Wall clock time and date at job start Sun Mar 29 2020 21:49:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 119.99904 * 2 1 4 4 H 1.48505 * 109.47266 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47453 * 300.00490 * 3 2 1 6 6 H 1.48506 * 109.46919 * 60.00618 * 3 2 1 7 7 C 1.37877 * 120.00251 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00494 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99762 * 359.97438 * 7 2 1 10 10 S 1.81398 * 109.47356 * 180.02562 * 9 7 2 11 11 C 1.81395 * 103.00322 * 180.02562 * 10 9 7 12 12 H 1.09002 * 110.32844 * 54.29972 * 11 10 9 13 13 C 1.54494 * 110.46238 * 176.60203 * 11 10 9 14 14 C 1.54570 * 102.14538 * 134.22617 * 13 11 10 15 15 O 1.45836 * 104.44405 * 333.15578 * 14 13 11 16 16 C 1.34061 * 109.90925 * 30.59890 * 15 14 13 17 17 O 1.20823 * 125.09431 * 159.16708 * 16 15 14 18 18 H 0.97000 * 119.99796 * 0.02562 * 1 2 3 19 19 H 1.09005 * 109.47164 * 60.00487 * 9 7 2 20 20 H 1.08995 * 109.47408 * 300.00534 * 9 7 2 21 21 H 1.08993 * 110.86750 * 252.39253 * 13 11 10 22 22 H 1.09001 * 110.86635 * 16.06854 * 13 11 10 23 23 H 1.08995 * 110.44506 * 214.40919 * 14 13 11 24 24 H 1.09004 * 110.54360 * 91.94161 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 16 2.4298 -3.8780 -0.0005 11 6 1.3516 -5.3367 -0.0013 12 1 0.6472 -5.2864 -0.8316 13 6 2.1926 -6.6298 -0.0872 14 6 1.5381 -7.5160 0.9970 15 8 0.9714 -6.5674 1.9488 16 6 0.6097 -5.4439 1.3132 17 8 -0.1892 -4.6377 1.7277 18 1 -0.4850 0.8401 -0.0004 19 1 0.6241 -2.5567 -0.8904 20 1 0.6247 -2.5571 0.8896 21 1 2.0999 -7.0885 -1.0716 22 1 3.2370 -6.4304 0.1528 23 1 2.2882 -8.1402 1.4824 24 1 0.7526 -8.1345 0.5627 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001307353784.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:10 Heat of formation + Delta-G solvation = -112.853593 kcal Electronic energy + Delta-G solvation = -10882.895017 eV Core-core repulsion = 8693.563890 eV Total energy + Delta-G solvation = -2189.331126 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 202.045 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.91068 -38.67148 -35.32623 -34.00780 -30.74372 -29.05145 -25.35114 -23.41865 -22.50022 -18.85236 -18.37804 -18.19302 -17.71184 -16.78873 -16.16524 -15.27540 -15.00706 -14.90013 -14.54745 -14.17287 -13.58628 -13.32896 -12.78342 -12.63063 -12.46947 -12.00985 -11.76910 -11.60649 -11.36230 -10.88037 -10.79050 -8.67807 -8.35571 -6.51485 0.38433 1.16713 1.37603 1.39129 1.53495 1.77632 2.23109 2.34191 2.81261 2.98503 3.27244 3.84633 3.92980 4.27076 4.65135 4.82445 4.86970 4.94159 5.01090 5.51933 5.65217 5.82485 6.30783 6.57667 7.17181 8.76948 Molecular weight = 202.05amu Principal moments of inertia in cm(-1) A = 0.070128 B = 0.008658 C = 0.008057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 399.176621 B = 3233.087587 C = 3474.484655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.010 3.990 3 Si 0.983 3.017 4 H -0.261 1.261 5 H -0.269 1.269 6 H -0.275 1.275 7 C -0.541 4.541 8 H 0.067 0.933 9 C 0.079 3.921 10 S -0.239 6.239 11 C -0.137 4.137 12 H 0.131 0.869 13 C -0.117 4.117 14 C 0.052 3.948 15 O -0.357 6.357 16 C 0.486 3.514 17 O -0.497 6.497 18 H 0.270 0.730 19 H 0.014 0.986 20 H 0.016 0.984 21 H 0.143 0.857 22 H 0.100 0.900 23 H 0.148 0.852 24 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.023 -15.199 -1.894 16.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.191 4.191 3 Si 0.806 3.194 4 H -0.184 1.184 5 H -0.194 1.194 6 H -0.200 1.200 7 C -0.580 4.580 8 H 0.085 0.915 9 C -0.068 4.068 10 S -0.010 6.010 11 C -0.267 4.267 12 H 0.149 0.851 13 C -0.155 4.155 14 C -0.021 4.021 15 O -0.274 6.274 16 C 0.325 3.675 17 O -0.383 6.383 18 H 0.079 0.921 19 H 0.032 0.968 20 H 0.035 0.965 21 H 0.161 0.839 22 H 0.118 0.882 23 H 0.166 0.834 24 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 5.604 -14.747 -1.504 15.847 hybrid contribution -1.407 1.149 -0.010 1.817 sum 4.197 -13.598 -1.514 14.311 Atomic orbital electron populations 1.70118 1.07990 1.28575 1.49757 1.26049 0.95914 1.03485 0.93628 0.85131 0.78781 0.77256 0.78248 1.18444 1.19406 1.20005 1.21032 0.93501 0.90079 1.53373 0.91502 1.20914 0.94374 0.93161 0.98363 1.86346 1.17522 0.99913 1.97215 1.24640 1.02243 1.00639 0.99181 0.85137 1.22982 0.99787 0.89154 1.03537 1.24700 1.00018 0.89484 0.87922 1.86993 1.74134 1.27083 1.39208 1.23420 0.78094 0.80218 0.85812 1.90749 1.32781 1.43111 1.71668 0.92065 0.96807 0.96535 0.83885 0.88153 0.83396 0.86387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.58 13.29 21.45 0.28 -57.29 14 2 C 0.01 0.59 5.46 84.65 0.46 1.05 14 3 Si 0.98 45.05 29.54 68.60 2.03 47.08 14 4 H -0.26 -11.43 7.11 99.48 0.71 -10.73 14 5 H -0.27 -11.73 7.11 99.48 0.71 -11.02 14 6 H -0.27 -12.23 7.11 99.48 0.71 -11.53 14 7 C -0.54 -32.27 9.13 25.60 0.23 -32.04 14 8 H 0.07 3.88 7.71 -2.92 -0.02 3.86 14 9 C 0.08 4.52 5.47 71.24 0.39 4.91 14 10 S -0.24 -10.38 20.93 -56.49 -1.18 -11.56 14 11 C -0.14 -4.39 3.49 30.56 0.11 -4.28 14 12 H 0.13 3.96 8.14 -2.39 -0.02 3.94 14 13 C -0.12 -2.07 6.82 31.64 0.22 -1.86 14 14 C 0.05 0.78 7.90 72.52 0.57 1.35 14 15 O -0.36 -10.65 11.05 -50.13 -0.55 -11.21 14 16 C 0.49 18.57 7.84 71.44 0.56 19.13 14 17 O -0.50 -24.64 16.51 21.65 0.36 -24.29 14 18 H 0.27 15.56 8.31 -92.71 -0.77 14.79 14 19 H 0.01 0.81 8.14 -2.39 -0.02 0.80 14 20 H 0.02 1.04 6.79 -2.39 -0.02 1.03 14 21 H 0.14 1.45 8.14 -2.39 -0.02 1.43 14 22 H 0.10 1.82 7.76 -2.39 -0.02 1.81 14 23 H 0.15 1.19 8.14 -2.39 -0.02 1.17 14 24 H 0.12 1.06 8.14 -2.39 -0.02 1.04 14 Total: -1.00 -77.10 230.03 4.67 -72.43 By element: Atomic # 1 Polarization: -4.61 SS G_CDS: 1.20 Total: -3.41 kcal Atomic # 6 Polarization: -14.28 SS G_CDS: 2.54 Total: -11.74 kcal Atomic # 7 Polarization: -57.58 SS G_CDS: 0.28 Total: -57.29 kcal Atomic # 8 Polarization: -35.30 SS G_CDS: -0.20 Total: -35.50 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Atomic # 16 Polarization: -10.38 SS G_CDS: -1.18 Total: -11.56 kcal Total: -77.10 4.67 -72.43 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307353784.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.422 kcal (2) G-P(sol) polarization free energy of solvation -77.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds