Wall clock time and date at job start Sun Mar 29 2020 22:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31458 * 119.82095 * 2 1 4 4 C 1.32714 * 121.74075 * 180.02562 * 3 2 1 5 5 N 1.38669 * 119.42290 * 179.97438 * 4 3 2 6 6 C 1.35507 * 119.99897 * 180.02562 * 5 4 3 7 7 N 5.69836 * 153.71433 * 359.97438 * 2 1 3 8 8 C 1.39641 * 121.15556 * 0.27470 * 4 3 2 9 9 C 1.36594 * 119.49210 * 359.42450 * 8 4 3 10 10 C 1.40787 * 119.81851 * 179.97438 * 2 1 3 11 11 C 1.41189 * 120.57381 * 0.02562 * 10 2 1 12 12 H 1.07999 * 120.00216 * 24.88064 * 11 10 2 13 13 C 1.39889 * 119.99814 * 204.87999 * 11 10 2 14 14 N 1.30882 * 120.00188 * 14.65794 * 13 11 10 15 15 Si 1.86800 * 119.99888 * 194.65655 * 13 11 10 16 16 H 1.48504 * 109.47240 * 90.00015 * 15 13 11 17 17 H 1.48498 * 109.47190 * 209.99908 * 15 13 11 18 18 H 1.48504 * 109.47397 * 330.00346 * 15 13 11 19 19 H 1.08994 * 109.47110 * 89.99814 * 1 2 3 20 20 H 1.09000 * 109.46826 * 210.00403 * 1 2 3 21 21 H 1.09004 * 109.46371 * 330.00048 * 1 2 3 22 22 H 0.96996 * 120.00245 * 0.27612 * 5 4 3 23 23 H 1.07997 * 120.25076 * 179.72729 * 8 4 3 24 24 H 1.08004 * 120.80057 * 180.26455 * 9 8 4 25 25 H 0.97000 * 120.00194 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1607 1.1405 0.0000 4 6 3.4871 1.1850 -0.0005 5 7 4.1275 2.4149 -0.0010 6 6 5.4813 2.4739 -0.0021 7 7 6.6162 2.5235 -0.0011 8 6 4.2492 0.0149 -0.0068 9 6 3.6200 -1.1975 -0.0006 10 6 2.2071 -1.2215 0.0005 11 6 1.5095 -2.4490 0.0006 12 1 0.5052 -2.4994 -0.3933 13 6 2.1193 -3.6000 0.5107 14 7 3.2011 -3.4988 1.2405 15 14 1.3896 -5.2814 0.1506 16 1 1.9834 -5.8215 -1.0988 17 1 1.6864 -6.2016 1.2777 18 1 -0.0812 -5.1580 -0.0136 19 1 -0.3633 0.0000 -1.0276 20 1 -0.3633 -0.8900 0.5139 21 1 -0.3632 0.8901 0.5139 22 1 3.6064 3.2330 0.0030 23 1 5.3279 0.0681 -0.0116 24 1 4.1886 -2.1157 -0.0010 25 1 3.6238 -4.2968 1.5945 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157824945.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:10 Heat of formation + Delta-G solvation = 46.419046 kcal Electronic energy + Delta-G solvation = -12126.484396 eV Core-core repulsion = 9911.315833 eV Total energy + Delta-G solvation = -2215.168563 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.82753 -38.36050 -36.21810 -35.08603 -33.07734 -31.96019 -28.73965 -26.62184 -23.61734 -23.04152 -20.08916 -19.28933 -18.74273 -17.03132 -16.37332 -15.89360 -15.50377 -14.68255 -14.66357 -14.53804 -13.80121 -13.60426 -13.33917 -13.21441 -13.08599 -12.83945 -12.60098 -12.21929 -11.64396 -11.34590 -10.79434 -10.24186 -10.09982 -8.95257 -8.62020 -6.27714 0.65925 0.95788 1.37399 1.44726 1.51624 1.57414 1.89361 2.11200 2.22433 2.77141 3.64389 4.01450 4.23937 4.46356 4.59742 5.02980 5.06053 5.10722 5.21061 5.29745 5.52244 5.61219 5.87643 5.99323 6.34623 6.55488 6.79022 6.82750 6.96719 7.63197 8.29510 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.045359 B = 0.009646 C = 0.008115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.145592 B = 2902.068583 C = 3449.561792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.023 3.977 3 N -0.491 5.491 4 C 0.236 3.764 5 N -0.579 5.579 6 C 0.441 3.559 7 N -0.469 5.469 8 C -0.187 4.187 9 C -0.122 4.122 10 C 0.022 3.978 11 C -0.463 4.463 12 H 0.097 0.903 13 C 0.032 3.968 14 N -0.827 5.827 15 Si 0.985 3.015 16 H -0.266 1.266 17 H -0.274 1.274 18 H -0.250 1.250 19 H 0.068 0.932 20 H 0.070 0.930 21 H 0.066 0.934 22 H 0.439 0.561 23 H 0.104 0.896 24 H 0.119 0.881 25 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.079 1.589 -1.672 4.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.119 4.119 3 N -0.205 5.205 4 C 0.006 3.994 5 N -0.220 5.220 6 C 0.036 3.964 7 N -0.167 5.167 8 C -0.210 4.210 9 C -0.148 4.148 10 C 0.017 3.983 11 C -0.492 4.492 12 H 0.115 0.885 13 C -0.183 4.183 14 N -0.453 5.453 15 Si 0.806 3.194 16 H -0.190 1.190 17 H -0.199 1.199 18 H -0.173 1.173 19 H 0.086 0.914 20 H 0.089 0.911 21 H 0.085 0.915 22 H 0.283 0.717 23 H 0.122 0.878 24 H 0.137 0.863 25 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.716 2.211 -1.525 3.820 hybrid contribution 0.001 -1.196 0.068 1.198 sum -2.716 1.015 -1.457 3.245 Atomic orbital electron populations 1.20295 0.87878 1.02230 1.01909 1.21340 0.96777 0.86492 1.07251 1.66185 1.06525 1.31469 1.16288 1.17391 0.88686 0.83534 1.09741 1.38553 0.96701 1.07710 1.79052 1.23208 0.86329 0.95549 0.91317 1.81888 1.05953 1.06136 1.22694 1.20921 0.98753 0.93003 1.08358 1.21327 0.95343 0.96319 1.01799 1.18646 0.92477 0.94554 0.92663 1.19805 1.02197 0.92211 1.35021 0.88517 1.26835 0.94531 1.05198 0.91743 1.69849 1.18324 1.33287 1.23824 0.85137 0.80099 0.75598 0.78610 1.19043 1.19900 1.17321 0.91365 0.91087 0.91487 0.71716 0.87794 0.86287 0.89970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.39 9.58 71.24 0.68 -1.71 15 2 C 0.02 1.02 6.86 43.24 0.30 1.32 15 3 N -0.49 -21.37 10.29 -179.20 -1.84 -23.21 15 4 C 0.24 10.01 7.61 133.21 1.01 11.03 15 5 N -0.58 -19.49 5.42 -92.94 -0.50 -20.00 15 6 C 0.44 15.29 14.91 184.39 2.75 18.04 15 7 N -0.47 -17.22 18.54 17.21 0.32 -16.90 15 8 C -0.19 -8.62 9.25 22.22 0.21 -8.41 15 9 C -0.12 -6.12 8.73 22.64 0.20 -5.92 15 10 C 0.02 1.08 5.59 -21.18 -0.12 0.96 15 11 C -0.46 -22.17 8.16 23.39 0.19 -21.97 15 12 H 0.10 4.28 6.84 -2.91 -0.02 4.26 15 13 C 0.03 1.48 5.22 85.23 0.45 1.92 15 14 N -0.83 -40.54 10.83 21.82 0.24 -40.30 15 15 Si 0.98 34.90 29.58 68.60 2.03 36.93 15 16 H -0.27 -9.29 7.11 99.48 0.71 -8.58 15 17 H -0.27 -9.49 7.11 99.48 0.71 -8.79 15 18 H -0.25 -8.39 7.11 99.48 0.71 -7.68 15 19 H 0.07 2.24 8.14 -2.39 -0.02 2.22 15 20 H 0.07 2.57 6.75 -2.39 -0.02 2.55 15 21 H 0.07 2.20 8.14 -2.38 -0.02 2.18 15 22 H 0.44 11.78 8.93 -92.71 -0.83 10.96 15 23 H 0.10 4.59 6.96 -2.91 -0.02 4.57 15 24 H 0.12 6.24 6.17 -2.91 -0.02 6.22 15 25 H 0.29 12.93 8.30 -92.71 -0.77 12.16 15 Total: -1.00 -54.46 232.12 6.31 -48.15 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: 0.41 Total: 20.07 kcal Atomic # 6 Polarization: -10.41 SS G_CDS: 5.66 Total: -4.75 kcal Atomic # 7 Polarization: -98.62 SS G_CDS: -1.79 Total: -100.41 kcal Atomic # 14 Polarization: 34.90 SS G_CDS: 2.03 Total: 36.93 kcal Total: -54.46 6.31 -48.15 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157824945.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.570 kcal (2) G-P(sol) polarization free energy of solvation -54.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds