Wall clock time and date at job start Sun Mar 29 2020 22:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47249 * 219.15681 * 3 2 1 5 5 C 1.38804 * 120.00247 * 180.02562 * 4 3 2 6 6 C 1.40081 * 120.75769 * 180.02562 * 5 4 3 7 7 N 1.31668 * 119.13739 * 180.02562 * 6 5 4 8 8 C 1.33595 * 120.78831 * 359.97438 * 7 6 5 9 9 C 1.41153 * 119.16706 * 180.02562 * 8 7 6 10 10 H 1.07999 * 120.00184 * 359.97438 * 9 8 7 11 11 C 1.40045 * 119.99823 * 180.02562 * 9 8 7 12 12 N 1.30730 * 120.00049 * 359.72575 * 11 9 8 13 13 Si 1.86795 * 119.99981 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47274 * 90.00237 * 13 11 9 15 15 H 1.48504 * 109.47383 * 209.99909 * 13 11 9 16 16 H 1.48502 * 109.47297 * 329.99872 * 13 11 9 17 17 N 1.33599 * 121.65831 * 0.27830 * 8 7 6 18 18 C 1.31651 * 120.79256 * 359.43897 * 17 8 7 19 19 H 1.08997 * 109.46902 * 99.15881 * 3 2 1 20 20 H 1.08998 * 109.47321 * 339.16066 * 3 2 1 21 21 H 0.97000 * 120.00052 * 0.02562 * 4 3 2 22 22 H 1.07995 * 120.43433 * 359.97438 * 6 5 4 23 23 H 0.97000 * 120.00283 * 180.02562 * 12 11 9 24 24 H 1.08001 * 120.43562 * 180.25207 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 7 3.0958 1.0719 0.8721 5 6 4.4604 1.2695 1.0319 6 6 4.9443 2.2886 1.8623 7 7 6.2450 2.4480 1.9903 8 6 7.0987 1.6520 1.3404 9 6 8.4863 1.8530 1.5028 10 1 8.8460 2.6427 2.1458 11 6 9.3968 1.0290 0.8294 12 7 8.9615 0.0703 0.0546 13 14 11.2331 1.2946 1.0450 14 1 11.7206 0.4794 2.1865 15 1 11.9415 0.8844 -0.1941 16 1 11.4975 2.7309 1.3138 17 7 6.6720 0.6737 0.5368 18 6 5.3851 0.4542 0.3668 19 1 2.9711 0.1644 -1.0145 20 1 2.9717 -0.9596 0.3656 21 1 2.4653 1.6431 1.3380 22 1 4.2594 2.9357 2.3900 23 1 9.5920 -0.5006 -0.4116 24 1 5.0466 -0.3408 -0.2811 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163183137.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:25 Heat of formation + Delta-G solvation = 62.450021 kcal Electronic energy + Delta-G solvation = -11966.520785 eV Core-core repulsion = 9686.621466 eV Total energy + Delta-G solvation = -2279.899319 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 204.071 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.81664 -38.21771 -36.53777 -35.15190 -33.58933 -31.42270 -28.89970 -26.44762 -24.67222 -22.95924 -19.74988 -19.38809 -17.48575 -17.26905 -16.79156 -16.07117 -16.01798 -15.51792 -14.83889 -14.39204 -13.94571 -13.82188 -13.35635 -13.23462 -12.93776 -12.80850 -12.48574 -11.88324 -11.48596 -11.23428 -11.08055 -10.69974 -9.14666 -8.50526 -8.26475 -6.29001 0.93941 1.11133 1.43388 1.48064 1.58131 1.62320 1.70822 2.31425 2.77627 2.90771 3.14975 4.05662 4.12943 4.22178 4.40586 4.57160 4.60719 4.75708 5.24765 5.38788 5.60470 6.29085 6.37649 6.51784 6.64638 6.84673 6.96937 7.39192 8.37449 8.55403 Molecular weight = 204.07amu Principal moments of inertia in cm(-1) A = 0.084147 B = 0.007017 C = 0.006499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 332.672242 B = 3989.618853 C = 4307.145528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C 0.236 3.764 3 C 0.231 3.769 4 N -0.739 5.739 5 C -0.007 4.007 6 C 0.089 3.911 7 N -0.594 5.594 8 C 0.340 3.660 9 C -0.457 4.457 10 H 0.079 0.921 11 C 0.029 3.971 12 N -0.759 5.759 13 Si 0.990 3.010 14 H -0.264 1.264 15 H -0.265 1.265 16 H -0.262 1.262 17 N -0.509 5.509 18 C 0.085 3.915 19 H 0.119 0.881 20 H 0.119 0.881 21 H 0.402 0.598 22 H 0.161 0.839 23 H 0.279 0.721 24 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.913 -1.851 -1.499 5.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.148 5.148 2 C -0.082 4.082 3 C 0.104 3.896 4 N -0.378 5.378 5 C -0.113 4.113 6 C -0.084 4.084 7 N -0.313 5.313 8 C 0.097 3.903 9 C -0.494 4.494 10 H 0.097 0.903 11 C -0.193 4.193 12 N -0.383 5.383 13 Si 0.810 3.190 14 H -0.188 1.188 15 H -0.189 1.189 16 H -0.185 1.185 17 N -0.226 5.226 18 C -0.091 4.091 19 H 0.136 0.864 20 H 0.136 0.864 21 H 0.237 0.763 22 H 0.178 0.822 23 H 0.090 0.910 24 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -5.514 -2.036 -1.661 6.108 hybrid contribution -0.196 0.219 0.194 0.352 sum -5.711 -1.817 -1.467 6.170 Atomic orbital electron populations 1.81252 1.14280 1.09346 1.09969 1.29293 0.95077 0.92040 0.91762 1.18745 0.78348 0.94221 0.98259 1.43252 1.01871 1.38100 1.54611 1.18985 0.85432 1.01812 1.05039 1.22799 0.92177 0.96323 0.97104 1.68562 1.03624 1.30992 1.28144 1.20075 0.94604 0.86940 0.88643 1.19358 0.88798 1.15443 1.25851 0.90283 1.26808 1.05780 0.93488 0.93200 1.70187 1.37589 1.12070 1.18482 0.85097 0.75370 0.79663 0.78834 1.18837 1.18898 1.18549 1.69208 1.14562 1.19854 1.18927 1.23317 0.88831 0.98530 0.98412 0.86400 0.86395 0.76329 0.82223 0.91001 0.81746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -12.38 18.54 20.01 0.37 -12.01 14 2 C 0.24 4.90 15.55 89.44 1.39 6.29 14 3 C 0.23 4.15 5.41 84.57 0.46 4.61 14 4 N -0.74 -18.29 5.69 -347.18 -1.97 -20.27 14 5 C -0.01 -0.25 6.72 38.93 0.26 0.01 14 6 C 0.09 3.67 11.20 85.16 0.95 4.63 14 7 N -0.59 -30.57 10.34 -193.42 -2.00 -32.58 14 8 C 0.34 19.06 7.35 134.95 0.99 20.05 14 9 C -0.46 -25.64 9.35 23.42 0.22 -25.42 14 10 H 0.08 4.36 7.85 -2.91 -0.02 4.33 14 11 C 0.03 1.47 5.50 85.30 0.47 1.94 14 12 N -0.76 -39.82 11.41 21.84 0.25 -39.57 14 13 Si 0.99 38.33 29.56 68.60 2.03 40.36 14 14 H -0.26 -9.85 7.11 99.48 0.71 -9.14 14 15 H -0.26 -9.59 7.11 99.48 0.71 -8.88 14 16 H -0.26 -9.99 7.11 99.48 0.71 -9.28 14 17 N -0.51 -26.77 7.84 -193.43 -1.52 -28.28 14 18 C 0.08 3.48 10.58 85.17 0.90 4.38 14 19 H 0.12 1.79 7.98 -2.39 -0.02 1.77 14 20 H 0.12 1.78 7.99 -2.39 -0.02 1.77 14 21 H 0.40 8.85 8.48 -92.71 -0.79 8.06 14 22 H 0.16 5.31 8.06 -2.91 -0.02 5.28 14 23 H 0.28 13.14 8.29 -92.71 -0.77 12.37 14 24 H 0.17 5.33 6.88 -2.91 -0.02 5.31 14 Total: -1.00 -67.54 231.88 3.26 -64.27 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: 0.46 Total: 11.58 kcal Atomic # 6 Polarization: 10.84 SS G_CDS: 5.65 Total: 16.49 kcal Atomic # 7 Polarization: -127.83 SS G_CDS: -4.87 Total: -132.71 kcal Atomic # 14 Polarization: 38.33 SS G_CDS: 2.03 Total: 40.36 kcal Total: -67.54 3.26 -64.27 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163183137.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.723 kcal (2) G-P(sol) polarization free energy of solvation -67.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.273 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds