Wall clock time and date at job start Sun Mar 29 2020 21:49:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 119.99904 * 2 1 4 4 H 1.48505 * 109.47266 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47453 * 300.00490 * 3 2 1 6 6 H 1.48506 * 109.46919 * 60.00618 * 3 2 1 7 7 C 1.37877 * 120.00251 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00494 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99762 * 359.97438 * 7 2 1 10 10 S 1.81398 * 109.47356 * 180.02562 * 9 7 2 11 11 C 1.81395 * 103.00322 * 180.02562 * 10 9 7 12 12 H 1.09002 * 110.32844 * 54.29972 * 11 10 9 13 13 C 1.54494 * 110.46238 * 176.60203 * 11 10 9 14 14 C 1.54570 * 102.14538 * 134.22617 * 13 11 10 15 15 O 1.45836 * 104.44405 * 333.15578 * 14 13 11 16 16 C 1.34061 * 109.90925 * 30.59890 * 15 14 13 17 17 O 1.20823 * 125.09431 * 159.16708 * 16 15 14 18 18 H 0.97000 * 119.99796 * 0.02562 * 1 2 3 19 19 H 1.09005 * 109.47164 * 60.00487 * 9 7 2 20 20 H 1.08995 * 109.47408 * 300.00534 * 9 7 2 21 21 H 1.08993 * 110.86750 * 252.39253 * 13 11 10 22 22 H 1.09001 * 110.86635 * 16.06854 * 13 11 10 23 23 H 1.08995 * 110.44506 * 214.40919 * 14 13 11 24 24 H 1.09004 * 110.54360 * 91.94161 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 16 2.4298 -3.8780 -0.0005 11 6 1.3516 -5.3367 -0.0013 12 1 0.6472 -5.2864 -0.8316 13 6 2.1926 -6.6298 -0.0872 14 6 1.5381 -7.5160 0.9970 15 8 0.9714 -6.5674 1.9488 16 6 0.6097 -5.4439 1.3132 17 8 -0.1892 -4.6377 1.7277 18 1 -0.4850 0.8401 -0.0004 19 1 0.6241 -2.5567 -0.8904 20 1 0.6247 -2.5571 0.8896 21 1 2.0999 -7.0885 -1.0716 22 1 3.2370 -6.4304 0.1528 23 1 2.2882 -8.1402 1.4824 24 1 0.7526 -8.1345 0.5627 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001307353784.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:10 Heat of formation + Delta-G solvation = -90.308502 kcal Electronic energy + Delta-G solvation = -10881.917388 eV Core-core repulsion = 8693.563890 eV Total energy + Delta-G solvation = -2188.353498 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 202.045 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.60436 -37.16926 -33.12272 -32.85495 -28.56670 -27.88365 -23.30608 -22.25734 -21.10967 -17.22645 -17.06585 -16.45471 -16.10333 -14.96623 -14.61776 -13.90914 -13.63501 -13.44744 -12.53988 -12.28021 -12.08356 -11.82419 -11.49714 -10.89221 -10.67418 -10.50485 -10.23633 -9.99433 -9.52784 -8.99286 -8.59919 -6.88877 -6.15742 -4.21524 1.92949 2.67183 3.26831 3.33593 3.37795 3.43014 3.68568 4.10794 4.31777 4.37210 4.74284 4.84632 5.20779 5.28509 5.33222 5.61822 5.82549 6.86046 7.11017 7.27106 7.75686 7.77003 8.02559 8.79913 9.41135 10.95220 Molecular weight = 202.05amu Principal moments of inertia in cm(-1) A = 0.070128 B = 0.008658 C = 0.008057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 399.176621 B = 3233.087587 C = 3474.484655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.066 3.934 3 Si 0.907 3.093 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.517 4.517 8 H 0.067 0.933 9 C 0.082 3.918 10 S -0.248 6.248 11 C -0.141 4.141 12 H 0.121 0.879 13 C -0.130 4.130 14 C 0.056 3.944 15 O -0.346 6.346 16 C 0.487 3.513 17 O -0.435 6.435 18 H 0.265 0.735 19 H 0.037 0.963 20 H 0.054 0.946 21 H 0.100 0.900 22 H 0.098 0.902 23 H 0.110 0.890 24 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.392 -13.636 -1.251 14.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.138 4.138 3 Si 0.734 3.266 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.556 4.556 8 H 0.085 0.915 9 C -0.065 4.065 10 S -0.020 6.020 11 C -0.271 4.271 12 H 0.139 0.861 13 C -0.168 4.168 14 C -0.019 4.019 15 O -0.264 6.264 16 C 0.323 3.677 17 O -0.316 6.316 18 H 0.075 0.925 19 H 0.055 0.945 20 H 0.073 0.927 21 H 0.119 0.881 22 H 0.116 0.884 23 H 0.128 0.872 24 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.940 -13.141 -0.850 13.745 hybrid contribution -0.906 0.880 -0.217 1.282 sum 3.033 -12.261 -1.066 12.675 Atomic orbital electron populations 1.69988 1.06119 1.27226 1.49156 1.24971 0.94981 0.99246 0.94618 0.86287 0.79992 0.82539 0.77762 1.19450 1.20703 1.20670 1.20662 0.93357 0.88690 1.52912 0.91504 1.21305 0.93634 0.90185 1.01367 1.86749 1.18161 0.99814 1.97242 1.24396 1.01915 1.00777 0.99967 0.86124 1.22829 1.00873 0.92501 1.00620 1.24102 0.98149 0.90664 0.88990 1.87017 1.74460 1.27403 1.37484 1.23050 0.79034 0.80155 0.85474 1.90782 1.29948 1.40797 1.70090 0.92496 0.94472 0.92729 0.88107 0.88362 0.87169 0.89774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.75 13.29 55.43 0.74 -26.01 14 2 C 0.07 1.91 5.46 -17.82 -0.10 1.81 14 3 Si 0.91 21.80 29.54 -169.99 -5.02 16.78 14 4 H -0.27 -6.36 7.11 56.52 0.40 -5.96 14 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 14 6 H -0.28 -6.67 7.11 56.52 0.40 -6.26 14 7 C -0.52 -14.98 9.13 -34.44 -0.31 -15.30 14 8 H 0.07 1.91 7.71 -52.49 -0.40 1.51 14 9 C 0.08 2.22 5.47 36.01 0.20 2.42 14 10 S -0.25 -5.38 20.93 -107.50 -2.25 -7.63 14 11 C -0.14 -2.35 3.49 -26.79 -0.09 -2.45 14 12 H 0.12 1.90 8.14 -51.93 -0.42 1.48 14 13 C -0.13 -1.44 6.82 -25.12 -0.17 -1.61 14 14 C 0.06 0.55 7.90 37.98 0.30 0.85 14 15 O -0.35 -5.50 11.05 -38.47 -0.43 -5.92 14 16 C 0.49 9.30 7.84 36.31 0.28 9.59 14 17 O -0.43 -10.27 16.51 -18.41 -0.30 -10.57 14 18 H 0.27 7.46 8.31 -40.82 -0.34 7.12 14 19 H 0.04 1.04 8.14 -51.92 -0.42 0.62 14 20 H 0.05 1.62 6.79 -51.93 -0.35 1.27 14 21 H 0.10 0.82 8.14 -51.93 -0.42 0.39 14 22 H 0.10 1.11 7.76 -51.93 -0.40 0.70 14 23 H 0.11 0.77 8.14 -51.93 -0.42 0.34 14 24 H 0.08 0.62 8.14 -51.93 -0.42 0.19 14 LS Contribution 230.03 15.07 3.47 3.47 Total: -1.00 -33.27 230.03 -6.10 -39.37 By element: Atomic # 1 Polarization: -2.38 SS G_CDS: -2.41 Total: -4.79 kcal Atomic # 6 Polarization: -4.78 SS G_CDS: 0.11 Total: -4.68 kcal Atomic # 7 Polarization: -26.75 SS G_CDS: 0.74 Total: -26.01 kcal Atomic # 8 Polarization: -15.77 SS G_CDS: -0.73 Total: -16.50 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Atomic # 16 Polarization: -5.38 SS G_CDS: -2.25 Total: -7.63 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -33.27 -6.10 -39.37 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307353784.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.941 kcal (2) G-P(sol) polarization free energy of solvation -33.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds