0.94063 0.85480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 5.46 10.45 127.77 1.33 6.79 16 2 N -0.62 -30.38 2.40 -726.93 -1.74 -32.12 16 3 C -0.27 -15.66 9.90 84.03 0.83 -14.83 16 4 H 0.03 2.23 8.06 -2.91 -0.02 2.21 16 5 C -0.02 -1.26 5.29 84.86 0.45 -0.82 16 6 N -0.95 -59.70 13.97 21.65 0.30 -59.40 16 7 Si 0.94 45.31 25.09 68.60 1.72 47.04 16 8 H -0.26 -11.54 6.68 99.48 0.66 -10.88 16 9 H -0.30 -14.75 7.11 99.48 0.71 -14.04 16 10 H -0.26 -11.90 7.11 99.48 0.71 -11.20 16 11 C 0.14 6.13 4.24 86.38 0.37 6.49 16 12 C 0.05 1.81 3.11 30.64 0.10 1.91 16 13 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 14 C 0.04 1.12 6.34 72.03 0.46 1.58 16 15 O -0.40 -12.31 10.85 -136.09 -1.48 -13.78 16 16 C 0.02 0.56 7.05 72.03 0.51 1.07 16 17 C 0.02 0.42 7.05 72.03 0.51 0.93 16 18 O -0.38 -13.70 9.14 -136.09 -1.24 -14.94 16 19 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 20 H 0.03 1.33 8.04 -2.39 -0.02 1.31 16 21 H 0.06 2.27 7.06 -2.38 -0.02 2.25 16 22 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 23 H 0.08 2.76 8.07 -2.39 -0.02 2.74 16 24 H 0.05 2.43 3.36 -2.39 -0.01 2.42 16 25 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 26 H 0.10 3.17 8.14 -2.39 -0.02 3.15 16 27 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.13 2.19 8.14 -2.39 -0.02 2.17 16 29 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.13 2.62 8.14 -2.39 -0.02 2.60 16 Total: -1.00 -68.78 243.79 3.18 -65.61 By element: Atomic # 1 Polarization: 3.41 SS G_CDS: 1.07 Total: 4.47 kcal Atomic # 6 Polarization: -1.42 SS G_CDS: 4.55 Total: 3.13 kcal Atomic # 7 Polarization: -90.08 SS G_CDS: -1.44 Total: -91.52 kcal Atomic # 8 Polarization: -26.00 SS G_CDS: -2.72 Total: -28.72 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 1.72 Total: 47.04 kcal Total: -68.78 3.18 -65.61 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595743952.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.309 kcal (2) G-P(sol) polarization free energy of solvation -68.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds