Wall clock time and date at job start Sun Mar 29 2020 22:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31458 * 119.82095 * 2 1 4 4 C 1.32714 * 121.74075 * 180.02562 * 3 2 1 5 5 N 1.38669 * 119.42290 * 179.97438 * 4 3 2 6 6 C 1.35507 * 119.99897 * 180.02562 * 5 4 3 7 7 N 5.69836 * 153.71433 * 359.97438 * 2 1 3 8 8 C 1.39641 * 121.15556 * 0.27470 * 4 3 2 9 9 C 1.36594 * 119.49210 * 359.42450 * 8 4 3 10 10 C 1.40787 * 119.81851 * 179.97438 * 2 1 3 11 11 C 1.41189 * 120.57381 * 0.02562 * 10 2 1 12 12 H 1.07999 * 120.00216 * 24.88064 * 11 10 2 13 13 C 1.39889 * 119.99814 * 204.87999 * 11 10 2 14 14 N 1.30882 * 120.00188 * 14.65794 * 13 11 10 15 15 Si 1.86800 * 119.99888 * 194.65655 * 13 11 10 16 16 H 1.48504 * 109.47240 * 90.00015 * 15 13 11 17 17 H 1.48498 * 109.47190 * 209.99908 * 15 13 11 18 18 H 1.48504 * 109.47397 * 330.00346 * 15 13 11 19 19 H 1.08994 * 109.47110 * 89.99814 * 1 2 3 20 20 H 1.09000 * 109.46826 * 210.00403 * 1 2 3 21 21 H 1.09004 * 109.46371 * 330.00048 * 1 2 3 22 22 H 0.96996 * 120.00245 * 0.27612 * 5 4 3 23 23 H 1.07997 * 120.25076 * 179.72729 * 8 4 3 24 24 H 1.08004 * 120.80057 * 180.26455 * 9 8 4 25 25 H 0.97000 * 120.00194 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1607 1.1405 0.0000 4 6 3.4871 1.1850 -0.0005 5 7 4.1275 2.4149 -0.0010 6 6 5.4813 2.4739 -0.0021 7 7 6.6162 2.5235 -0.0011 8 6 4.2492 0.0149 -0.0068 9 6 3.6200 -1.1975 -0.0006 10 6 2.2071 -1.2215 0.0005 11 6 1.5095 -2.4490 0.0006 12 1 0.5052 -2.4994 -0.3933 13 6 2.1193 -3.6000 0.5107 14 7 3.2011 -3.4988 1.2405 15 14 1.3896 -5.2814 0.1506 16 1 1.9834 -5.8215 -1.0988 17 1 1.6864 -6.2016 1.2777 18 1 -0.0812 -5.1580 -0.0136 19 1 -0.3633 0.0000 -1.0276 20 1 -0.3633 -0.8900 0.5139 21 1 -0.3632 0.8901 0.5139 22 1 3.6064 3.2330 0.0030 23 1 5.3279 0.0681 -0.0116 24 1 4.1886 -2.1157 -0.0010 25 1 3.6238 -4.2968 1.5945 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157824945.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:10 Heat of formation + Delta-G solvation = 58.518017 kcal Electronic energy + Delta-G solvation = -12125.959745 eV Core-core repulsion = 9911.315833 eV Total energy + Delta-G solvation = -2214.643912 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.09292 -36.76882 -34.54994 -33.43036 -31.32730 -30.24062 -27.04784 -24.88957 -21.87577 -21.31419 -18.48213 -17.53982 -17.05155 -15.34647 -14.61171 -14.30643 -13.85396 -13.09734 -13.05860 -12.89467 -12.13505 -11.86083 -11.72674 -11.61120 -11.46451 -11.29173 -11.00501 -10.69368 -9.92505 -9.67214 -9.14096 -8.44427 -8.29802 -7.20587 -6.89724 -4.47669 2.41663 2.77282 2.95390 2.98826 3.01697 3.02514 3.34414 3.65203 3.79768 4.50140 5.43850 5.70440 5.93499 6.20072 6.30598 6.56442 6.62849 6.81034 6.89567 6.98119 7.20275 7.29346 7.65190 7.78064 7.97689 8.30917 8.45522 8.60251 8.61855 9.40028 9.99469 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.045359 B = 0.009646 C = 0.008115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.145592 B = 2902.068583 C = 3449.561792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.030 3.970 3 N -0.489 5.489 4 C 0.230 3.770 5 N -0.594 5.594 6 C 0.431 3.569 7 N -0.459 5.459 8 C -0.176 4.176 9 C -0.101 4.101 10 C 0.052 3.948 11 C -0.441 4.441 12 H 0.087 0.913 13 C 0.071 3.929 14 N -0.792 5.792 15 Si 0.914 3.086 16 H -0.267 1.267 17 H -0.277 1.277 18 H -0.260 1.260 19 H 0.050 0.950 20 H 0.070 0.930 21 H 0.050 0.950 22 H 0.422 0.578 23 H 0.100 0.900 24 H 0.134 0.866 25 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.054 1.449 -1.408 3.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.111 4.111 3 N -0.203 5.203 4 C 0.001 3.999 5 N -0.233 5.233 6 C 0.025 3.975 7 N -0.157 5.157 8 C -0.199 4.199 9 C -0.127 4.127 10 C 0.047 3.953 11 C -0.470 4.470 12 H 0.105 0.895 13 C -0.147 4.147 14 N -0.417 5.417 15 Si 0.738 3.262 16 H -0.192 1.192 17 H -0.202 1.202 18 H -0.184 1.184 19 H 0.069 0.931 20 H 0.089 0.911 21 H 0.069 0.931 22 H 0.262 0.738 23 H 0.118 0.882 24 H 0.152 0.848 25 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.695 2.023 -1.260 2.924 hybrid contribution -0.371 -1.245 -0.021 1.299 sum -2.065 0.778 -1.280 2.551 Atomic orbital electron populations 1.20263 0.90520 1.01445 1.00576 1.20719 0.94855 0.86853 1.08629 1.66025 1.06502 1.31817 1.15909 1.17259 0.88697 0.82627 1.11329 1.38775 0.96836 1.08192 1.79540 1.23331 0.86440 0.95994 0.91696 1.81871 1.05596 1.05713 1.22530 1.20838 0.98398 0.92786 1.07896 1.21346 0.94872 0.96204 1.00298 1.18296 0.92228 0.93272 0.91542 1.19525 1.01520 0.91732 1.34268 0.89491 1.25997 0.94383 1.01799 0.92526 1.69783 1.16996 1.32051 1.22912 0.86198 0.80549 0.80412 0.79001 1.19172 1.20202 1.18358 0.93109 0.91131 0.93081 0.73792 0.88232 0.84797 0.90468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.35 9.58 36.01 0.34 -1.01 15 2 C 0.03 0.70 6.86 -81.79 -0.56 0.14 15 3 N -0.49 -11.00 10.29 -7.99 -0.08 -11.08 15 4 C 0.23 5.00 7.61 -154.89 -1.18 3.82 15 5 N -0.59 -10.55 5.42 19.27 0.10 -10.45 15 6 C 0.43 7.81 14.91 -102.19 -1.52 6.28 15 7 N -0.46 -8.75 18.54 41.27 0.77 -7.98 15 8 C -0.18 -4.05 9.25 -39.65 -0.37 -4.42 15 9 C -0.10 -2.50 8.73 -39.01 -0.34 -2.84 15 10 C 0.05 1.28 5.59 -106.65 -0.60 0.69 15 11 C -0.44 -10.58 8.16 -37.84 -0.31 -10.89 15 12 H 0.09 1.96 6.84 -52.49 -0.36 1.60 15 13 C 0.07 1.65 5.22 -17.34 -0.09 1.56 15 14 N -0.79 -19.16 10.83 55.54 0.60 -18.55 15 15 Si 0.91 17.30 29.58 -169.99 -5.03 12.27 15 16 H -0.27 -5.03 7.11 56.52 0.40 -4.63 15 17 H -0.28 -5.19 7.11 56.52 0.40 -4.79 15 18 H -0.26 -4.82 7.11 56.52 0.40 -4.41 15 19 H 0.05 0.89 8.14 -51.93 -0.42 0.47 15 20 H 0.07 1.33 6.75 -51.93 -0.35 0.98 15 21 H 0.05 0.90 8.14 -51.93 -0.42 0.48 15 22 H 0.42 6.16 8.93 -40.82 -0.36 5.80 15 23 H 0.10 2.20 6.96 -52.49 -0.37 1.83 15 24 H 0.13 3.38 6.17 -52.48 -0.32 3.06 15 25 H 0.28 6.27 8.30 -40.82 -0.34 5.93 15 LS Contribution 232.12 15.07 3.50 3.50 Total: -1.00 -26.13 232.12 -6.51 -32.64 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -1.74 Total: 6.32 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: -4.62 Total: -6.66 kcal Atomic # 7 Polarization: -49.45 SS G_CDS: 1.39 Total: -48.06 kcal Atomic # 14 Polarization: 17.30 SS G_CDS: -5.03 Total: 12.27 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -26.13 -6.51 -32.64 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157824945.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.155 kcal (2) G-P(sol) polarization free energy of solvation -26.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.637 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds