Wall clock time and date at job start Sun Mar 29 2020 21:46:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52993 * 109.47292 * 2 1 4 4 H 1.09004 * 109.47463 * 307.47588 * 3 2 1 5 5 C 1.50710 * 109.47107 * 187.47873 * 3 2 1 6 6 H 1.08001 * 119.99763 * 246.80625 * 5 3 2 7 7 C 1.37867 * 120.00156 * 66.80691 * 5 3 2 8 8 N 1.31520 * 120.00096 * 19.08461 * 7 5 3 9 9 Si 1.86799 * 120.00165 * 199.08947 * 7 5 3 10 10 H 1.48498 * 109.47613 * 179.97438 * 9 7 5 11 11 H 1.48507 * 109.46984 * 299.99554 * 9 7 5 12 12 H 1.48505 * 109.47174 * 59.99367 * 9 7 5 13 13 N 1.46904 * 109.47392 * 67.47970 * 3 2 1 14 14 C 1.46900 * 111.00165 * 194.32026 * 13 3 2 15 15 C 1.53003 * 115.54652 * 39.12030 * 14 13 3 16 16 F 1.39899 * 109.46673 * 199.38916 * 15 14 13 17 17 C 1.52991 * 117.50120 * 253.40971 * 14 13 3 18 18 C 1.52998 * 117.49832 * 184.78330 * 14 13 3 19 19 H 1.08996 * 109.47367 * 304.31584 * 1 2 3 20 20 H 1.09003 * 109.46794 * 64.31588 * 1 2 3 21 21 H 1.09002 * 109.47606 * 184.31509 * 1 2 3 22 22 H 1.09010 * 109.47258 * 239.99793 * 2 1 3 23 23 H 1.09003 * 109.47418 * 120.00649 * 2 1 3 24 24 H 0.96994 * 120.00024 * 359.31613 * 8 7 5 25 25 H 1.00897 * 110.99830 * 70.36263 * 13 3 2 26 26 H 1.08996 * 109.47173 * 319.38147 * 15 14 13 27 27 H 1.09000 * 109.47088 * 79.39010 * 15 14 13 28 28 H 1.09002 * 117.49564 * 359.97438 * 17 14 13 29 29 H 1.08992 * 117.50161 * 145.01862 * 17 14 13 30 30 H 1.08993 * 117.50189 * 214.98110 * 18 14 13 31 31 H 1.09002 * 117.49913 * 0.02562 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5716 1.9935 -0.8156 5 6 3.5357 1.4464 -0.1849 6 1 4.1780 1.7785 0.6172 7 6 4.0839 1.0261 -1.3781 8 7 3.3419 0.9812 -2.4630 9 14 5.8805 0.5202 -1.4536 10 1 6.2219 0.1115 -2.8399 11 1 6.7347 1.6660 -1.0503 12 1 6.1130 -0.6196 -0.5306 13 7 1.7031 2.0810 1.2794 14 6 1.8645 3.5389 1.1988 15 6 1.4167 4.1806 -0.1160 16 9 2.0086 5.4417 -0.2446 17 6 3.0679 4.1570 1.9132 18 6 1.6606 4.3443 2.4835 19 1 -0.3634 0.5793 0.8487 20 1 -0.3633 0.4454 -0.9262 21 1 -0.3634 -1.0247 0.0773 22 1 1.8933 -0.5139 -0.8900 23 1 1.8933 -0.5139 0.8899 24 1 2.4065 1.2343 -2.4217 25 1 2.2552 1.6970 2.0316 26 1 1.7214 3.5494 -0.9507 27 1 0.3318 4.2865 -0.1176 28 1 3.7397 3.4819 2.4434 29 1 3.5411 5.0209 1.4466 30 1 1.2079 5.3315 2.3921 31 1 1.4070 3.7924 3.3886 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255150584.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:15 Heat of formation + Delta-G solvation = -53.750481 kcal Electronic energy + Delta-G solvation = -13683.950893 eV Core-core repulsion = 11300.354345 eV Total energy + Delta-G solvation = -2383.596548 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 201.122 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -48.71095 -39.48279 -36.71880 -33.77882 -31.73674 -28.65598 -27.54193 -24.77071 -23.31529 -21.88162 -20.57263 -19.07716 -17.83261 -16.77514 -16.70190 -15.73689 -15.66273 -15.40159 -15.04318 -14.63367 -14.08987 -13.75324 -13.26910 -12.81845 -12.67727 -12.52326 -12.39368 -12.32811 -12.01065 -11.71488 -11.63510 -11.47153 -11.06036 -10.70300 -10.27386 -9.03853 -8.48581 -6.25919 1.51097 1.55970 1.75211 2.55353 2.78114 3.16358 3.37366 3.60365 3.78513 3.94564 4.01355 4.41923 4.46905 4.54874 4.65313 4.73952 4.78066 4.88939 4.99867 5.03111 5.22761 5.23436 5.34029 5.49638 5.63636 5.95576 6.07871 6.46039 6.61288 6.70855 7.49335 8.77205 Molecular weight = 201.12amu Principal moments of inertia in cm(-1) A = 0.027190 B = 0.014022 C = 0.011462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.551995 B = 1996.418225 C = 2442.249399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.103 4.103 3 C 0.198 3.802 4 H 0.020 0.980 5 C -0.634 4.634 6 H 0.040 0.960 7 C -0.013 4.013 8 N -0.923 5.923 9 Si 1.095 2.905 10 H -0.287 1.287 11 H -0.280 1.280 12 H -0.273 1.273 13 N -0.630 5.630 14 C 0.022 3.978 15 C 0.098 3.902 16 F -0.223 7.223 17 C -0.208 4.208 18 C -0.143 4.143 19 H 0.065 0.935 20 H 0.035 0.965 21 H 0.052 0.948 22 H 0.030 0.970 23 H 0.045 0.955 24 H 0.260 0.740 25 H 0.336 0.664 26 H 0.066 0.934 27 H 0.098 0.902 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.107 0.893 31 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.851 3.179 7.268 8.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.141 4.141 3 C 0.089 3.911 4 H 0.038 0.962 5 C -0.673 4.673 6 H 0.058 0.942 7 C -0.215 4.215 8 N -0.559 5.559 9 Si 0.920 3.080 10 H -0.213 1.213 11 H -0.206 1.206 12 H -0.198 1.198 13 N -0.258 5.258 14 C -0.071 4.071 15 C 0.043 3.957 16 F -0.204 7.204 17 C -0.248 4.248 18 C -0.181 4.181 19 H 0.084 0.916 20 H 0.055 0.945 21 H 0.071 0.929 22 H 0.049 0.951 23 H 0.064 0.936 24 H 0.070 0.930 25 H 0.154 0.846 26 H 0.084 0.916 27 H 0.116 0.884 28 H 0.105 0.895 29 H 0.103 0.897 30 H 0.125 0.875 31 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -3.365 2.656 6.102 7.457 hybrid contribution 0.101 0.606 0.724 0.950 sum -3.263 3.262 6.825 8.239 Atomic orbital electron populations 1.21639 0.95339 1.00817 1.01180 1.21443 0.95481 0.97915 0.99302 1.19293 0.92748 0.91315 0.87715 0.96219 1.22764 0.93849 1.48521 1.02146 0.94154 1.26760 1.08924 0.93866 0.91901 1.70943 1.09111 1.46647 1.29173 0.83203 0.71701 0.77104 0.76032 1.21301 1.20633 1.19806 1.60636 1.58323 0.99850 1.06995 1.21955 1.02340 0.89614 0.93189 1.21475 0.98048 0.78988 0.97194 1.92677 1.86806 1.43909 1.97044 1.23413 0.92208 1.03811 1.05365 1.23202 0.97644 1.00934 0.96315 0.91590 0.94545 0.92866 0.95139 0.93649 0.92981 0.84611 0.91596 0.88351 0.89458 0.89660 0.87460 0.87215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.76 9.86 71.98 0.71 -4.05 16 2 C -0.10 -4.49 5.50 30.59 0.17 -4.32 16 3 C 0.20 9.15 1.23 44.17 0.05 9.21 16 4 H 0.02 1.01 4.39 -2.38 -0.01 1.00 16 5 C -0.63 -33.37 8.12 25.60 0.21 -33.16 16 6 H 0.04 2.16 7.89 -2.91 -0.02 2.14 16 7 C -0.01 -0.72 4.95 84.65 0.42 -0.30 16 8 N -0.92 -53.81 13.15 21.44 0.28 -53.53 16 9 Si 1.10 49.64 29.95 68.60 2.05 51.69 16 10 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 11 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 12 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 13 N -0.63 -24.70 5.98 -452.09 -2.70 -27.40 16 14 C 0.02 0.82 2.43 3.52 0.01 0.83 16 15 C 0.10 3.70 7.28 71.98 0.52 4.23 16 16 F -0.22 -8.61 15.96 44.97 0.72 -7.90 16 17 C -0.21 -7.31 9.64 30.59 0.29 -7.02 16 18 C -0.14 -4.19 10.08 30.59 0.31 -3.88 16 19 H 0.07 2.25 7.72 -2.39 -0.02 2.23 16 20 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 21 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 22 H 0.03 1.49 7.23 -2.38 -0.02 1.47 16 23 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 24 H 0.26 15.21 6.93 -92.71 -0.64 14.56 16 25 H 0.34 13.01 8.47 -89.70 -0.76 12.25 16 26 H 0.07 2.95 5.58 -2.39 -0.01 2.94 16 27 H 0.10 3.15 8.14 -2.39 -0.02 3.13 16 28 H 0.09 3.08 8.12 -2.39 -0.02 3.06 16 29 H 0.08 3.10 7.31 -2.39 -0.02 3.09 16 30 H 0.11 2.81 8.14 -2.39 -0.02 2.79 16 31 H 0.11 2.84 8.14 -2.39 -0.02 2.82 16 Total: -1.00 -57.62 257.92 3.53 -54.09 By element: Atomic # 1 Polarization: 21.01 SS G_CDS: 0.48 Total: 21.50 kcal Atomic # 6 Polarization: -41.15 SS G_CDS: 2.69 Total: -38.46 kcal Atomic # 7 Polarization: -78.51 SS G_CDS: -2.42 Total: -80.93 kcal Atomic # 9 Polarization: -8.61 SS G_CDS: 0.72 Total: -7.90 kcal Atomic # 14 Polarization: 49.64 SS G_CDS: 2.05 Total: 51.69 kcal Total: -57.62 3.53 -54.09 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255150584.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.343 kcal (2) G-P(sol) polarization free energy of solvation -57.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds