Wall clock time and date at job start Sun Mar 29 2020 22:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38710 * 119.27946 * 2 1 4 4 C 1.37980 * 119.61136 * 179.78988 * 3 2 1 5 5 C 1.41033 * 118.27626 * 0.47205 * 4 3 2 6 6 C 1.41032 * 120.70459 * 179.73286 * 5 4 3 7 7 H 1.07999 * 119.99638 * 204.90391 * 6 5 4 8 8 C 1.39949 * 119.99915 * 24.89764 * 6 5 4 9 9 N 1.30859 * 120.00610 * 14.48834 * 8 6 5 10 10 Si 1.86804 * 119.99915 * 194.48705 * 8 6 5 11 11 H 1.48506 * 109.47068 * 0.02562 * 10 8 6 12 12 H 1.48496 * 109.47422 * 120.00201 * 10 8 6 13 13 H 1.48504 * 109.47012 * 240.00221 * 10 8 6 14 14 C 1.41636 * 118.59156 * 359.74924 * 5 4 3 15 15 N 1.38413 * 119.89910 * 180.02562 * 14 5 4 16 16 C 1.37294 * 120.00068 * 180.02562 * 15 14 5 17 17 N 1.29296 * 119.99955 * 359.97438 * 16 15 14 18 18 N 1.31940 * 119.27721 * 180.26894 * 2 1 3 19 19 H 1.08999 * 109.47149 * 269.73042 * 1 2 3 20 20 H 1.08997 * 109.46959 * 29.72915 * 1 2 3 21 21 H 1.08999 * 109.47060 * 149.73024 * 1 2 3 22 22 H 1.07998 * 120.18917 * 359.97438 * 3 2 1 23 23 H 1.07999 * 120.86448 * 180.19609 * 4 3 2 24 24 H 0.96993 * 120.00126 * 179.97438 * 9 8 6 25 25 H 0.96999 * 119.99948 * 0.02562 * 15 14 5 26 26 H 1.08001 * 120.00402 * 179.97438 * 16 15 14 27 27 H 0.97000 * 119.99708 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1854 1.2099 0.0000 4 6 3.5652 1.2179 0.0044 5 6 4.2405 -0.0202 -0.0015 6 6 5.6499 -0.0718 -0.0030 7 1 6.1580 -0.9377 -0.4010 8 6 6.3898 0.9991 0.5111 9 7 5.8005 1.9105 1.2422 10 14 8.2188 1.1275 0.1536 11 1 8.6400 -0.0197 -0.6902 12 1 8.4949 2.3974 -0.5648 13 1 8.9755 1.1070 1.4313 14 6 3.4732 -1.2108 -0.0061 15 7 4.1081 -2.4407 -0.0114 16 6 3.3664 -3.5961 -0.0164 17 7 2.0749 -3.5352 -0.0157 18 7 2.1522 -1.1509 -0.0054 19 1 -0.3633 -0.0048 1.0276 20 1 -0.3633 0.8924 -0.5096 21 1 -0.3633 -0.8875 -0.5180 22 1 1.6368 2.1401 -0.0004 23 1 4.1138 2.1481 0.0077 24 1 6.3135 2.6525 1.5987 25 1 5.0770 -2.4864 -0.0115 26 1 3.8618 -4.5558 -0.0209 27 1 1.5510 -4.3515 -0.0197 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157079943.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:57 Heat of formation + Delta-G solvation = 46.555860 kcal Electronic energy + Delta-G solvation = -12868.300072 eV Core-core repulsion = 10625.825963 eV Total energy + Delta-G solvation = -2242.474109 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 205.091 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.54067 -37.63337 -36.00342 -33.67881 -32.37176 -31.19466 -29.37987 -26.02394 -23.96272 -22.59739 -21.33425 -19.16326 -18.59376 -17.22923 -16.81667 -15.75255 -15.54491 -15.29588 -15.14270 -14.23862 -13.87245 -13.68313 -13.25351 -13.11969 -12.91956 -12.48911 -12.41684 -12.08968 -11.62722 -11.10359 -10.27637 -10.19233 -9.75651 -9.09519 -8.64603 -8.37971 -6.18831 0.83909 1.19497 1.44373 1.56301 1.58934 2.20664 2.23722 2.66360 2.86015 3.85269 4.12692 4.37697 4.55174 4.74924 4.77544 5.02129 5.06789 5.09457 5.25709 5.33923 5.44915 5.86019 5.90360 6.13754 6.42373 6.63368 6.77976 6.89494 7.12389 7.87161 8.19763 8.38214 Molecular weight = 205.09amu Principal moments of inertia in cm(-1) A = 0.034883 B = 0.011949 C = 0.009111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.483067 B = 2342.762087 C = 3072.469991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.005 4.005 3 C -0.182 4.182 4 C -0.154 4.154 5 C 0.013 3.987 6 C -0.480 4.480 7 H 0.091 0.909 8 C 0.032 3.968 9 N -0.831 5.831 10 Si 0.987 3.013 11 H -0.250 1.250 12 H -0.272 1.272 13 H -0.270 1.270 14 C 0.240 3.760 15 N -0.632 5.632 16 C 0.355 3.645 17 N -0.754 5.754 18 N -0.452 5.452 19 H 0.057 0.943 20 H 0.074 0.926 21 H 0.056 0.944 22 H 0.117 0.883 23 H 0.116 0.884 24 H 0.286 0.714 25 H 0.425 0.575 26 H 0.159 0.841 27 H 0.336 0.664 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.315 -4.594 -1.785 5.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.142 4.142 3 C -0.203 4.203 4 C -0.180 4.180 5 C 0.006 3.994 6 C -0.510 4.510 7 H 0.108 0.892 8 C -0.182 4.182 9 N -0.458 5.458 10 Si 0.808 3.192 11 H -0.173 1.173 12 H -0.197 1.197 13 H -0.195 1.195 14 C 0.004 3.996 15 N -0.266 5.266 16 C 0.051 3.949 17 N -0.384 5.384 18 N -0.167 5.167 19 H 0.076 0.924 20 H 0.093 0.907 21 H 0.075 0.925 22 H 0.135 0.865 23 H 0.133 0.867 24 H 0.097 0.903 25 H 0.265 0.735 26 H 0.175 0.825 27 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.098 -4.420 -1.647 4.718 hybrid contribution 1.792 0.163 0.100 1.802 sum 1.890 -4.257 -1.546 4.908 Atomic orbital electron populations 1.20258 0.88748 1.01790 1.01268 1.21026 0.97041 0.87856 1.08285 1.21658 0.94998 0.98197 1.05489 1.21481 0.93175 0.98093 1.05268 1.18362 0.94981 0.90818 0.95204 1.19545 0.90641 1.04244 1.36612 0.89151 1.26758 1.05715 0.93918 0.91785 1.69881 1.40402 1.11150 1.24360 0.85082 0.75770 0.79469 0.78918 1.17309 1.19723 1.19548 1.18851 0.88751 0.86059 1.05925 1.41687 1.08842 1.01301 1.74799 1.23272 0.91212 0.89025 0.91372 1.69311 1.07190 1.36772 1.25086 1.67062 1.07719 1.28202 1.13692 0.92380 0.90726 0.92517 0.86495 0.86666 0.90295 0.73534 0.82465 0.84816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.40 10.15 71.24 0.72 -1.68 15 2 C 0.00 -0.24 6.79 42.66 0.29 0.05 15 3 C -0.18 -8.90 9.69 22.32 0.22 -8.68 15 4 C -0.15 -8.23 8.79 22.89 0.20 -8.03 15 5 C 0.01 0.70 5.60 -21.07 -0.12 0.58 15 6 C -0.48 -23.92 8.54 23.37 0.20 -23.72 15 7 H 0.09 4.06 6.67 -2.91 -0.02 4.04 15 8 C 0.03 1.55 5.23 85.25 0.45 1.99 15 9 N -0.83 -42.41 10.83 21.83 0.24 -42.18 15 10 Si 0.99 35.97 29.58 68.60 2.03 38.00 15 11 H -0.25 -8.59 7.11 99.48 0.71 -7.88 15 12 H -0.27 -9.83 7.11 99.48 0.71 -9.12 15 13 H -0.27 -9.59 7.11 99.48 0.71 -8.89 15 14 C 0.24 12.17 7.48 133.94 1.00 13.17 15 15 N -0.63 -25.68 5.40 -194.25 -1.05 -26.72 15 16 C 0.35 12.22 12.57 179.88 2.26 14.49 15 17 N -0.75 -29.58 11.34 -59.51 -0.68 -30.25 15 18 N -0.45 -23.17 7.58 -179.40 -1.36 -24.53 15 19 H 0.06 2.08 8.14 -2.39 -0.02 2.06 15 20 H 0.07 2.42 8.07 -2.39 -0.02 2.40 15 21 H 0.06 2.15 8.14 -2.39 -0.02 2.13 15 22 H 0.12 5.00 8.06 -2.91 -0.02 4.97 15 23 H 0.12 6.35 6.17 -2.91 -0.02 6.33 15 24 H 0.29 13.25 8.30 -92.71 -0.77 12.48 15 25 H 0.43 15.17 7.02 -92.71 -0.65 14.52 15 26 H 0.16 3.50 8.06 -2.91 -0.02 3.47 15 27 H 0.34 10.97 8.92 -92.71 -0.83 10.14 15 Total: -1.00 -64.99 238.44 4.14 -60.85 By element: Atomic # 1 Polarization: 36.93 SS G_CDS: -0.27 Total: 36.66 kcal Atomic # 6 Polarization: -17.05 SS G_CDS: 5.22 Total: -11.83 kcal Atomic # 7 Polarization: -120.84 SS G_CDS: -2.85 Total: -123.69 kcal Atomic # 14 Polarization: 35.97 SS G_CDS: 2.03 Total: 38.00 kcal Total: -64.99 4.14 -60.85 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157079943.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.407 kcal (2) G-P(sol) polarization free energy of solvation -64.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.851 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds