Wall clock time and date at job start Sun Mar 29 2020 22:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38710 * 119.27946 * 2 1 4 4 C 1.37980 * 119.61136 * 179.78988 * 3 2 1 5 5 C 1.41033 * 118.27626 * 0.47205 * 4 3 2 6 6 C 1.41032 * 120.70459 * 179.73286 * 5 4 3 7 7 H 1.07999 * 119.99638 * 204.90391 * 6 5 4 8 8 C 1.39949 * 119.99915 * 24.89764 * 6 5 4 9 9 N 1.30859 * 120.00610 * 14.48834 * 8 6 5 10 10 Si 1.86804 * 119.99915 * 194.48705 * 8 6 5 11 11 H 1.48506 * 109.47068 * 0.02562 * 10 8 6 12 12 H 1.48496 * 109.47422 * 120.00201 * 10 8 6 13 13 H 1.48504 * 109.47012 * 240.00221 * 10 8 6 14 14 C 1.41636 * 118.59156 * 359.74924 * 5 4 3 15 15 N 1.38413 * 119.89910 * 180.02562 * 14 5 4 16 16 C 1.37294 * 120.00068 * 180.02562 * 15 14 5 17 17 N 1.29296 * 119.99955 * 359.97438 * 16 15 14 18 18 N 1.31940 * 119.27721 * 180.26894 * 2 1 3 19 19 H 1.08999 * 109.47149 * 269.73042 * 1 2 3 20 20 H 1.08997 * 109.46959 * 29.72915 * 1 2 3 21 21 H 1.08999 * 109.47060 * 149.73024 * 1 2 3 22 22 H 1.07998 * 120.18917 * 359.97438 * 3 2 1 23 23 H 1.07999 * 120.86448 * 180.19609 * 4 3 2 24 24 H 0.96993 * 120.00126 * 179.97438 * 9 8 6 25 25 H 0.96999 * 119.99948 * 0.02562 * 15 14 5 26 26 H 1.08001 * 120.00402 * 179.97438 * 16 15 14 27 27 H 0.97000 * 119.99708 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1854 1.2099 0.0000 4 6 3.5652 1.2179 0.0044 5 6 4.2405 -0.0202 -0.0015 6 6 5.6499 -0.0718 -0.0030 7 1 6.1580 -0.9377 -0.4010 8 6 6.3898 0.9991 0.5111 9 7 5.8005 1.9105 1.2422 10 14 8.2188 1.1275 0.1536 11 1 8.6400 -0.0197 -0.6902 12 1 8.4949 2.3974 -0.5648 13 1 8.9755 1.1070 1.4313 14 6 3.4732 -1.2108 -0.0061 15 7 4.1081 -2.4407 -0.0114 16 6 3.3664 -3.5961 -0.0164 17 7 2.0749 -3.5352 -0.0157 18 7 2.1522 -1.1509 -0.0054 19 1 -0.3633 -0.0048 1.0276 20 1 -0.3633 0.8924 -0.5096 21 1 -0.3633 -0.8875 -0.5180 22 1 1.6368 2.1401 -0.0004 23 1 4.1138 2.1481 0.0077 24 1 6.3135 2.6525 1.5987 25 1 5.0770 -2.4864 -0.0115 26 1 3.8618 -4.5558 -0.0209 27 1 1.5510 -4.3515 -0.0197 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157079943.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:57 Heat of formation + Delta-G solvation = 64.172226 kcal Electronic energy + Delta-G solvation = -12867.536169 eV Core-core repulsion = 10625.825963 eV Total energy + Delta-G solvation = -2241.710206 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 205.091 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.73727 -36.00277 -34.17772 -32.01689 -30.53721 -29.46427 -27.58913 -24.24514 -22.22157 -20.77810 -19.65464 -17.34100 -16.93876 -15.50876 -15.12207 -14.13597 -13.81135 -13.60588 -13.38789 -12.51634 -12.29668 -11.87415 -11.53839 -11.40613 -11.33346 -10.78998 -10.76912 -10.45122 -9.82531 -9.31518 -8.56728 -8.54556 -7.87413 -7.37236 -6.84857 -6.59291 -4.30805 2.63129 2.96163 3.04090 3.07516 3.25454 3.74145 3.87728 4.20535 4.67364 5.47666 5.72965 5.94205 6.26294 6.42880 6.50979 6.59141 6.70639 6.79658 7.05320 7.10052 7.25080 7.68134 7.76478 7.98734 8.13541 8.33443 8.60211 8.74104 8.92584 9.36361 9.95882 10.15582 Molecular weight = 205.09amu Principal moments of inertia in cm(-1) A = 0.034883 B = 0.011949 C = 0.009111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.483067 B = 2342.762087 C = 3072.469991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.013 3.987 3 C -0.173 4.173 4 C -0.126 4.126 5 C 0.043 3.957 6 C -0.460 4.460 7 H 0.076 0.924 8 C 0.075 3.925 9 N -0.797 5.797 10 Si 0.910 3.090 11 H -0.261 1.261 12 H -0.273 1.273 13 H -0.275 1.275 14 C 0.252 3.748 15 N -0.630 5.630 16 C 0.355 3.645 17 N -0.714 5.714 18 N -0.435 5.435 19 H 0.047 0.953 20 H 0.048 0.952 21 H 0.057 0.943 22 H 0.095 0.905 23 H 0.129 0.871 24 H 0.280 0.720 25 H 0.417 0.583 26 H 0.097 0.903 27 H 0.320 0.680 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.570 -3.601 -1.530 3.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.124 4.124 3 C -0.195 4.195 4 C -0.153 4.153 5 C 0.036 3.964 6 C -0.491 4.491 7 H 0.094 0.906 8 C -0.142 4.142 9 N -0.423 5.423 10 Si 0.734 3.266 11 H -0.185 1.185 12 H -0.198 1.198 13 H -0.200 1.200 14 C 0.017 3.983 15 N -0.263 5.263 16 C 0.050 3.950 17 N -0.342 5.342 18 N -0.149 5.149 19 H 0.066 0.934 20 H 0.067 0.933 21 H 0.076 0.924 22 H 0.113 0.887 23 H 0.147 0.853 24 H 0.091 0.909 25 H 0.255 0.745 26 H 0.113 0.887 27 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -0.627 -3.393 -1.390 3.720 hybrid contribution 2.092 -0.097 0.003 2.095 sum 1.466 -3.490 -1.388 4.032 Atomic orbital electron populations 1.20245 0.91765 1.00562 1.00265 1.20270 0.94845 0.88077 1.09253 1.21422 0.95413 0.96965 1.05686 1.21434 0.92180 0.98290 1.03395 1.17989 0.93861 0.90227 0.94302 1.19213 0.90754 1.03012 1.36116 0.90621 1.25838 1.01005 0.94748 0.92630 1.69804 1.38324 1.10479 1.23655 0.86240 0.81936 0.79371 0.79029 1.18468 1.19779 1.20047 1.18449 0.88553 0.84535 1.06742 1.41554 1.08187 1.01799 1.74784 1.22598 0.91211 0.88100 0.93066 1.69456 1.05462 1.34842 1.24471 1.66879 1.07503 1.27645 1.12838 0.93414 0.93292 0.92424 0.88690 0.85303 0.90890 0.74549 0.88684 0.86567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.40 10.15 36.01 0.37 -1.03 15 2 C 0.01 0.33 6.79 -82.37 -0.56 -0.23 15 3 C -0.17 -4.20 9.69 -39.50 -0.38 -4.58 15 4 C -0.13 -3.30 8.79 -38.62 -0.34 -3.64 15 5 C 0.04 1.13 5.60 -106.48 -0.60 0.53 15 6 C -0.46 -11.44 8.54 -37.88 -0.32 -11.76 15 7 H 0.08 1.73 6.67 -52.49 -0.35 1.38 15 8 C 0.07 1.80 5.23 -17.33 -0.09 1.71 15 9 N -0.80 -20.04 10.83 55.55 0.60 -19.44 15 10 Si 0.91 17.82 29.58 -169.99 -5.03 12.79 15 11 H -0.26 -4.99 7.11 56.52 0.40 -4.59 15 12 H -0.27 -5.33 7.11 56.52 0.40 -4.93 15 13 H -0.28 -5.35 7.11 56.52 0.40 -4.95 15 14 C 0.25 6.38 7.48 -154.77 -1.16 5.22 15 15 N -0.63 -13.18 5.40 -12.75 -0.07 -13.25 15 16 C 0.36 6.55 12.57 -89.27 -1.12 5.42 15 17 N -0.71 -14.59 11.34 29.84 0.34 -14.25 15 18 N -0.44 -11.18 7.58 -8.06 -0.06 -11.24 15 19 H 0.05 0.89 8.14 -51.93 -0.42 0.47 15 20 H 0.05 0.84 8.07 -51.93 -0.42 0.42 15 21 H 0.06 1.13 8.14 -51.93 -0.42 0.71 15 22 H 0.09 2.04 8.06 -52.49 -0.42 1.62 15 23 H 0.13 3.42 6.17 -52.49 -0.32 3.09 15 24 H 0.28 6.41 8.30 -40.82 -0.34 6.07 15 25 H 0.42 7.72 7.02 -40.82 -0.29 7.43 15 26 H 0.10 1.28 8.06 -52.49 -0.42 0.85 15 27 H 0.32 5.52 8.92 -40.82 -0.36 5.15 15 LS Contribution 238.44 15.07 3.59 3.59 Total: -1.00 -30.04 238.44 -7.40 -37.44 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -2.57 Total: 12.73 kcal Atomic # 6 Polarization: -4.17 SS G_CDS: -4.21 Total: -8.37 kcal Atomic # 7 Polarization: -58.99 SS G_CDS: 0.81 Total: -58.18 kcal Atomic # 14 Polarization: 17.82 SS G_CDS: -5.03 Total: 12.79 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -30.04 -7.40 -37.44 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157079943.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.611 kcal (2) G-P(sol) polarization free energy of solvation -30.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds