Wall clock time and date at job start Sun Mar 29 2020 22:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31544 * 1 3 3 Si 1.86806 * 120.00154 * 2 1 4 4 H 1.48499 * 109.47183 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.46939 * 300.00026 * 3 2 1 6 6 H 1.48501 * 109.46778 * 59.99766 * 3 2 1 7 7 C 1.38830 * 119.99950 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99955 * 179.97438 * 7 2 1 9 9 N 1.36989 * 119.99902 * 0.02562 * 7 2 1 10 10 C 1.38443 * 119.99957 * 179.97438 * 9 7 2 11 11 N 1.32529 * 119.21956 * 179.97438 * 10 9 7 12 12 C 1.32230 * 120.74924 * 179.97438 * 11 10 9 13 13 C 1.38660 * 119.19248 * 0.02562 * 12 11 10 14 14 C 1.50701 * 120.72373 * 179.97438 * 13 12 11 15 15 C 1.53001 * 117.51956 * 171.27936 * 14 13 12 16 16 C 1.52999 * 60.00190 * 107.47765 * 15 14 13 17 17 C 1.38660 * 118.55601 * 0.24418 * 13 12 11 18 18 N 1.32241 * 119.19120 * 359.47247 * 17 13 12 19 19 H 0.97000 * 119.99814 * 359.97438 * 1 2 3 20 20 H 0.96996 * 120.00387 * 359.97438 * 9 7 2 21 21 H 1.07997 * 120.40676 * 180.02562 * 12 11 10 22 22 H 1.09002 * 115.55088 * 25.57545 * 14 13 12 23 23 H 1.09001 * 117.49733 * 214.97195 * 15 14 13 24 24 H 1.08995 * 117.49577 * 359.97438 * 15 14 13 25 25 H 1.09004 * 117.50150 * 252.51496 * 16 15 14 26 26 H 1.09004 * 117.49681 * 107.48417 * 16 15 14 27 27 H 1.07998 * 120.40397 * 179.75344 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3154 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.7095 1.3464 -0.0006 5 1 1.8908 2.3964 -1.2125 6 1 1.8907 2.3964 1.2125 7 6 2.0096 -1.2023 0.0005 8 1 3.0896 -1.2023 0.0001 9 7 1.3246 -2.3887 0.0005 10 6 2.0168 -3.5876 0.0005 11 7 1.3386 -4.7262 0.0011 12 6 1.9689 -5.8886 0.0006 13 6 3.3554 -5.9061 0.0000 14 6 4.1089 -7.2112 0.0000 15 6 5.6238 -7.1529 -0.2063 16 6 5.0519 -7.4825 1.1740 17 6 4.0335 -4.6967 0.0052 18 7 3.3420 -3.5695 -0.0001 19 1 -0.4850 0.8401 0.0004 20 1 0.3546 -2.3887 0.0005 21 1 1.4106 -6.8131 0.0006 22 1 3.5756 -8.0620 -0.4241 23 1 6.0871 -7.9652 -0.7662 24 1 6.0756 -6.1704 -0.3425 25 1 5.1275 -6.7167 1.9461 26 1 5.1389 -8.5117 1.5221 27 1 5.1133 -4.6755 0.0090 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155534354.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:30 Heat of formation + Delta-G solvation = 59.425816 kcal Electronic energy + Delta-G solvation = -12437.287257 eV Core-core repulsion = 10195.371231 eV Total energy + Delta-G solvation = -2241.916026 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 205.091 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.54787 -38.30251 -36.81586 -34.19055 -33.79158 -30.79617 -27.01623 -25.44040 -24.16472 -23.02887 -21.52338 -20.00862 -18.95354 -17.77245 -16.78756 -16.39076 -15.74866 -15.45685 -15.27677 -14.95618 -14.10999 -13.56380 -13.27993 -13.17209 -12.47763 -12.43862 -12.18425 -12.07648 -11.55195 -11.53625 -11.44508 -11.07469 -10.52796 -9.63477 -8.92543 -8.54263 -5.84588 0.48712 0.65301 1.40836 1.46003 1.56849 2.21464 2.80550 2.81308 3.17419 3.51930 3.70239 3.93459 4.01397 4.17918 4.29565 4.40968 4.56172 4.87828 4.94401 5.12088 5.15537 5.34979 5.40367 5.49229 5.65266 5.98205 6.53299 6.67690 7.13642 7.35105 7.96986 8.64289 Molecular weight = 205.09amu Principal moments of inertia in cm(-1) A = 0.062692 B = 0.007343 C = 0.006698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 446.518226 B = 3812.207622 C = 4179.392040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.027 4.027 3 Si 1.008 2.992 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.306 4.306 8 H 0.105 0.895 9 N -0.533 5.533 10 C 0.484 3.516 11 N -0.619 5.619 12 C 0.192 3.808 13 C -0.276 4.276 14 C -0.089 4.089 15 C -0.176 4.176 16 C -0.173 4.173 17 C 0.183 3.817 18 N -0.603 5.603 19 H 0.279 0.721 20 H 0.402 0.598 21 H 0.186 0.814 22 H 0.126 0.874 23 H 0.115 0.885 24 H 0.089 0.911 25 H 0.078 0.922 26 H 0.114 0.886 27 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.713 -11.405 0.265 14.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.227 4.227 3 Si 0.831 3.169 4 H -0.185 1.185 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.436 4.436 8 H 0.123 0.877 9 N -0.147 5.147 10 C 0.129 3.871 11 N -0.345 5.345 12 C 0.022 3.978 13 C -0.288 4.288 14 C -0.108 4.108 15 C -0.213 4.213 16 C -0.211 4.211 17 C 0.013 3.987 18 N -0.328 5.328 19 H 0.088 0.912 20 H 0.237 0.763 21 H 0.203 0.797 22 H 0.144 0.856 23 H 0.133 0.867 24 H 0.108 0.892 25 H 0.097 0.903 26 H 0.132 0.868 27 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 8.033 -9.996 0.262 12.827 hybrid contribution -0.052 0.183 0.022 0.191 sum 7.981 -9.813 0.284 12.652 Atomic orbital electron populations 1.69796 1.07416 1.29549 1.49694 1.26334 0.96648 1.03115 0.96593 0.84636 0.78306 0.75894 0.78099 1.18501 1.19855 1.19851 1.20091 0.93504 0.82335 1.47710 0.87678 1.40537 1.07942 1.01345 1.64877 1.19475 0.86201 0.86485 0.94900 1.67830 1.41656 0.98549 1.26463 1.23066 0.91967 0.94822 0.87907 1.20362 0.95225 0.95971 1.17243 1.20544 0.91592 0.94479 1.04175 1.23104 0.94846 1.03501 0.99843 1.23072 1.03594 1.02952 0.91448 1.23097 1.00407 0.86781 0.88447 1.67895 1.07199 1.32581 1.25144 0.91189 0.76297 0.79691 0.85620 0.86681 0.89219 0.90305 0.86805 0.81066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.19 13.05 21.65 0.28 -51.91 15 2 C -0.03 -1.47 5.50 84.88 0.47 -1.00 15 3 Si 1.01 42.68 29.55 68.60 2.03 44.71 15 4 H -0.26 -10.73 7.11 99.48 0.71 -10.02 15 5 H -0.27 -11.17 7.11 99.48 0.71 -10.46 15 6 H -0.27 -11.17 7.11 99.48 0.71 -10.46 15 7 C -0.31 -17.34 9.69 84.03 0.81 -16.52 15 8 H 0.11 5.99 7.05 -2.91 -0.02 5.97 15 9 N -0.53 -29.91 5.43 -194.34 -1.05 -30.96 15 10 C 0.48 25.02 8.38 261.43 2.19 27.21 15 11 N -0.62 -28.61 10.46 -197.89 -2.07 -30.68 15 12 C 0.19 6.91 11.03 84.73 0.93 7.84 15 13 C -0.28 -9.02 5.64 -19.66 -0.11 -9.13 15 14 C -0.09 -2.01 6.08 -11.54 -0.07 -2.08 15 15 C -0.18 -3.34 9.88 30.59 0.30 -3.04 15 16 C -0.17 -3.40 10.17 30.60 0.31 -3.09 15 17 C 0.18 6.89 10.56 84.73 0.90 7.78 15 18 N -0.60 -29.10 9.10 -197.88 -1.80 -30.90 15 19 H 0.28 14.60 8.31 -92.71 -0.77 13.83 15 20 H 0.40 23.07 8.01 -92.71 -0.74 22.32 15 21 H 0.19 4.96 8.06 -2.91 -0.02 4.94 15 22 H 0.13 2.33 8.14 -2.39 -0.02 2.31 15 23 H 0.11 1.68 8.14 -2.39 -0.02 1.66 15 24 H 0.09 1.80 6.26 -2.39 -0.01 1.78 15 25 H 0.08 1.77 8.14 -2.39 -0.02 1.75 15 26 H 0.11 1.72 8.14 -2.38 -0.02 1.70 15 27 H 0.17 5.25 6.16 -2.91 -0.02 5.23 15 Total: -1.00 -64.79 242.27 3.57 -61.22 By element: Atomic # 1 Polarization: 30.10 SS G_CDS: 0.45 Total: 30.55 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: 5.73 Total: 7.98 kcal Atomic # 7 Polarization: -139.81 SS G_CDS: -4.64 Total: -144.45 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Total: -64.79 3.57 -61.22 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155534354.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.642 kcal (2) G-P(sol) polarization free energy of solvation -64.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.217 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds