Wall clock time and date at job start Sun Mar 29 2020 21:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47184 * 179.97438 * 9 7 2 11 11 N 1.46496 * 109.46995 * 179.97438 * 10 9 7 12 12 C 1.34776 * 119.99846 * 180.02562 * 11 10 9 13 13 O 1.21282 * 119.99940 * 359.97438 * 12 11 10 14 14 C 1.50698 * 120.00035 * 180.02562 * 12 11 10 15 15 H 1.09001 * 115.55315 * 34.41107 * 14 12 11 16 16 C 1.53002 * 117.49678 * 248.74169 * 14 12 11 17 17 C 1.53003 * 117.50034 * 180.08382 * 14 12 11 18 18 H 1.09004 * 117.49855 * 359.97438 * 17 14 12 19 19 F 1.39898 * 117.50233 * 214.99926 * 17 14 12 20 20 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.46665 * 299.99501 * 9 7 2 22 22 H 1.08993 * 109.47304 * 59.99945 * 9 7 2 23 23 H 1.09001 * 109.47002 * 299.99404 * 10 9 7 24 24 H 1.09001 * 109.46801 * 59.99558 * 10 9 7 25 25 H 0.96998 * 120.00192 * 0.02562 * 11 10 9 26 26 H 1.09003 * 117.49882 * 0.02562 * 16 14 12 27 27 H 1.09002 * 117.49659 * 145.01684 * 16 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 7 1.5129 -4.9308 0.0012 12 6 2.1869 -6.0979 0.0018 13 8 3.3997 -6.0979 0.0014 14 6 1.4334 -7.4030 0.0018 15 1 0.4960 -7.4048 -0.5543 16 6 1.5059 -8.2605 1.2670 17 6 2.2556 -8.6934 0.0046 18 1 3.3414 -8.5984 0.0059 19 9 1.7466 -9.7852 -0.7069 20 1 -0.4850 -0.8401 -0.0004 21 1 0.6242 -2.5567 0.8904 22 1 0.6248 -2.5571 -0.8896 23 1 2.8720 -3.6043 -0.8895 24 1 2.8721 -3.6042 0.8905 25 1 0.5430 -4.9308 0.0011 26 1 2.0981 -7.8804 2.0994 27 1 0.6161 -8.8265 1.5429 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001354874493.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:23 Heat of formation + Delta-G solvation = -81.108334 kcal Electronic energy + Delta-G solvation = -12260.750750 eV Core-core repulsion = 9740.134782 eV Total energy + Delta-G solvation = -2520.615968 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 201.091 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -47.82588 -39.65105 -36.00805 -34.96247 -33.13179 -29.58912 -25.31079 -23.41843 -22.57585 -21.31194 -20.07703 -17.89295 -16.72060 -16.30447 -15.58985 -15.16485 -14.97356 -14.57977 -13.78018 -13.60666 -13.41091 -12.57846 -12.48120 -12.26446 -11.70612 -11.03490 -10.72297 -10.49379 -10.37734 -10.22332 -10.03733 -9.72656 -8.73028 -8.67867 -8.41669 -6.47950 -4.18388 2.52049 3.24859 3.41179 3.42297 3.47696 3.61097 4.02892 4.40055 4.47624 4.61356 4.83568 5.03972 5.30297 5.36026 5.60193 5.86375 6.10693 6.14659 6.52778 6.69012 7.17663 7.28602 7.80161 8.03145 8.33555 8.43403 8.75536 9.53694 10.93151 Molecular weight = 201.09amu Principal moments of inertia in cm(-1) A = 0.098583 B = 0.005500 C = 0.005347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 283.956197 B = 5090.121590 C = 5235.513821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.018 3.982 3 Si 1.071 2.929 4 H -0.282 1.282 5 H -0.286 1.286 6 H -0.286 1.286 7 C -0.604 4.604 8 H 0.053 0.947 9 C -0.001 4.001 10 C 0.128 3.872 11 N -0.716 5.716 12 C 0.537 3.463 13 O -0.549 6.549 14 C -0.203 4.203 15 H 0.133 0.867 16 C -0.161 4.161 17 C 0.048 3.952 18 H 0.147 0.853 19 F -0.182 7.182 20 H 0.268 0.732 21 H 0.014 0.986 22 H 0.014 0.986 23 H 0.060 0.940 24 H 0.059 0.941 25 H 0.399 0.601 26 H 0.116 0.884 27 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.746 -13.932 1.428 14.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.187 4.187 3 Si 0.899 3.101 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.213 1.213 7 C -0.643 4.643 8 H 0.072 0.928 9 C -0.038 4.038 10 C 0.006 3.994 11 N -0.365 5.365 12 C 0.322 3.678 13 O -0.427 6.427 14 C -0.225 4.225 15 H 0.151 0.849 16 C -0.199 4.199 17 C 0.011 3.989 18 H 0.164 0.836 19 F -0.162 7.162 20 H 0.078 0.922 21 H 0.032 0.968 22 H 0.032 0.968 23 H 0.078 0.922 24 H 0.078 0.922 25 H 0.233 0.767 26 H 0.135 0.865 27 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 1.412 -12.271 1.402 12.432 hybrid contribution -0.492 -1.731 -0.126 1.804 sum 0.920 -14.003 1.276 14.091 Atomic orbital electron populations 1.70807 1.06890 1.30559 1.46247 1.25898 0.96484 1.02853 0.93425 0.83503 0.74872 0.75018 0.76706 1.20693 1.21283 1.21283 1.21881 0.94557 0.91355 1.56467 0.92834 1.19460 0.94855 0.92873 0.96644 1.21621 0.95768 0.80851 1.01181 1.46259 1.10627 1.06353 1.73246 1.19361 0.87426 0.84339 0.76650 1.90686 1.13725 1.87599 1.50731 1.22999 1.03043 0.91586 1.04889 0.84937 1.23676 1.03569 1.00754 0.91902 1.22103 0.97676 0.82973 0.96121 0.83554 1.92808 1.89110 1.54871 1.79444 0.92159 0.96772 0.96781 0.92194 0.92223 0.76737 0.86542 0.86709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.16 13.65 55.43 0.76 -26.40 15 2 C 0.02 0.50 5.46 -17.82 -0.10 0.40 15 3 Si 1.07 24.88 29.90 -169.99 -5.08 19.79 15 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 15 5 H -0.29 -6.36 7.11 56.52 0.40 -5.96 15 6 H -0.29 -6.35 7.11 56.52 0.40 -5.95 15 7 C -0.60 -16.89 9.11 -34.44 -0.31 -17.20 15 8 H 0.05 1.48 7.74 -52.48 -0.41 1.07 15 9 C 0.00 -0.02 4.40 -27.88 -0.12 -0.15 15 10 C 0.13 2.70 5.61 -4.04 -0.02 2.68 15 11 N -0.72 -12.17 5.56 -60.29 -0.33 -12.50 15 12 C 0.54 8.80 7.61 -10.99 -0.08 8.72 15 13 O -0.55 -10.91 16.26 5.56 0.09 -10.82 15 14 C -0.20 -2.45 6.17 -91.77 -0.57 -3.02 15 15 H 0.13 1.35 8.14 -51.93 -0.42 0.93 15 16 C -0.16 -1.58 10.22 -26.69 -0.27 -1.86 15 17 C 0.05 0.55 7.41 -26.69 -0.20 0.35 15 18 H 0.15 1.70 7.67 -51.93 -0.40 1.30 15 19 F -0.18 -2.26 17.60 2.25 0.04 -2.22 15 20 H 0.27 7.88 7.22 -40.82 -0.29 7.58 15 21 H 0.01 0.35 8.01 -51.93 -0.42 -0.06 15 22 H 0.01 0.35 8.01 -51.93 -0.42 -0.07 15 23 H 0.06 1.33 8.14 -51.93 -0.42 0.90 15 24 H 0.06 1.31 8.14 -51.93 -0.42 0.89 15 25 H 0.40 5.77 8.47 -40.82 -0.35 5.42 15 26 H 0.12 1.12 8.14 -51.93 -0.42 0.70 15 27 H 0.11 0.90 8.14 -51.93 -0.42 0.48 15 LS Contribution 248.12 15.07 3.74 3.74 Total: -1.00 -31.71 248.12 -5.66 -37.36 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: -3.19 Total: 1.11 kcal Atomic # 6 Polarization: -8.39 SS G_CDS: -1.68 Total: -10.07 kcal Atomic # 7 Polarization: -39.33 SS G_CDS: 0.42 Total: -38.90 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: 0.09 Total: -10.82 kcal Atomic # 9 Polarization: -2.26 SS G_CDS: 0.04 Total: -2.22 kcal Atomic # 14 Polarization: 24.88 SS G_CDS: -5.08 Total: 19.79 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -31.71 -5.66 -37.36 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354874493.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.744 kcal (2) G-P(sol) polarization free energy of solvation -31.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds