Wall clock time and date at job start Sun Mar 29 2020 21:35:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38853 * 120.34022 * 2 1 4 4 C 1.38336 * 118.50413 * 180.02562 * 3 2 1 5 5 C 1.39166 * 119.09242 * 359.97438 * 4 3 2 6 6 N 1.39083 * 119.70467 * 179.97438 * 5 4 3 7 7 C 1.34776 * 120.00368 * 174.88959 * 6 5 4 8 8 O 1.21727 * 119.99512 * 5.12172 * 7 6 5 9 9 C 1.46202 * 120.00486 * 185.11349 * 7 6 5 10 10 H 1.08001 * 119.99316 * 5.06888 * 9 7 6 11 11 C 1.40112 * 120.00040 * 185.06278 * 9 7 6 12 12 N 1.30639 * 120.00114 * 354.93818 * 11 9 7 13 13 Si 1.86804 * 119.99972 * 174.93781 * 11 9 7 14 14 H 1.48497 * 109.46984 * 94.99802 * 13 11 9 15 15 H 1.48501 * 109.47287 * 214.99830 * 13 11 9 16 16 H 1.48503 * 109.46792 * 335.00103 * 13 11 9 17 17 N 1.32426 * 120.59081 * 0.02562 * 5 4 3 18 18 C 1.31893 * 121.62832 * 359.97438 * 17 5 4 19 19 H 1.08998 * 109.46660 * 90.00164 * 1 2 3 20 20 H 1.08997 * 109.46806 * 209.99416 * 1 2 3 21 21 H 1.08994 * 109.46810 * 330.00046 * 1 2 3 22 22 H 1.08005 * 120.74768 * 0.02562 * 3 2 1 23 23 H 1.08002 * 120.45344 * 179.72832 * 4 3 2 24 24 H 0.97006 * 120.00147 * 354.89598 * 6 5 4 25 25 H 0.96996 * 120.00016 * 180.02562 * 12 11 9 26 26 H 1.08004 * 119.56892 * 180.02562 * 18 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2084 1.1984 0.0000 4 6 3.5910 1.1540 -0.0005 5 6 4.2284 -0.0831 -0.0005 6 7 5.6179 -0.1425 -0.0016 7 6 6.2417 -1.3327 0.1024 8 8 5.5921 -2.3622 0.1033 9 6 7.6984 -1.3874 0.2138 10 1 8.2684 -0.4737 0.2954 11 6 8.3550 -2.6252 0.2151 12 7 7.6616 -3.7324 0.2164 13 14 10.2218 -2.6923 0.2148 14 1 10.7123 -2.8305 1.6095 15 1 10.6752 -3.8571 -0.5871 16 1 10.7619 -1.4426 -0.3784 17 7 3.5236 -1.2043 -0.0005 18 6 2.2048 -1.1922 0.0000 19 1 -0.3632 0.0000 -1.0277 20 1 -0.3633 -0.8900 0.5137 21 1 -0.3633 0.8900 0.5138 22 1 1.6862 2.1438 0.0004 23 1 4.1680 2.0670 -0.0050 24 1 6.1382 0.6727 -0.0771 25 1 8.1161 -4.5893 0.2176 26 1 1.6632 -2.1266 0.0004 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000005337690.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:15 Heat of formation + Delta-G solvation = -24.028928 kcal Electronic energy + Delta-G solvation = -12654.917904 eV Core-core repulsion = 10311.664347 eV Total energy + Delta-G solvation = -2343.253557 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 206.080 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.29268 -39.09826 -35.65343 -34.53482 -33.67382 -32.09081 -28.88109 -27.00084 -24.76702 -23.12207 -21.69287 -19.58632 -18.23241 -17.64655 -16.72452 -15.97140 -15.74681 -15.63911 -15.13988 -14.52178 -14.37679 -13.78416 -13.43866 -13.16528 -13.13658 -12.78465 -12.70293 -12.45995 -12.02218 -11.19270 -10.87304 -10.61739 -10.41445 -9.43953 -8.77180 -8.32327 -6.92406 0.34727 0.60425 1.39282 1.41654 1.57670 2.20654 2.42436 2.72722 3.04881 3.66667 3.79083 4.03789 4.21312 4.27669 4.42648 4.75034 4.95059 4.99907 5.13238 5.24594 5.26782 5.47851 5.72899 5.79879 6.09645 6.30306 6.78928 7.03862 7.64236 8.44945 8.61553 Molecular weight = 206.08amu Principal moments of inertia in cm(-1) A = 0.087085 B = 0.007379 C = 0.006830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 321.447596 B = 3793.655147 C = 4098.871857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.191 4.191 3 C -0.045 4.045 4 C -0.221 4.221 5 C 0.339 3.661 6 N -0.674 5.674 7 C 0.516 3.484 8 O -0.567 6.567 9 C -0.569 4.569 10 H 0.095 0.905 11 C 0.026 3.974 12 N -0.818 5.818 13 Si 1.005 2.995 14 H -0.262 1.262 15 H -0.273 1.273 16 H -0.245 1.245 17 N -0.535 5.535 18 C 0.102 3.898 19 H 0.077 0.923 20 H 0.068 0.932 21 H 0.085 0.915 22 H 0.176 0.824 23 H 0.160 0.840 24 H 0.415 0.585 25 H 0.277 0.723 26 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.625 11.138 -0.516 13.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.195 4.195 3 C -0.070 4.070 4 C -0.245 4.245 5 C 0.107 3.893 6 N -0.320 5.320 7 C 0.320 3.680 8 O -0.447 6.447 9 C -0.605 4.605 10 H 0.113 0.887 11 C -0.189 4.189 12 N -0.447 5.447 13 Si 0.823 3.177 14 H -0.186 1.186 15 H -0.198 1.198 16 H -0.168 1.168 17 N -0.250 5.250 18 C -0.057 4.057 19 H 0.096 0.904 20 H 0.087 0.913 21 H 0.104 0.896 22 H 0.193 0.807 23 H 0.178 0.822 24 H 0.251 0.749 25 H 0.087 0.913 26 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -7.515 9.368 -0.498 12.020 hybrid contribution 0.664 0.549 -0.027 0.862 sum -6.851 9.916 -0.525 12.064 Atomic orbital electron populations 1.20615 0.87575 1.03733 1.03002 1.21133 0.99240 0.93282 1.05845 1.21633 0.92337 0.99262 0.93785 1.21793 0.96648 0.96239 1.09796 1.19247 0.86030 0.90394 0.93606 1.44015 1.02833 1.11519 1.73633 1.18978 0.89607 0.81720 0.77709 1.90684 1.67544 1.33750 1.52762 1.21429 0.89851 0.95100 1.54097 0.88737 1.27066 1.06641 0.94078 0.91157 1.70183 1.39787 0.99213 1.35504 0.84906 0.74107 0.79395 0.79255 1.18640 1.19766 1.16809 1.67742 1.09379 1.31187 1.16706 1.22900 0.88494 0.99090 0.95178 0.90448 0.91330 0.89642 0.80696 0.82245 0.74866 0.91340 0.83091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.72 10.03 71.24 0.71 -1.00 15 2 C -0.19 -5.50 5.90 -19.74 -0.12 -5.62 15 3 C -0.04 -1.17 9.85 22.44 0.22 -0.95 15 4 C -0.22 -7.13 9.94 22.52 0.22 -6.90 15 5 C 0.34 15.41 7.42 133.04 0.99 16.39 15 6 N -0.67 -32.65 5.37 -312.52 -1.68 -34.33 15 7 C 0.52 31.32 7.69 86.31 0.66 31.99 15 8 O -0.57 -39.77 13.29 -4.43 -0.06 -39.83 15 9 C -0.57 -32.62 9.53 24.80 0.24 -32.38 15 10 H 0.09 4.75 7.85 -2.91 -0.02 4.72 15 11 C 0.03 1.47 5.50 85.33 0.47 1.94 15 12 N -0.82 -50.96 11.84 21.85 0.26 -50.70 15 13 Si 1.00 40.97 29.56 68.60 2.03 43.00 15 14 H -0.26 -10.16 7.11 99.48 0.71 -9.46 15 15 H -0.27 -10.79 7.11 99.48 0.71 -10.08 15 16 H -0.25 -9.16 7.11 99.48 0.71 -8.45 15 17 N -0.53 -27.12 7.88 -193.12 -1.52 -28.64 15 18 C 0.10 3.98 10.85 84.66 0.92 4.90 15 19 H 0.08 1.27 8.14 -2.39 -0.02 1.25 15 20 H 0.07 1.22 8.09 -2.39 -0.02 1.21 15 21 H 0.08 1.20 8.09 -2.39 -0.02 1.18 15 22 H 0.18 2.87 8.06 -2.91 -0.02 2.84 15 23 H 0.16 3.93 8.06 -2.91 -0.02 3.90 15 24 H 0.41 16.21 8.68 -92.70 -0.80 15.41 15 25 H 0.28 15.55 8.29 -92.71 -0.77 14.78 15 26 H 0.15 5.33 8.06 -2.91 -0.02 5.31 15 Total: -1.00 -83.27 239.31 3.74 -79.53 By element: Atomic # 1 Polarization: 22.22 SS G_CDS: 0.40 Total: 22.61 kcal Atomic # 6 Polarization: 4.04 SS G_CDS: 4.32 Total: 8.36 kcal Atomic # 7 Polarization: -110.73 SS G_CDS: -2.94 Total: -113.67 kcal Atomic # 8 Polarization: -39.77 SS G_CDS: -0.06 Total: -39.83 kcal Atomic # 14 Polarization: 40.97 SS G_CDS: 2.03 Total: 43.00 kcal Total: -83.27 3.74 -79.53 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005337690.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.498 kcal (2) G-P(sol) polarization free energy of solvation -83.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds