Wall clock time and date at job start Sun Mar 29 2020 21:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47184 * 179.97438 * 9 7 2 11 11 N 1.46496 * 109.46995 * 179.97438 * 10 9 7 12 12 C 1.34776 * 119.99846 * 180.02562 * 11 10 9 13 13 O 1.21282 * 119.99940 * 359.97438 * 12 11 10 14 14 C 1.50698 * 120.00035 * 180.02562 * 12 11 10 15 15 H 1.09001 * 115.55315 * 34.41107 * 14 12 11 16 16 C 1.53002 * 117.49678 * 248.74169 * 14 12 11 17 17 C 1.53003 * 117.50034 * 180.08382 * 14 12 11 18 18 H 1.09004 * 117.49855 * 359.97438 * 17 14 12 19 19 F 1.39898 * 117.50233 * 214.99926 * 17 14 12 20 20 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.46665 * 299.99501 * 9 7 2 22 22 H 1.08993 * 109.47304 * 59.99945 * 9 7 2 23 23 H 1.09001 * 109.47002 * 299.99404 * 10 9 7 24 24 H 1.09001 * 109.46801 * 59.99558 * 10 9 7 25 25 H 0.96998 * 120.00192 * 0.02562 * 11 10 9 26 26 H 1.09003 * 117.49882 * 0.02562 * 16 14 12 27 27 H 1.09002 * 117.49659 * 145.01684 * 16 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 7 1.5129 -4.9308 0.0012 12 6 2.1869 -6.0979 0.0018 13 8 3.3997 -6.0979 0.0014 14 6 1.4334 -7.4030 0.0018 15 1 0.4960 -7.4048 -0.5543 16 6 1.5059 -8.2605 1.2670 17 6 2.2556 -8.6934 0.0046 18 1 3.3414 -8.5984 0.0059 19 9 1.7466 -9.7852 -0.7069 20 1 -0.4850 -0.8401 -0.0004 21 1 0.6242 -2.5567 0.8904 22 1 0.6248 -2.5571 -0.8896 23 1 2.8720 -3.6043 -0.8895 24 1 2.8721 -3.6042 0.8905 25 1 0.5430 -4.9308 0.0011 26 1 2.0981 -7.8804 2.0994 27 1 0.6161 -8.8265 1.5429 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001354874493.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:23 Heat of formation + Delta-G solvation = -102.566482 kcal Electronic energy + Delta-G solvation = -12261.681245 eV Core-core repulsion = 9740.134782 eV Total energy + Delta-G solvation = -2521.546463 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 201.091 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.75293 -40.98656 -37.26752 -36.45857 -35.06878 -31.44155 -27.00003 -25.01876 -23.46637 -23.07031 -21.37450 -19.22896 -18.58440 -17.45755 -16.87225 -16.56468 -16.24233 -15.69759 -15.63196 -15.08985 -14.90610 -14.19278 -13.72176 -13.55940 -13.37522 -12.88882 -12.31580 -12.12904 -11.88823 -11.65553 -11.31662 -11.15472 -10.73040 -10.59729 -10.18087 -8.73519 -6.45021 1.30680 1.54113 1.61406 1.81314 1.99272 2.51648 2.56073 3.03890 3.11930 3.49388 3.55897 3.95039 4.03892 4.27810 4.30549 4.62216 4.64472 4.78279 5.02564 5.05867 5.30170 5.34272 5.91074 6.12049 6.42695 6.55166 7.10190 7.35165 8.68942 Molecular weight = 201.09amu Principal moments of inertia in cm(-1) A = 0.098583 B = 0.005500 C = 0.005347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 283.956197 B = 5090.121590 C = 5235.513821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.032 4.032 3 Si 1.117 2.883 4 H -0.282 1.282 5 H -0.270 1.270 6 H -0.269 1.269 7 C -0.625 4.625 8 H 0.051 0.949 9 C 0.006 3.994 10 C 0.146 3.854 11 N -0.712 5.712 12 C 0.537 3.463 13 O -0.587 6.587 14 C -0.209 4.209 15 H 0.156 0.844 16 C -0.135 4.135 17 C 0.041 3.959 18 H 0.141 0.859 19 F -0.186 7.186 20 H 0.259 0.741 21 H 0.008 0.992 22 H 0.006 0.994 23 H 0.047 0.953 24 H 0.049 0.951 25 H 0.413 0.587 26 H 0.119 0.881 27 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.645 -14.586 1.811 14.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.230 4.230 3 Si 0.938 3.062 4 H -0.207 1.207 5 H -0.196 1.196 6 H -0.194 1.194 7 C -0.664 4.664 8 H 0.069 0.931 9 C -0.032 4.032 10 C 0.022 3.978 11 N -0.362 5.362 12 C 0.325 3.675 13 O -0.468 6.468 14 C -0.230 4.230 15 H 0.173 0.827 16 C -0.172 4.172 17 C 0.005 3.995 18 H 0.159 0.841 19 F -0.167 7.167 20 H 0.069 0.931 21 H 0.026 0.974 22 H 0.024 0.976 23 H 0.065 0.935 24 H 0.068 0.932 25 H 0.249 0.751 26 H 0.138 0.862 27 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 1.288 -12.967 1.787 13.153 hybrid contribution -0.456 -1.595 -0.249 1.677 sum 0.831 -14.562 1.538 14.666 Atomic orbital electron populations 1.70924 1.07789 1.30135 1.48110 1.27365 0.96595 1.06620 0.92427 0.82930 0.74155 0.71104 0.78038 1.20692 1.19557 1.19443 1.22328 0.94855 0.93076 1.56095 0.93099 1.19310 0.94969 0.93138 0.95755 1.21105 0.94785 0.81817 1.00065 1.46058 1.11238 1.05344 1.73524 1.20042 0.87141 0.85294 0.75049 1.90670 1.15644 1.88232 1.52250 1.22940 1.03436 0.89093 1.07533 0.82660 1.23836 1.04021 0.98623 0.90739 1.22118 0.97571 0.82431 0.97404 0.84119 1.92802 1.89119 1.54967 1.79769 0.93133 0.97408 0.97587 0.93489 0.93238 0.75104 0.86239 0.83855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.92 13.65 21.45 0.29 -55.63 15 2 C -0.03 -1.79 5.46 84.65 0.46 -1.33 15 3 Si 1.12 49.31 29.90 68.60 2.05 51.37 15 4 H -0.28 -12.36 7.11 99.48 0.71 -11.66 15 5 H -0.27 -11.16 7.11 99.48 0.71 -10.45 15 6 H -0.27 -11.07 7.11 99.48 0.71 -10.36 15 7 C -0.63 -35.07 9.11 25.60 0.23 -34.84 15 8 H 0.05 2.82 7.74 -2.91 -0.02 2.79 15 9 C 0.01 0.28 4.40 29.85 0.13 0.41 15 10 C 0.15 6.18 5.61 86.38 0.48 6.67 15 11 N -0.71 -23.59 5.56 -463.06 -2.57 -26.16 15 12 C 0.54 17.01 7.61 87.66 0.67 17.68 15 13 O -0.59 -23.15 16.26 -3.04 -0.05 -23.20 15 14 C -0.21 -4.53 6.17 -11.54 -0.07 -4.60 15 15 H 0.16 2.68 8.14 -2.39 -0.02 2.66 15 16 C -0.13 -2.22 10.22 30.62 0.31 -1.90 15 17 C 0.04 0.86 7.41 30.62 0.23 1.09 15 18 H 0.14 3.12 7.67 -2.38 -0.02 3.10 15 19 F -0.19 -4.22 17.60 44.97 0.79 -3.43 15 20 H 0.26 15.44 7.22 -92.71 -0.67 14.77 15 21 H 0.01 0.39 8.01 -2.39 -0.02 0.37 15 22 H 0.01 0.30 8.01 -2.39 -0.02 0.28 15 23 H 0.05 2.10 8.14 -2.39 -0.02 2.08 15 24 H 0.05 2.19 8.14 -2.39 -0.02 2.17 15 25 H 0.41 11.40 8.47 -92.71 -0.79 10.62 15 26 H 0.12 1.96 8.14 -2.39 -0.02 1.94 15 27 H 0.14 1.61 8.14 -2.39 -0.02 1.59 15 Total: -1.00 -67.44 248.12 3.45 -63.99 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: 0.49 Total: 9.89 kcal Atomic # 6 Polarization: -19.28 SS G_CDS: 2.45 Total: -16.83 kcal Atomic # 7 Polarization: -79.51 SS G_CDS: -2.28 Total: -81.79 kcal Atomic # 8 Polarization: -23.15 SS G_CDS: -0.05 Total: -23.20 kcal Atomic # 9 Polarization: -4.22 SS G_CDS: 0.79 Total: -3.43 kcal Atomic # 14 Polarization: 49.31 SS G_CDS: 2.05 Total: 51.37 kcal Total: -67.44 3.45 -63.99 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354874493.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.579 kcal (2) G-P(sol) polarization free energy of solvation -67.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds